Wall clock time and date at job start Tue Mar 31 2020 17:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46673 * 2 1 4 4 H 1.09001 * 109.47002 * 55.00083 * 3 2 1 5 5 C 1.52999 * 109.47244 * 295.00372 * 3 2 1 6 6 C 1.52996 * 109.47004 * 175.00062 * 3 2 1 7 7 H 1.09003 * 110.53252 * 61.38046 * 6 3 2 8 8 N 1.47305 * 110.60396 * 298.54668 * 6 3 2 9 9 C 1.34526 * 106.62296 * 241.47738 * 8 6 3 10 10 O 1.21541 * 123.77169 * 180.02562 * 9 8 6 11 11 N 1.33797 * 112.45529 * 359.97438 * 9 8 6 12 12 C 1.46498 * 124.17544 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.47311 * 90.02730 * 12 11 9 14 14 C 1.38327 * 119.96746 * 270.02554 * 13 12 11 15 15 C 1.38276 * 120.14108 * 179.97438 * 14 13 12 16 16 C 1.38120 * 120.06697 * 359.74471 * 15 14 13 17 17 C 1.38860 * 119.93057 * 0.50072 * 16 15 14 18 18 O 1.35755 * 120.06904 * 179.77044 * 17 16 15 19 19 C 1.34834 * 117.00039 * 5.24274 * 18 17 16 20 20 H 1.08007 * 119.99708 * 354.92047 * 19 18 17 21 21 C 1.38654 * 120.00287 * 174.91893 * 19 18 17 22 22 N 1.31560 * 119.99804 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00053 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47071 * 269.99682 * 23 21 19 25 25 H 1.48501 * 109.47379 * 29.99852 * 23 21 19 26 26 H 1.48502 * 109.47163 * 150.00089 * 23 21 19 27 27 C 1.38075 * 119.96729 * 89.99281 * 13 12 11 28 28 C 1.34765 * 111.64464 * 0.23587 * 11 9 8 29 29 O 1.21229 * 127.15910 * 179.73510 * 28 11 9 30 30 H 1.09002 * 109.46561 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47361 * 299.99399 * 1 2 3 32 32 H 1.08997 * 109.47905 * 60.00146 * 1 2 3 33 33 H 1.08997 * 109.47361 * 240.00600 * 2 1 3 34 34 H 1.08995 * 109.47396 * 119.99743 * 2 1 3 35 35 H 1.08995 * 109.47572 * 59.99650 * 5 3 2 36 36 H 1.09002 * 109.47537 * 180.02562 * 5 3 2 37 37 H 1.09001 * 109.46885 * 299.99783 * 5 3 2 38 38 H 0.96999 * 126.69048 * 61.43408 * 8 6 3 39 39 H 1.08998 * 109.47535 * 330.02674 * 12 11 9 40 40 H 1.08998 * 109.46965 * 210.02815 * 12 11 9 41 41 H 1.08004 * 119.92718 * 359.94442 * 14 13 12 42 42 H 1.08001 * 119.96742 * 179.97438 * 15 14 13 43 43 H 1.08007 * 120.03249 * 180.28057 * 16 15 14 44 44 H 0.97004 * 120.00002 * 0.02562 * 22 21 19 45 45 H 1.07999 * 120.03388 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 1.6350 2.1266 -1.3073 6 6 3.5647 1.4445 0.1257 7 1 4.0188 0.9302 -0.7213 8 7 3.9810 0.8217 1.3940 9 6 4.6364 1.7678 2.0904 10 8 5.1170 1.5850 3.1917 11 7 4.7010 2.9324 1.4348 12 6 5.3550 4.1351 1.9561 13 6 6.8019 4.1428 1.5351 14 6 7.7591 3.5529 2.3409 15 6 9.0877 3.5574 1.9579 16 6 9.4624 4.1466 0.7662 17 6 8.5046 4.7440 -0.0426 18 8 8.8704 5.3280 -1.2122 19 6 10.1601 5.1993 -1.5837 20 1 10.8677 4.7223 -0.9216 21 6 10.5781 5.6792 -2.8155 22 7 9.7160 6.2598 -3.6222 23 14 12.3648 5.5002 -3.3303 24 1 13.1300 6.6924 -2.8849 25 1 12.9399 4.2814 -2.7068 26 1 12.4447 5.3848 -4.8087 27 6 7.1708 4.7379 0.3451 28 6 4.0852 2.8638 0.2380 29 8 3.9721 3.7520 -0.5793 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3635 0.5138 -0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.5487 2.1253 -1.3969 36 1 1.9986 3.1542 -1.3075 37 1 2.0697 1.5877 -2.1491 38 1 3.8145 -0.0923 1.6730 39 1 5.2932 4.1396 3.0443 40 1 4.8567 5.0201 1.5603 41 1 7.4681 3.0884 3.2715 42 1 9.8328 3.0964 2.5894 43 1 10.4997 4.1458 0.4653 44 1 8.7881 6.3524 -3.3549 45 1 6.4231 5.1981 -0.2838 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324608999.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:17 Heat of formation + Delta-G solvation = -83.161194 kcal Electronic energy + Delta-G solvation = -28640.749889 eV Core-core repulsion = 24623.427404 eV Total energy + Delta-G solvation = -4017.322485 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.58460 -40.96317 -39.78779 -38.81916 -38.03994 -36.82272 -35.26108 -34.32946 -32.47300 -31.05538 -30.86391 -28.29292 -27.68769 -26.80573 -25.16090 -23.99984 -23.23949 -22.93681 -21.48814 -21.23569 -19.98455 -19.18755 -18.76128 -18.17342 -17.55100 -16.99283 -16.74873 -16.63985 -16.55383 -16.17783 -15.74865 -15.63255 -15.48681 -15.26377 -15.17175 -15.05208 -14.63813 -14.24933 -14.06007 -13.48107 -13.30580 -13.18919 -13.00330 -12.84801 -12.65482 -12.62496 -12.51250 -12.39157 -12.12448 -12.02303 -11.93776 -11.75214 -11.50466 -11.46947 -11.07434 -10.88958 -10.80049 -10.47418 -9.91024 -9.18641 -8.96891 -6.27948 0.18252 0.54202 0.56406 1.27466 1.47041 1.60730 1.76047 1.89767 2.10481 2.33120 2.75059 2.89147 3.06604 3.20152 3.47018 3.65595 3.75871 3.86436 3.99488 4.04782 4.19702 4.21095 4.28929 4.42301 4.45167 4.50131 4.57371 4.59912 4.61193 4.66426 4.80407 4.84763 5.03074 5.09702 5.10946 5.17249 5.20700 5.21826 5.42826 5.50870 5.52833 5.57884 5.62247 5.78543 5.94715 5.99063 6.22244 6.32424 6.83448 7.06663 7.58321 8.47443 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.003008 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.804455 B = 9306.111200 C =10456.552154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.078 4.078 4 H 0.077 0.923 5 C -0.158 4.158 6 C 0.105 3.895 7 H 0.144 0.856 8 N -0.702 5.702 9 C 0.701 3.299 10 O -0.569 6.569 11 N -0.574 5.574 12 C 0.166 3.834 13 C -0.072 4.072 14 C -0.162 4.162 15 C -0.072 4.072 16 C -0.229 4.229 17 C 0.114 3.886 18 O -0.251 6.251 19 C -0.488 4.488 20 H 0.092 0.908 21 C -0.044 4.044 22 N -0.916 5.916 23 Si 1.148 2.852 24 H -0.263 1.263 25 H -0.259 1.259 26 H -0.273 1.273 27 C -0.176 4.176 28 C 0.515 3.485 29 O -0.487 6.487 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.066 0.934 38 H 0.452 0.548 39 H 0.124 0.876 40 H 0.105 0.895 41 H 0.142 0.858 42 H 0.149 0.851 43 H 0.122 0.878 44 H 0.259 0.741 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.789 -14.951 10.493 24.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.098 4.098 4 H 0.096 0.904 5 C -0.215 4.215 6 C -0.004 4.004 7 H 0.162 0.838 8 N -0.367 5.367 9 C 0.402 3.598 10 O -0.445 6.445 11 N -0.319 5.319 12 C 0.046 3.954 13 C -0.073 4.073 14 C -0.181 4.181 15 C -0.090 4.090 16 C -0.249 4.249 17 C 0.064 3.936 18 O -0.159 6.159 19 C -0.564 4.564 20 H 0.110 0.890 21 C -0.240 4.240 22 N -0.551 5.551 23 Si 0.963 3.037 24 H -0.188 1.188 25 H -0.183 1.183 26 H -0.198 1.198 27 C -0.196 4.196 28 C 0.303 3.697 29 O -0.358 6.358 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.300 0.700 39 H 0.142 0.858 40 H 0.124 0.876 41 H 0.159 0.841 42 H 0.167 0.833 43 H 0.140 0.860 44 H 0.068 0.932 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.644 -14.025 9.265 22.962 hybrid contribution -0.998 -0.127 1.066 1.466 sum -16.642 -14.151 10.331 24.165 Atomic orbital electron populations 1.21804 0.94831 1.02361 1.02098 1.21561 0.96851 0.93317 1.03393 1.21330 0.88778 0.99631 1.00060 0.90429 1.21970 1.02759 1.00674 0.96121 1.22313 0.99138 0.89158 0.89763 0.83829 1.45429 1.58637 1.14357 1.18300 1.15965 0.79188 0.80823 0.83822 1.90974 1.52514 1.81599 1.19396 1.46515 1.52059 1.13530 1.19838 1.20540 0.87732 0.85564 1.01574 1.19740 0.95987 0.98128 0.93440 1.21008 0.92359 1.03421 1.01334 1.21171 0.96931 0.96505 0.94418 1.21379 0.99718 1.06059 0.97731 1.19714 0.94322 0.92719 0.86831 1.83662 1.30446 1.67008 1.34754 1.22627 0.83070 1.44672 1.06032 0.89019 1.28432 1.11556 0.93388 0.90671 1.70681 1.05136 1.40803 1.38459 0.82546 0.65985 0.78300 0.76834 1.18815 1.18268 1.19753 1.20210 0.92630 1.07610 0.99177 1.21469 0.76551 0.91366 0.80332 1.90807 1.56016 1.45367 1.43572 0.91724 0.92910 0.92228 0.90317 0.90689 0.90215 0.93353 0.91525 0.69960 0.85755 0.87648 0.84069 0.83324 0.86033 0.93213 0.87576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.67 71.98 0.70 -0.46 16 2 C -0.11 -0.86 5.34 30.60 0.16 -0.70 16 3 C -0.08 -0.97 2.16 -10.79 -0.02 -1.00 16 4 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 5 C -0.16 -2.31 8.71 71.98 0.63 -1.68 16 6 C 0.10 1.73 3.22 44.37 0.14 1.87 16 7 H 0.14 2.00 8.14 -2.39 -0.02 1.99 16 8 N -0.70 -11.08 5.86 -459.61 -2.69 -13.77 16 9 C 0.70 17.14 8.62 179.44 1.55 18.69 16 10 O -0.57 -16.91 17.48 -3.84 -0.07 -16.98 16 11 N -0.57 -15.17 2.59 -777.22 -2.01 -17.18 16 12 C 0.17 4.63 5.82 85.63 0.50 5.13 16 13 C -0.07 -2.55 5.46 -19.88 -0.11 -2.65 16 14 C -0.16 -5.45 9.70 22.30 0.22 -5.23 16 15 C -0.07 -2.59 10.04 22.25 0.22 -2.37 16 16 C -0.23 -10.31 9.17 22.39 0.21 -10.10 16 17 C 0.11 5.84 6.65 22.58 0.15 5.99 16 18 O -0.25 -15.33 9.16 -22.83 -0.21 -15.54 16 19 C -0.49 -29.09 9.49 67.92 0.64 -28.44 16 20 H 0.09 5.08 5.20 -2.91 -0.02 5.06 16 21 C -0.04 -2.59 5.49 84.83 0.47 -2.12 16 22 N -0.92 -58.42 13.70 21.61 0.30 -58.12 16 23 Si 1.15 48.77 29.92 68.60 2.05 50.82 16 24 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 25 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 C -0.18 -7.84 9.65 22.39 0.22 -7.63 16 28 C 0.51 13.44 7.43 87.94 0.65 14.09 16 29 O -0.49 -16.05 15.79 -2.87 -0.05 -16.09 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.46 6.57 -2.39 -0.02 0.45 16 33 H 0.08 0.50 8.14 -2.39 -0.02 0.49 16 34 H 0.07 0.42 7.00 -2.39 -0.02 0.40 16 35 H 0.08 0.93 6.56 -2.39 -0.02 0.91 16 36 H 0.05 1.00 6.08 -2.39 -0.01 0.99 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.45 4.41 8.13 -92.71 -0.75 3.66 16 39 H 0.12 2.93 7.80 -2.39 -0.02 2.91 16 40 H 0.11 2.82 7.94 -2.39 -0.02 2.80 16 41 H 0.14 4.12 8.06 -2.91 -0.02 4.09 16 42 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 43 H 0.12 5.55 5.64 -2.91 -0.02 5.54 16 44 H 0.26 17.35 7.97 -92.70 -0.74 16.62 16 45 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -79.14 374.34 3.95 -75.19 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.31 Total: 28.28 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 6.32 Total: -16.61 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -4.41 Total: -89.07 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -0.32 Total: -48.62 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 2.05 Total: 50.82 kcal Total: -79.14 3.95 -75.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324608999.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.967 kcal (2) G-P(sol) polarization free energy of solvation -79.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds