Wall clock time and date at job start Tue Mar 31 2020 16:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46979 * 2 1 4 4 C 1.53001 * 109.47128 * 119.99671 * 2 1 3 5 5 H 1.08997 * 112.78628 * 190.01259 * 4 2 1 6 6 C 1.53759 * 113.55219 * 320.87650 * 4 2 1 7 7 C 1.53491 * 83.26250 * 140.98201 * 6 4 2 8 8 N 1.47073 * 87.98570 * 333.76315 * 7 6 4 9 9 C 1.34777 * 136.05843 * 207.08922 * 8 7 6 10 10 O 1.21358 * 119.99717 * 185.03546 * 9 8 7 11 11 C 1.49319 * 119.99657 * 5.03186 * 9 8 7 12 12 O 1.21387 * 120.00408 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99657 * 179.97438 * 11 9 8 14 14 C 1.39743 * 119.99899 * 174.81233 * 13 11 9 15 15 C 1.38992 * 120.01024 * 325.25505 * 14 13 11 16 16 C 1.37966 * 119.99692 * 180.27607 * 15 14 13 17 17 C 1.38939 * 120.00254 * 359.97438 * 16 15 14 18 18 O 1.35753 * 119.98880 * 179.97438 * 17 16 15 19 19 C 1.34806 * 116.99846 * 185.81331 * 18 17 16 20 20 H 1.08002 * 120.00261 * 5.41527 * 19 18 17 21 21 C 1.38656 * 119.99991 * 185.40775 * 19 18 17 22 22 N 1.31565 * 120.00083 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00039 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47131 * 90.00192 * 23 21 19 25 25 H 1.48502 * 109.47544 * 210.00285 * 23 21 19 26 26 H 1.48502 * 109.47319 * 330.00314 * 23 21 19 27 27 C 1.38935 * 120.01834 * 0.02562 * 17 16 15 28 28 C 1.37972 * 120.00315 * 359.97438 * 27 17 16 29 29 H 1.08994 * 109.46854 * 305.53894 * 1 2 3 30 30 H 1.09004 * 109.46535 * 65.53292 * 1 2 3 31 31 H 1.08999 * 109.46927 * 185.53495 * 1 2 3 32 32 H 1.08993 * 109.47210 * 240.00139 * 2 1 3 33 33 H 1.09004 * 109.46914 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47130 * 299.99690 * 3 2 1 35 35 H 1.09002 * 109.47277 * 60.00136 * 3 2 1 36 36 H 1.09001 * 114.39593 * 27.41811 * 6 4 2 37 37 H 1.09002 * 114.08479 * 254.52565 * 6 4 2 38 38 H 1.08996 * 113.47202 * 218.97958 * 7 6 4 39 39 H 1.09004 * 113.52007 * 88.54983 * 7 6 4 40 40 H 0.97001 * 120.00016 * 354.81374 * 13 11 9 41 41 H 1.08001 * 119.99776 * 0.29393 * 15 14 13 42 42 H 1.07995 * 119.99579 * 179.97438 * 16 15 14 43 43 H 0.96992 * 119.99820 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.00158 * 180.02562 * 27 17 16 45 45 H 1.08000 * 119.99817 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 3.1138 -0.6039 1.3956 6 6 1.2139 -0.4228 2.5113 7 6 1.4478 -1.9125 2.7973 8 7 1.5846 -2.1162 1.3471 9 6 1.3857 -3.1347 0.4872 10 8 1.6841 -3.0084 -0.6823 11 6 0.7982 -4.4184 0.9735 12 8 0.4994 -4.5446 2.1432 13 7 0.5989 -5.4368 0.1134 14 6 0.1513 -6.6733 0.5863 15 6 0.5646 -7.1323 1.8315 16 6 0.1271 -8.3557 2.2956 17 6 -0.7269 -9.1286 1.5186 18 8 -1.1568 -10.3325 1.9754 19 6 -1.8842 -11.0851 1.1258 20 1 -2.0268 -10.7624 0.1051 21 6 -2.4494 -12.2736 1.5625 22 7 -2.2760 -12.6666 2.8061 23 14 -3.4568 -13.3168 0.3852 24 1 -2.5660 -14.2831 -0.3061 25 1 -4.4958 -14.0574 1.1450 26 1 -4.1095 -12.4392 -0.6193 27 6 -1.1402 -8.6701 0.2739 28 6 -0.7030 -7.4467 -0.1908 29 1 -0.3633 0.5973 0.8362 30 1 -0.3632 0.4257 -0.9354 31 1 -0.3633 -1.0229 0.0991 32 1 1.8934 -0.5138 -0.8899 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 0.1733 -0.1629 2.3171 37 1 1.7042 0.2498 3.2151 38 1 0.5801 -2.4137 3.2261 39 1 2.3652 -2.1103 3.3518 40 1 0.7660 -5.3114 -0.8338 41 1 1.2278 -6.5311 2.4357 42 1 0.4485 -8.7125 3.2629 43 1 -2.6717 -13.4978 3.1116 44 1 -1.8043 -9.2709 -0.3297 45 1 -1.0246 -7.0903 -1.1582 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326113819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:17 Heat of formation + Delta-G solvation = -46.075181 kcal Electronic energy + Delta-G solvation = -27731.776374 eV Core-core repulsion = 23716.062060 eV Total energy + Delta-G solvation = -4015.714314 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.29177 -41.28085 -40.37504 -39.02737 -38.22040 -35.67170 -35.30671 -34.17899 -31.95908 -31.05377 -29.84854 -28.10216 -27.48809 -26.94547 -25.62079 -23.99786 -23.33824 -22.42501 -21.55823 -20.27689 -19.83022 -19.04334 -18.86514 -18.17250 -17.59533 -17.22123 -16.80578 -16.39370 -16.26332 -16.10504 -15.59752 -15.52222 -15.33627 -14.80906 -14.64330 -14.56015 -14.23648 -14.14630 -13.95246 -13.63329 -13.38794 -13.30517 -13.28217 -13.16433 -12.80433 -12.70083 -12.54258 -12.40443 -12.21117 -12.11515 -11.92629 -11.81613 -11.48418 -11.13375 -11.10070 -10.67165 -10.55082 -9.91612 -9.90472 -8.71540 -8.47296 -6.14380 0.03775 0.47122 0.68475 1.09639 1.37084 1.45977 1.54462 2.04848 2.17909 2.31184 2.77872 3.11823 3.16847 3.40182 3.45732 3.81358 3.89080 3.98955 4.00567 4.05409 4.16620 4.35624 4.43265 4.43902 4.50815 4.60840 4.62333 4.66911 4.77853 4.81092 4.96011 5.01769 5.02944 5.06496 5.08782 5.21198 5.22751 5.26047 5.34582 5.41318 5.44255 5.48054 5.60947 5.96068 6.00334 6.12575 6.35270 6.61253 6.87816 6.97030 7.75616 8.75593 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032776 B = 0.002065 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.065626 B =13555.226433 C =13969.453450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 C -0.136 4.136 4 C 0.133 3.867 5 H 0.116 0.884 6 C -0.136 4.136 7 C 0.093 3.907 8 N -0.619 5.619 9 C 0.537 3.463 10 O -0.543 6.543 11 C 0.500 3.500 12 O -0.524 6.524 13 N -0.624 5.624 14 C 0.052 3.948 15 C -0.065 4.065 16 C -0.184 4.184 17 C 0.114 3.886 18 O -0.226 6.226 19 C -0.413 4.413 20 H 0.106 0.894 21 C -0.023 4.023 22 N -0.919 5.919 23 Si 1.020 2.980 24 H -0.264 1.264 25 H -0.273 1.273 26 H -0.251 1.251 27 C -0.219 4.219 28 C -0.074 4.074 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.026 0.974 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.129 0.871 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.426 0.574 41 H 0.133 0.867 42 H 0.120 0.880 43 H 0.273 0.727 44 H 0.134 0.866 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.938 28.674 -4.628 30.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.194 4.194 4 C 0.033 3.967 5 H 0.133 0.867 6 C -0.173 4.173 7 C -0.028 4.028 8 N -0.354 5.354 9 C 0.321 3.679 10 O -0.422 6.422 11 C 0.283 3.717 12 O -0.399 6.399 13 N -0.271 5.271 14 C -0.041 4.041 15 C -0.085 4.085 16 C -0.204 4.204 17 C 0.063 3.937 18 O -0.132 6.132 19 C -0.489 4.489 20 H 0.124 0.876 21 C -0.221 4.221 22 N -0.557 5.557 23 Si 0.839 3.161 24 H -0.188 1.188 25 H -0.198 1.198 26 H -0.174 1.174 27 C -0.239 4.239 28 C -0.094 4.094 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.121 0.879 37 H 0.147 0.853 38 H 0.096 0.904 39 H 0.125 0.875 40 H 0.265 0.735 41 H 0.151 0.849 42 H 0.138 0.862 43 H 0.082 0.918 44 H 0.152 0.848 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 7.854 28.236 -4.209 29.608 hybrid contribution -0.358 -1.192 -0.721 1.438 sum 7.496 27.044 -4.930 28.493 Atomic orbital electron populations 1.21848 0.95028 1.00512 1.02497 1.21259 0.96319 0.97686 0.97083 1.21710 1.01393 0.93255 1.03012 1.23340 1.00518 0.76465 0.96426 0.86674 1.23700 1.02251 0.95241 0.96157 1.23346 1.03631 0.96108 0.79734 1.49750 1.62689 1.12019 1.10947 1.19286 0.79980 0.83248 0.85392 1.90737 1.52376 1.81634 1.17434 1.20443 0.79850 0.85146 0.86286 1.90754 1.49380 1.82226 1.17586 1.42855 1.63559 1.08431 1.12251 1.17343 1.02813 0.87211 0.96735 1.20673 0.98706 0.93722 0.95388 1.20235 1.02905 0.95916 1.01373 1.19900 0.93792 0.86386 0.93661 1.83962 1.63002 1.24544 1.41676 1.21859 1.30575 1.02558 0.93902 0.87640 1.26623 0.98487 0.98080 0.98925 1.70189 1.44379 1.23341 1.17755 0.84567 0.77207 0.77558 0.76775 1.18842 1.19815 1.17411 1.21123 1.06575 0.98845 0.97323 1.20827 0.94800 0.93297 1.00491 0.90271 0.92687 0.95497 0.92502 0.91847 0.92329 0.90620 0.87889 0.85328 0.90392 0.87518 0.73476 0.84876 0.86223 0.91807 0.84802 0.82772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.19 71.98 0.59 -1.46 16 2 C -0.10 -1.41 2.75 -10.79 -0.03 -1.44 16 3 C -0.14 -1.06 9.17 71.98 0.66 -0.40 16 4 C 0.13 1.65 3.82 41.89 0.16 1.81 16 5 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 6 C -0.14 -1.05 7.67 31.02 0.24 -0.81 16 7 C 0.09 1.32 7.71 83.18 0.64 1.96 16 8 N -0.62 -12.12 3.01 -834.84 -2.51 -14.63 16 9 C 0.54 13.99 7.55 87.23 0.66 14.65 16 10 O -0.54 -15.80 16.22 -3.27 -0.05 -15.85 16 11 C 0.50 14.71 7.61 87.23 0.66 15.37 16 12 O -0.52 -17.43 12.88 -3.36 -0.04 -17.47 16 13 N -0.62 -17.92 5.32 -304.75 -1.62 -19.54 16 14 C 0.05 1.80 6.25 38.24 0.24 2.04 16 15 C -0.07 -2.50 8.65 22.39 0.19 -2.30 16 16 C -0.18 -8.21 9.98 22.37 0.22 -7.99 16 17 C 0.11 5.67 6.65 22.60 0.15 5.82 16 18 O -0.23 -13.47 9.75 -22.53 -0.22 -13.69 16 19 C -0.41 -23.63 9.44 67.92 0.64 -22.99 16 20 H 0.11 5.45 5.29 -2.91 -0.02 5.43 16 21 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 22 N -0.92 -56.09 13.67 21.61 0.30 -55.79 16 23 Si 1.02 42.25 29.55 68.60 2.03 44.28 16 24 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 25 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 26 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 27 C -0.22 -9.32 9.12 22.37 0.20 -9.11 16 28 C -0.07 -2.56 9.96 22.39 0.22 -2.34 16 29 H 0.08 0.80 6.46 -2.39 -0.02 0.79 16 30 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.03 0.53 7.22 -2.39 -0.02 0.51 16 32 H 0.06 1.12 7.37 -2.39 -0.02 1.10 16 33 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 34 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.10 0.86 5.73 -2.39 -0.01 0.84 16 37 H 0.13 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.08 1.41 7.20 -2.39 -0.02 1.39 16 39 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.43 10.27 8.30 -92.71 -0.77 9.50 16 41 H 0.13 4.83 6.50 -2.91 -0.02 4.81 16 42 H 0.12 5.25 8.06 -2.91 -0.02 5.23 16 43 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 44 H 0.13 5.62 5.71 -2.91 -0.02 5.60 16 45 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -75.59 372.94 4.06 -71.52 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: 0.27 Total: 29.23 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 5.92 Total: -8.05 kcal Atomic # 7 Polarization: -86.13 SS G_CDS: -3.84 Total: -89.97 kcal Atomic # 8 Polarization: -46.70 SS G_CDS: -0.32 Total: -47.01 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -75.59 4.06 -71.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326113819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.446 kcal (2) G-P(sol) polarization free energy of solvation -75.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds