Wall clock time and date at job start Tue Mar 31 2020 16:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46979 * 2 1 4 4 C 1.53001 * 109.47128 * 119.99671 * 2 1 3 5 5 H 1.08997 * 112.78628 * 190.01259 * 4 2 1 6 6 C 1.53759 * 113.55219 * 320.87650 * 4 2 1 7 7 C 1.53491 * 83.26250 * 140.98201 * 6 4 2 8 8 N 1.47073 * 87.98570 * 333.76315 * 7 6 4 9 9 C 1.34777 * 136.05843 * 207.08922 * 8 7 6 10 10 O 1.21358 * 119.99717 * 185.03546 * 9 8 7 11 11 C 1.49319 * 119.99657 * 5.03186 * 9 8 7 12 12 O 1.21387 * 120.00408 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99657 * 179.97438 * 11 9 8 14 14 C 1.39743 * 119.99899 * 174.81233 * 13 11 9 15 15 C 1.38992 * 120.01024 * 325.25505 * 14 13 11 16 16 C 1.37966 * 119.99692 * 180.27607 * 15 14 13 17 17 C 1.38939 * 120.00254 * 359.97438 * 16 15 14 18 18 O 1.35753 * 119.98880 * 179.97438 * 17 16 15 19 19 C 1.34806 * 116.99846 * 185.81331 * 18 17 16 20 20 H 1.08002 * 120.00261 * 5.41527 * 19 18 17 21 21 C 1.38656 * 119.99991 * 185.40775 * 19 18 17 22 22 N 1.31565 * 120.00083 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00039 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47131 * 90.00192 * 23 21 19 25 25 H 1.48502 * 109.47544 * 210.00285 * 23 21 19 26 26 H 1.48502 * 109.47319 * 330.00314 * 23 21 19 27 27 C 1.38935 * 120.01834 * 0.02562 * 17 16 15 28 28 C 1.37972 * 120.00315 * 359.97438 * 27 17 16 29 29 H 1.08994 * 109.46854 * 305.53894 * 1 2 3 30 30 H 1.09004 * 109.46535 * 65.53292 * 1 2 3 31 31 H 1.08999 * 109.46927 * 185.53495 * 1 2 3 32 32 H 1.08993 * 109.47210 * 240.00139 * 2 1 3 33 33 H 1.09004 * 109.46914 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47130 * 299.99690 * 3 2 1 35 35 H 1.09002 * 109.47277 * 60.00136 * 3 2 1 36 36 H 1.09001 * 114.39593 * 27.41811 * 6 4 2 37 37 H 1.09002 * 114.08479 * 254.52565 * 6 4 2 38 38 H 1.08996 * 113.47202 * 218.97958 * 7 6 4 39 39 H 1.09004 * 113.52007 * 88.54983 * 7 6 4 40 40 H 0.97001 * 120.00016 * 354.81374 * 13 11 9 41 41 H 1.08001 * 119.99776 * 0.29393 * 15 14 13 42 42 H 1.07995 * 119.99579 * 179.97438 * 16 15 14 43 43 H 0.96992 * 119.99820 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.00158 * 180.02562 * 27 17 16 45 45 H 1.08000 * 119.99817 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 3.1138 -0.6039 1.3956 6 6 1.2139 -0.4228 2.5113 7 6 1.4478 -1.9125 2.7973 8 7 1.5846 -2.1162 1.3471 9 6 1.3857 -3.1347 0.4872 10 8 1.6841 -3.0084 -0.6823 11 6 0.7982 -4.4184 0.9735 12 8 0.4994 -4.5446 2.1432 13 7 0.5989 -5.4368 0.1134 14 6 0.1513 -6.6733 0.5863 15 6 0.5646 -7.1323 1.8315 16 6 0.1271 -8.3557 2.2956 17 6 -0.7269 -9.1286 1.5186 18 8 -1.1568 -10.3325 1.9754 19 6 -1.8842 -11.0851 1.1258 20 1 -2.0268 -10.7624 0.1051 21 6 -2.4494 -12.2736 1.5625 22 7 -2.2760 -12.6666 2.8061 23 14 -3.4568 -13.3168 0.3852 24 1 -2.5660 -14.2831 -0.3061 25 1 -4.4958 -14.0574 1.1450 26 1 -4.1095 -12.4392 -0.6193 27 6 -1.1402 -8.6701 0.2739 28 6 -0.7030 -7.4467 -0.1908 29 1 -0.3633 0.5973 0.8362 30 1 -0.3632 0.4257 -0.9354 31 1 -0.3633 -1.0229 0.0991 32 1 1.8934 -0.5138 -0.8899 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 0.1733 -0.1629 2.3171 37 1 1.7042 0.2498 3.2151 38 1 0.5801 -2.4137 3.2261 39 1 2.3652 -2.1103 3.3518 40 1 0.7660 -5.3114 -0.8338 41 1 1.2278 -6.5311 2.4357 42 1 0.4485 -8.7125 3.2629 43 1 -2.6717 -13.4978 3.1116 44 1 -1.8043 -9.2709 -0.3297 45 1 -1.0246 -7.0903 -1.1582 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326113819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:18 Heat of formation + Delta-G solvation = -24.921615 kcal Electronic energy + Delta-G solvation = -27730.859087 eV Core-core repulsion = 23716.062060 eV Total energy + Delta-G solvation = -4014.797027 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.31643 -40.04327 -38.79247 -37.90954 -36.58704 -34.83671 -34.01223 -32.23024 -30.31479 -30.18758 -28.27425 -27.56306 -26.32908 -25.52389 -24.46401 -22.51043 -22.22190 -21.25319 -20.42142 -19.17779 -18.15155 -17.89823 -17.34436 -16.90541 -16.46981 -16.17209 -15.74617 -15.18687 -14.85633 -14.60937 -14.36836 -13.99851 -13.89724 -13.61619 -13.53103 -13.44062 -13.18146 -12.86950 -12.70624 -12.67340 -12.56403 -11.95399 -11.94744 -11.79470 -11.66031 -11.64543 -11.44198 -11.32343 -11.22225 -11.09573 -10.69824 -10.49244 -10.46067 -9.80256 -9.50161 -9.27124 -9.08766 -8.76619 -8.27732 -7.00815 -6.48914 -4.06532 1.28952 2.03514 2.13354 2.30602 3.10357 3.11851 3.16720 3.23110 3.36876 3.93421 3.94386 4.32498 4.41599 4.51786 4.52700 4.56294 4.73873 4.90359 5.04705 5.06532 5.20305 5.24533 5.26838 5.28309 5.34988 5.51142 5.53183 5.55883 5.56729 5.69513 5.77040 5.79071 5.98707 6.01909 6.04644 6.13373 6.17525 6.70950 6.75275 6.83780 7.05124 7.15374 7.23862 7.29793 7.42252 7.67026 7.74477 7.95292 8.11876 8.96261 9.65546 10.68754 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032776 B = 0.002065 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.065626 B =13555.226433 C =13969.453450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C -0.142 4.142 4 C 0.139 3.861 5 H 0.097 0.903 6 C -0.159 4.159 7 C 0.103 3.897 8 N -0.618 5.618 9 C 0.539 3.461 10 O -0.522 6.522 11 C 0.499 3.501 12 O -0.505 6.505 13 N -0.627 5.627 14 C 0.027 3.973 15 C -0.063 4.063 16 C -0.178 4.178 17 C 0.150 3.850 18 O -0.173 6.173 19 C -0.392 4.392 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.859 5.859 23 Si 0.942 3.058 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.219 4.219 28 C -0.082 4.082 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.413 0.587 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.271 0.729 44 H 0.133 0.867 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.456 25.294 -3.351 26.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 C -0.200 4.200 4 C 0.037 3.963 5 H 0.115 0.885 6 C -0.197 4.197 7 C -0.020 4.020 8 N -0.354 5.354 9 C 0.323 3.677 10 O -0.399 6.399 11 C 0.280 3.720 12 O -0.380 6.380 13 N -0.273 5.273 14 C -0.065 4.065 15 C -0.083 4.083 16 C -0.198 4.198 17 C 0.095 3.905 18 O -0.076 6.076 19 C -0.468 4.468 20 H 0.110 0.890 21 C -0.166 4.166 22 N -0.494 5.494 23 Si 0.767 3.233 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.192 1.192 27 C -0.239 4.239 28 C -0.102 4.102 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.122 0.878 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.249 0.751 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.081 0.919 44 H 0.151 0.849 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.337 24.756 -2.924 25.985 hybrid contribution -0.383 -0.553 -1.133 1.317 sum 6.954 24.202 -4.056 25.506 Atomic orbital electron populations 1.21857 0.94673 1.01930 1.01629 1.21291 0.96655 0.96323 0.98202 1.21751 1.00965 0.95108 1.02158 1.22979 0.99074 0.78649 0.95592 0.88536 1.23733 1.02236 0.96649 0.97033 1.23075 1.03392 0.94346 0.81164 1.49457 1.64338 1.11638 1.09957 1.19714 0.79414 0.83343 0.85216 1.90745 1.50999 1.81381 1.16732 1.19962 0.80795 0.84488 0.86714 1.90758 1.48874 1.81683 1.16714 1.42892 1.63586 1.09408 1.11372 1.17209 1.04926 0.86616 0.97738 1.20551 0.98672 0.94548 0.94538 1.20094 1.03046 0.95258 1.01364 1.19444 0.92509 0.86538 0.91974 1.83994 1.60767 1.22543 1.40281 1.21333 1.30479 1.01904 0.93098 0.88990 1.25315 0.97371 0.96897 0.96971 1.70040 1.41876 1.22259 1.15216 0.85697 0.79029 0.79524 0.79098 1.19837 1.20236 1.19167 1.20991 1.06742 0.97778 0.98362 1.20508 0.95893 0.94769 0.99024 0.92247 0.92619 0.92797 0.89600 0.92551 0.92256 0.92369 0.87824 0.88964 0.88608 0.89324 0.75068 0.85940 0.85945 0.91926 0.84897 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.19 37.16 0.30 -0.86 16 2 C -0.11 -0.83 2.75 -90.61 -0.25 -1.08 16 3 C -0.14 -0.78 9.17 37.16 0.34 -0.44 16 4 C 0.14 1.06 3.82 -72.24 -0.28 0.79 16 5 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 6 C -0.16 -0.91 7.67 -26.08 -0.20 -1.11 16 7 C 0.10 0.85 7.71 -8.50 -0.07 0.78 16 8 N -0.62 -6.63 3.01 -177.81 -0.53 -7.16 16 9 C 0.54 7.34 7.55 -11.65 -0.09 7.26 16 10 O -0.52 -7.84 16.22 5.49 0.09 -7.76 16 11 C 0.50 7.67 7.61 -11.65 -0.09 7.58 16 12 O -0.51 -8.68 12.88 5.46 0.07 -8.61 16 13 N -0.63 -9.61 5.32 -10.27 -0.05 -9.66 16 14 C 0.03 0.49 6.25 -83.69 -0.52 -0.03 16 15 C -0.06 -1.23 8.65 -39.40 -0.34 -1.57 16 16 C -0.18 -3.84 9.98 -39.42 -0.39 -4.23 16 17 C 0.15 3.60 6.65 -39.06 -0.26 3.34 16 18 O -0.17 -4.88 9.75 0.11 0.00 -4.88 16 19 C -0.39 -10.78 9.44 30.89 0.29 -10.49 16 20 H 0.09 2.32 5.29 -52.49 -0.28 2.04 16 21 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 22 N -0.86 -24.96 13.67 55.48 0.76 -24.20 16 23 Si 0.94 20.25 29.55 -169.99 -5.02 15.23 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 27 C -0.22 -4.67 9.12 -39.42 -0.36 -5.03 16 28 C -0.08 -1.49 9.96 -39.40 -0.39 -1.88 16 29 H 0.06 0.39 6.46 -51.93 -0.34 0.05 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.56 7.22 -51.93 -0.37 0.18 16 32 H 0.09 0.88 7.37 -51.93 -0.38 0.50 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.10 0.61 5.73 -51.93 -0.30 0.32 16 37 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.10 0.94 7.20 -51.93 -0.37 0.56 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.41 5.45 8.30 -40.82 -0.34 5.11 16 41 H 0.12 2.27 6.50 -52.49 -0.34 1.92 16 42 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 43 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.13 2.80 5.71 -52.49 -0.30 2.50 16 45 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 372.94 15.07 5.62 5.62 Total: -1.00 -32.53 372.94 -7.43 -39.96 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -5.96 Total: 7.46 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -2.40 Total: -6.00 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.17 Total: -41.03 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: 0.16 Total: -21.25 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.53 -7.43 -39.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326113819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.039 kcal (2) G-P(sol) polarization free energy of solvation -32.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds