Wall clock time and date at job start Tue Mar 31 2020 16:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50706 * 120.00034 * 2 1 4 4 C 1.30997 * 120.00243 * 179.97438 * 2 1 3 5 5 C 1.50703 * 120.00054 * 352.97094 * 4 2 1 6 6 N 1.46494 * 109.47223 * 233.05888 * 5 4 2 7 7 C 1.34776 * 120.00269 * 180.02562 * 6 5 4 8 8 O 1.21355 * 119.99643 * 359.97438 * 7 6 5 9 9 C 1.49452 * 120.00387 * 180.02562 * 7 6 5 10 10 O 1.21351 * 119.99575 * 359.97438 * 9 7 6 11 11 N 1.34773 * 119.99979 * 179.97438 * 9 7 6 12 12 C 1.46504 * 119.99748 * 179.97438 * 11 9 7 13 13 C 1.50703 * 109.46736 * 179.97438 * 12 11 9 14 14 C 1.38324 * 119.96540 * 269.97296 * 13 12 11 15 15 C 1.38270 * 120.14055 * 180.02562 * 14 13 12 16 16 C 1.38132 * 120.06947 * 359.68262 * 15 14 13 17 17 C 1.38862 * 119.92503 * 0.59213 * 16 15 14 18 18 O 1.35748 * 120.06460 * 179.69813 * 17 16 15 19 19 C 1.34830 * 117.00202 * 354.59865 * 18 17 16 20 20 H 1.07995 * 119.99936 * 354.90039 * 19 18 17 21 21 C 1.38659 * 119.99586 * 174.90342 * 19 18 17 22 22 N 1.31551 * 120.00484 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99459 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47081 * 90.00278 * 23 21 19 25 25 H 1.48509 * 109.47223 * 210.00164 * 23 21 19 26 26 H 1.48496 * 109.47355 * 330.00133 * 23 21 19 27 27 C 1.38080 * 119.96792 * 90.00014 * 13 12 11 28 28 H 1.08999 * 109.46882 * 265.78992 * 1 2 3 29 29 H 1.09003 * 109.47222 * 25.79059 * 1 2 3 30 30 H 1.08996 * 109.46971 * 145.78753 * 1 2 3 31 31 H 1.08994 * 109.47088 * 270.00256 * 3 2 1 32 32 H 1.09006 * 109.46956 * 29.99807 * 3 2 1 33 33 H 1.08999 * 109.47397 * 149.99748 * 3 2 1 34 34 H 1.08005 * 120.00165 * 172.96793 * 4 2 1 35 35 H 1.08998 * 109.47022 * 113.05295 * 5 4 2 36 36 H 1.09001 * 109.46798 * 353.05510 * 5 4 2 37 37 H 0.97007 * 120.00144 * 359.97438 * 6 5 4 38 38 H 0.97000 * 120.00389 * 359.97438 * 11 9 7 39 39 H 1.08995 * 109.47136 * 59.99912 * 12 11 9 40 40 H 1.09001 * 109.47041 * 299.99433 * 12 11 9 41 41 H 1.08006 * 119.92721 * 0.02662 * 14 13 12 42 42 H 1.07996 * 119.96829 * 179.97438 * 15 14 13 43 43 H 1.07999 * 120.03929 * 180.31922 * 16 15 14 44 44 H 0.97000 * 120.00485 * 180.02562 * 22 21 19 45 45 H 1.07995 * 120.03035 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1344 0.0005 5 6 1.4171 -2.4346 0.1608 6 7 2.0088 -3.2045 1.2577 7 6 1.5028 -4.4101 1.5847 8 8 0.5565 -4.8576 0.9706 9 6 2.1061 -5.1952 2.7041 10 8 3.0520 -4.7474 3.3183 11 7 1.5996 -6.4006 3.0313 12 6 2.1914 -7.1704 4.1283 13 6 1.4460 -8.4703 4.2889 14 6 0.3550 -8.5409 5.1362 15 6 -0.3313 -9.7319 5.2867 16 6 0.0671 -10.8535 4.5859 17 6 1.1655 -10.7873 3.7389 18 8 1.5632 -11.8895 3.0535 19 6 0.9201 -13.0434 3.3235 20 1 0.1853 -13.0798 4.1141 21 6 1.2022 -14.1832 2.5860 22 7 2.0977 -14.1390 1.6233 23 14 0.3117 -15.7820 2.9606 24 1 -0.9265 -15.8618 2.1448 25 1 1.1955 -16.9295 2.6324 26 1 -0.0416 -15.8258 4.4022 27 6 1.8532 -9.5898 3.5906 28 1 -0.3633 -0.0754 1.0249 29 1 -0.3634 0.9253 -0.4471 30 1 -0.3633 -0.8498 -0.5778 31 1 2.4421 1.6198 -1.0276 32 1 1.6714 2.0648 0.5138 33 1 3.2129 1.1749 0.5139 34 1 3.2360 -1.1380 -0.1140 35 1 1.4845 -3.0083 -0.7635 36 1 0.3705 -2.2284 0.3850 37 1 2.7655 -2.8469 1.7483 38 1 0.8433 -6.7583 2.5405 39 1 2.1240 -6.5967 5.0525 40 1 3.2380 -7.3767 3.9041 41 1 0.0384 -7.6639 5.6813 42 1 -1.1825 -9.7840 5.9493 43 1 -0.4724 -11.7822 4.6999 44 1 2.2948 -14.9362 1.1072 45 1 2.7052 -9.5340 2.9292 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322769411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:33 Heat of formation + Delta-G solvation = -85.185670 kcal Electronic energy + Delta-G solvation = -26393.245162 eV Core-core repulsion = 22375.834889 eV Total energy + Delta-G solvation = -4017.410272 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.77738 -40.83789 -39.76367 -38.47612 -38.03136 -36.17510 -35.15146 -34.29115 -32.31878 -30.82093 -30.28164 -28.66686 -27.96641 -27.21496 -25.75193 -23.86423 -23.26422 -22.43173 -21.55646 -20.31789 -19.44397 -18.82940 -18.44606 -18.03016 -17.25005 -16.81079 -16.80019 -16.50528 -16.42877 -16.07900 -15.89955 -15.51126 -15.33106 -15.05133 -14.89114 -14.80379 -14.45085 -14.32560 -13.95727 -13.73814 -13.54386 -13.33795 -13.24598 -13.07796 -12.88416 -12.83893 -12.57050 -12.45952 -12.36855 -12.28099 -12.11063 -11.87455 -11.25441 -10.90780 -10.80215 -10.44474 -10.33329 -9.78903 -9.69369 -9.04455 -8.47502 -6.16017 0.28599 0.31603 0.69562 0.90254 1.35587 1.44085 1.52923 1.57033 2.08718 2.17293 2.64365 2.88306 3.17355 3.35397 3.43405 3.71883 3.78324 4.00466 4.07997 4.24863 4.29423 4.38859 4.41152 4.50912 4.53877 4.59892 4.68577 4.71984 4.79440 4.91091 4.94168 4.99501 5.05065 5.05734 5.11188 5.13838 5.20076 5.24485 5.60131 5.66532 5.68413 5.70442 5.86956 5.88986 6.00822 6.15686 6.29156 6.65530 6.87805 6.97208 7.77309 8.75595 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021610 B = 0.001784 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.384726 B =15695.125983 C =16179.724349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 C -0.122 4.122 4 C -0.204 4.204 5 C 0.144 3.856 6 N -0.683 5.683 7 C 0.508 3.492 8 O -0.545 6.545 9 C 0.509 3.491 10 O -0.540 6.540 11 N -0.686 5.686 12 C 0.171 3.829 13 C -0.065 4.065 14 C -0.167 4.167 15 C -0.071 4.071 16 C -0.233 4.233 17 C 0.110 3.890 18 O -0.232 6.232 19 C -0.413 4.413 20 H 0.103 0.897 21 C -0.023 4.023 22 N -0.920 5.920 23 Si 1.019 2.981 24 H -0.264 1.264 25 H -0.273 1.273 26 H -0.252 1.252 27 C -0.180 4.180 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.127 0.873 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.420 0.580 38 H 0.416 0.584 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.121 0.879 44 H 0.272 0.728 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.209 27.957 1.183 28.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.098 4.098 3 C -0.179 4.179 4 C -0.222 4.222 5 C 0.022 3.978 6 N -0.336 5.336 7 C 0.288 3.712 8 O -0.422 6.422 9 C 0.290 3.710 10 O -0.418 6.418 11 N -0.338 5.338 12 C 0.049 3.951 13 C -0.065 4.065 14 C -0.186 4.186 15 C -0.089 4.089 16 C -0.252 4.252 17 C 0.060 3.940 18 O -0.139 6.139 19 C -0.489 4.489 20 H 0.120 0.880 21 C -0.221 4.221 22 N -0.558 5.558 23 Si 0.838 3.162 24 H -0.189 1.189 25 H -0.197 1.197 26 H -0.175 1.175 27 C -0.200 4.200 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.145 0.855 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.258 0.742 38 H 0.253 0.747 39 H 0.121 0.879 40 H 0.096 0.904 41 H 0.169 0.831 42 H 0.167 0.833 43 H 0.139 0.861 44 H 0.081 0.919 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.930 27.806 0.867 27.973 hybrid contribution -0.057 -1.287 -0.315 1.326 sum -2.987 26.519 0.551 26.692 Atomic orbital electron populations 1.21045 0.91881 1.03376 1.02721 1.21993 0.96440 0.95531 0.95790 1.20936 0.99954 0.93958 1.03010 1.22543 1.00552 0.92110 1.07032 1.20552 0.97533 0.90618 0.89073 1.45750 1.35386 1.17085 1.35349 1.20090 0.83793 0.82916 0.84368 1.90787 1.28147 1.69865 1.53437 1.20127 0.83798 0.82566 0.84527 1.90748 1.27728 1.69859 1.53498 1.45926 1.35205 1.17541 1.35154 1.20295 0.96381 0.88016 0.90381 1.19439 0.96866 0.92972 0.97262 1.21035 0.96802 0.98748 1.01985 1.21178 0.99144 0.91444 0.97105 1.21403 0.99773 1.01127 1.02932 1.19880 0.93702 0.88174 0.92274 1.83954 1.56666 1.15377 1.57887 1.21818 1.22969 0.84946 1.19167 0.87952 1.26590 0.97672 1.02861 0.94942 1.70182 1.32935 1.31184 1.21536 0.84585 0.77518 0.74509 0.79604 1.18870 1.19742 1.17512 1.20249 1.02891 0.91366 1.05475 0.90939 0.90249 0.91561 0.90476 0.90607 0.91199 0.85529 0.90985 0.90070 0.74210 0.74708 0.87889 0.90371 0.83120 0.83265 0.86148 0.91873 0.87230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 8.90 71.24 0.63 -0.60 16 2 C -0.10 -0.97 6.05 -16.48 -0.10 -1.07 16 3 C -0.12 -0.83 10.01 71.24 0.71 -0.12 16 4 C -0.20 -2.38 9.21 25.65 0.24 -2.14 16 5 C 0.14 2.27 5.68 85.64 0.49 2.75 16 6 N -0.68 -12.62 5.54 -468.14 -2.59 -15.21 16 7 C 0.51 12.45 7.89 87.27 0.69 13.14 16 8 O -0.54 -16.16 16.48 -3.26 -0.05 -16.21 16 9 C 0.51 13.16 7.89 87.27 0.69 13.85 16 10 O -0.54 -15.27 16.48 -3.25 -0.05 -15.32 16 11 N -0.69 -17.74 5.54 -468.13 -2.59 -20.33 16 12 C 0.17 4.44 5.80 85.63 0.50 4.93 16 13 C -0.06 -2.04 5.25 -19.88 -0.10 -2.14 16 14 C -0.17 -4.72 9.70 22.30 0.22 -4.51 16 15 C -0.07 -2.24 10.04 22.25 0.22 -2.02 16 16 C -0.23 -9.69 9.14 22.39 0.20 -9.49 16 17 C 0.11 5.33 6.65 22.58 0.15 5.48 16 18 O -0.23 -13.84 9.76 -22.71 -0.22 -14.06 16 19 C -0.41 -23.80 9.45 67.92 0.64 -23.16 16 20 H 0.10 5.37 5.28 -2.91 -0.02 5.36 16 21 C -0.02 -1.31 5.49 84.84 0.47 -0.84 16 22 N -0.92 -56.50 13.67 21.61 0.30 -56.20 16 23 Si 1.02 42.58 29.55 68.60 2.03 44.61 16 24 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 27 C -0.18 -7.40 9.65 22.39 0.22 -7.18 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.08 0.53 8.10 -2.39 -0.02 0.52 16 30 H 0.07 0.67 6.72 -2.39 -0.02 0.66 16 31 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.08 0.41 8.12 -2.38 -0.02 0.39 16 33 H 0.07 0.45 8.06 -2.39 -0.02 0.43 16 34 H 0.13 1.26 8.05 -2.91 -0.02 1.24 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.30 5.83 -2.39 -0.01 1.29 16 37 H 0.42 6.62 7.94 -92.70 -0.74 5.89 16 38 H 0.42 11.03 7.94 -92.71 -0.74 10.29 16 39 H 0.10 2.26 8.08 -2.39 -0.02 2.24 16 40 H 0.08 2.11 8.09 -2.39 -0.02 2.09 16 41 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 42 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 43 H 0.12 5.11 5.70 -2.91 -0.02 5.10 16 44 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 45 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -73.56 389.92 2.23 -71.33 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: -0.43 Total: 34.49 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 5.86 Total: -13.10 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -4.89 Total: -91.74 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -0.33 Total: -45.59 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -73.56 2.23 -71.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322769411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.855 kcal (2) G-P(sol) polarization free energy of solvation -73.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds