Wall clock time and date at job start Tue Mar 31 2020 17:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46673 * 2 1 4 4 H 1.09001 * 109.47002 * 55.00083 * 3 2 1 5 5 C 1.52999 * 109.47244 * 295.00372 * 3 2 1 6 6 C 1.52996 * 109.47004 * 175.00062 * 3 2 1 7 7 H 1.09003 * 110.53252 * 61.38046 * 6 3 2 8 8 N 1.47305 * 110.60396 * 298.54668 * 6 3 2 9 9 C 1.34526 * 106.62296 * 241.47738 * 8 6 3 10 10 O 1.21541 * 123.77169 * 180.02562 * 9 8 6 11 11 N 1.33797 * 112.45529 * 359.97438 * 9 8 6 12 12 C 1.46498 * 124.17544 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.47311 * 90.02730 * 12 11 9 14 14 C 1.38327 * 119.96746 * 270.02554 * 13 12 11 15 15 C 1.38276 * 120.14108 * 179.97438 * 14 13 12 16 16 C 1.38120 * 120.06697 * 359.74471 * 15 14 13 17 17 C 1.38860 * 119.93057 * 0.50072 * 16 15 14 18 18 O 1.35755 * 120.06904 * 179.77044 * 17 16 15 19 19 C 1.34834 * 117.00039 * 5.24274 * 18 17 16 20 20 H 1.08007 * 119.99708 * 354.92047 * 19 18 17 21 21 C 1.38654 * 120.00287 * 174.91893 * 19 18 17 22 22 N 1.31560 * 119.99804 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00053 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47071 * 269.99682 * 23 21 19 25 25 H 1.48501 * 109.47379 * 29.99852 * 23 21 19 26 26 H 1.48502 * 109.47163 * 150.00089 * 23 21 19 27 27 C 1.38075 * 119.96729 * 89.99281 * 13 12 11 28 28 C 1.34765 * 111.64464 * 0.23587 * 11 9 8 29 29 O 1.21229 * 127.15910 * 179.73510 * 28 11 9 30 30 H 1.09002 * 109.46561 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47361 * 299.99399 * 1 2 3 32 32 H 1.08997 * 109.47905 * 60.00146 * 1 2 3 33 33 H 1.08997 * 109.47361 * 240.00600 * 2 1 3 34 34 H 1.08995 * 109.47396 * 119.99743 * 2 1 3 35 35 H 1.08995 * 109.47572 * 59.99650 * 5 3 2 36 36 H 1.09002 * 109.47537 * 180.02562 * 5 3 2 37 37 H 1.09001 * 109.46885 * 299.99783 * 5 3 2 38 38 H 0.96999 * 126.69048 * 61.43408 * 8 6 3 39 39 H 1.08998 * 109.47535 * 330.02674 * 12 11 9 40 40 H 1.08998 * 109.46965 * 210.02815 * 12 11 9 41 41 H 1.08004 * 119.92718 * 359.94442 * 14 13 12 42 42 H 1.08001 * 119.96742 * 179.97438 * 15 14 13 43 43 H 1.08007 * 120.03249 * 180.28057 * 16 15 14 44 44 H 0.97004 * 120.00002 * 0.02562 * 22 21 19 45 45 H 1.07999 * 120.03388 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 1.6350 2.1266 -1.3073 6 6 3.5647 1.4445 0.1257 7 1 4.0188 0.9302 -0.7213 8 7 3.9810 0.8217 1.3940 9 6 4.6364 1.7678 2.0904 10 8 5.1170 1.5850 3.1917 11 7 4.7010 2.9324 1.4348 12 6 5.3550 4.1351 1.9561 13 6 6.8019 4.1428 1.5351 14 6 7.7591 3.5529 2.3409 15 6 9.0877 3.5574 1.9579 16 6 9.4624 4.1466 0.7662 17 6 8.5046 4.7440 -0.0426 18 8 8.8704 5.3280 -1.2122 19 6 10.1601 5.1993 -1.5837 20 1 10.8677 4.7223 -0.9216 21 6 10.5781 5.6792 -2.8155 22 7 9.7160 6.2598 -3.6222 23 14 12.3648 5.5002 -3.3303 24 1 13.1300 6.6924 -2.8849 25 1 12.9399 4.2814 -2.7068 26 1 12.4447 5.3848 -4.8087 27 6 7.1708 4.7379 0.3451 28 6 4.0852 2.8638 0.2380 29 8 3.9721 3.7520 -0.5793 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3635 0.5138 -0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.5487 2.1253 -1.3969 36 1 1.9986 3.1542 -1.3075 37 1 2.0697 1.5877 -2.1491 38 1 3.8145 -0.0923 1.6730 39 1 5.2932 4.1396 3.0443 40 1 4.8567 5.0201 1.5603 41 1 7.4681 3.0884 3.2715 42 1 9.8328 3.0964 2.5894 43 1 10.4997 4.1458 0.4653 44 1 8.7881 6.3524 -3.3549 45 1 6.4231 5.1981 -0.2838 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324608999.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:18 Heat of formation + Delta-G solvation = -61.019028 kcal Electronic energy + Delta-G solvation = -28639.789732 eV Core-core repulsion = 24623.427404 eV Total energy + Delta-G solvation = -4016.362328 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.54932 -39.16733 -38.67413 -37.54216 -36.71851 -35.72901 -34.24663 -32.28267 -31.00800 -30.47953 -29.12081 -27.21369 -26.53590 -24.87374 -24.37823 -22.89663 -21.66713 -21.40059 -20.64157 -20.21601 -18.27962 -18.00372 -17.27726 -16.92394 -16.43944 -15.61162 -15.56717 -15.40636 -15.09686 -14.95875 -14.63322 -14.34384 -14.11471 -13.85577 -13.73424 -13.61833 -13.42230 -13.21124 -12.89130 -12.62012 -12.28744 -12.09142 -11.92110 -11.75584 -11.44917 -11.32219 -11.21854 -11.07976 -10.94375 -10.86017 -10.73161 -10.32036 -10.30693 -10.06499 -9.80801 -9.61335 -9.37069 -8.78347 -8.26471 -7.33925 -6.76950 -4.06470 1.59091 1.71737 2.25411 2.45616 2.98335 3.01293 3.23288 3.29688 3.42986 3.81157 4.10532 4.16575 4.36399 4.50153 4.58619 4.72646 4.86549 4.97966 4.99542 5.12434 5.15087 5.19639 5.26226 5.32623 5.41702 5.51541 5.58011 5.59011 5.63912 5.67943 5.73534 5.76228 5.90098 5.91806 6.09097 6.09856 6.25617 6.52298 6.60867 6.78330 6.99045 7.08009 7.20712 7.28446 7.36287 7.54600 7.66931 8.06243 8.40043 8.92095 9.60759 10.67152 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.003008 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.804455 B = 9306.111200 C =10456.552154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.087 4.087 4 H 0.080 0.920 5 C -0.159 4.159 6 C 0.095 3.905 7 H 0.127 0.873 8 N -0.727 5.727 9 C 0.704 3.296 10 O -0.541 6.541 11 N -0.569 5.569 12 C 0.167 3.833 13 C -0.084 4.084 14 C -0.183 4.183 15 C -0.079 4.079 16 C -0.220 4.220 17 C 0.151 3.849 18 O -0.201 6.201 19 C -0.473 4.473 20 H 0.083 0.917 21 C 0.010 3.990 22 N -0.881 5.881 23 Si 1.099 2.901 24 H -0.281 1.281 25 H -0.283 1.283 26 H -0.275 1.275 27 C -0.168 4.168 28 C 0.524 3.476 29 O -0.453 6.453 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.437 0.563 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.129 0.871 44 H 0.283 0.717 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.366 -12.154 8.308 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.107 4.107 4 H 0.098 0.902 5 C -0.216 4.216 6 C -0.014 4.014 7 H 0.144 0.856 8 N -0.391 5.391 9 C 0.405 3.595 10 O -0.415 6.415 11 N -0.314 5.314 12 C 0.047 3.953 13 C -0.085 4.085 14 C -0.202 4.202 15 C -0.098 4.098 16 C -0.239 4.239 17 C 0.098 3.902 18 O -0.106 6.106 19 C -0.549 4.549 20 H 0.101 0.899 21 C -0.196 4.196 22 N -0.513 5.513 23 Si 0.923 3.077 24 H -0.207 1.207 25 H -0.209 1.209 26 H -0.200 1.200 27 C -0.188 4.188 28 C 0.311 3.689 29 O -0.322 6.322 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.281 0.719 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.146 0.854 44 H 0.093 0.907 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.170 -11.163 7.027 20.103 hybrid contribution -0.907 -0.882 1.470 1.939 sum -16.077 -12.045 8.496 21.811 Atomic orbital electron populations 1.21799 0.95157 1.01843 1.02229 1.21562 0.96639 0.95023 1.02341 1.21354 0.90674 0.98097 1.00556 0.90169 1.21990 1.01837 1.02254 0.95537 1.22215 0.97711 0.91962 0.89485 0.85596 1.45545 1.60168 1.14320 1.19079 1.15877 0.78979 0.80613 0.84026 1.90992 1.51036 1.81177 1.18272 1.46486 1.52125 1.13411 1.19392 1.20529 0.90038 0.84533 1.00215 1.19374 0.93607 1.00307 0.95191 1.20587 0.92886 1.05674 1.01083 1.20769 0.95537 0.97877 0.95581 1.21268 1.00410 1.05606 0.96622 1.19148 0.92571 0.91357 0.87122 1.83677 1.30214 1.64245 1.32453 1.22231 0.82523 1.44622 1.05483 0.89905 1.26535 1.07774 0.94534 0.90709 1.70536 1.05978 1.37285 1.37469 0.83056 0.71030 0.76719 0.76913 1.20677 1.20859 1.20030 1.20105 0.93895 1.06914 0.97890 1.20758 0.77114 0.90001 0.81056 1.90811 1.54887 1.43802 1.42677 0.92551 0.92686 0.92116 0.91228 0.91867 0.91655 0.90583 0.91962 0.71877 0.88032 0.88220 0.86882 0.87169 0.85365 0.90702 0.86317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.67 37.16 0.36 -0.42 16 2 C -0.12 -0.64 5.34 -26.73 -0.14 -0.78 16 3 C -0.09 -0.63 2.16 -90.62 -0.20 -0.83 16 4 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 5 C -0.16 -1.25 8.71 37.16 0.32 -0.93 16 6 C 0.10 0.89 3.22 -68.21 -0.22 0.67 16 7 H 0.13 1.05 8.14 -51.93 -0.42 0.62 16 8 N -0.73 -6.82 5.86 -59.19 -0.35 -7.17 16 9 C 0.70 9.52 8.62 -88.02 -0.76 8.76 16 10 O -0.54 -8.86 17.48 5.33 0.09 -8.76 16 11 N -0.57 -7.96 2.59 -122.02 -0.32 -8.28 16 12 C 0.17 2.45 5.82 -5.20 -0.03 2.42 16 13 C -0.08 -1.54 5.46 -104.65 -0.57 -2.11 16 14 C -0.18 -3.36 9.70 -39.53 -0.38 -3.74 16 15 C -0.08 -1.53 10.04 -39.61 -0.40 -1.92 16 16 C -0.22 -4.94 9.17 -39.39 -0.36 -5.30 16 17 C 0.15 3.73 6.65 -39.11 -0.26 3.47 16 18 O -0.20 -5.78 9.16 0.02 0.00 -5.78 16 19 C -0.47 -13.48 9.49 30.89 0.29 -13.19 16 20 H 0.08 2.23 5.20 -52.48 -0.27 1.95 16 21 C 0.01 0.28 5.49 -17.51 -0.10 0.18 16 22 N -0.88 -26.62 13.70 55.48 0.76 -25.86 16 23 Si 1.10 23.99 29.92 -169.99 -5.09 18.91 16 24 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 27 C -0.17 -3.64 9.65 -39.40 -0.38 -4.02 16 28 C 0.52 7.04 7.43 -10.55 -0.08 6.96 16 29 O -0.45 -7.28 15.79 5.60 0.09 -7.19 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.31 6.57 -51.93 -0.34 -0.03 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.30 7.00 -51.93 -0.36 -0.06 16 35 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 36 H 0.08 0.78 6.08 -51.93 -0.32 0.47 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.44 2.94 8.13 -40.82 -0.33 2.61 16 39 H 0.10 1.34 7.80 -51.93 -0.41 0.94 16 40 H 0.10 1.36 7.94 -51.93 -0.41 0.95 16 41 H 0.11 1.92 8.06 -52.48 -0.42 1.50 16 42 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.13 2.90 5.64 -52.48 -0.30 2.61 16 44 H 0.28 8.78 7.97 -40.82 -0.33 8.45 16 45 H 0.12 2.58 8.06 -52.49 -0.42 2.15 16 LS Contribution 374.34 15.07 5.64 5.64 Total: -1.00 -34.02 374.34 -8.07 -42.09 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.01 Total: 7.17 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -2.90 Total: -10.77 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.10 Total: -41.30 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: 0.18 Total: -21.74 kcal Atomic # 14 Polarization: 23.99 SS G_CDS: -5.09 Total: 18.91 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.02 -8.07 -42.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324608999.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.925 kcal (2) G-P(sol) polarization free energy of solvation -34.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds