Wall clock time and date at job start Tue Mar 31 2020 17:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46976 * 2 1 4 4 H 1.08990 * 109.47442 * 304.99798 * 3 2 1 5 5 C 1.53003 * 109.46514 * 184.99940 * 3 2 1 6 6 N 1.46496 * 109.47172 * 65.00621 * 3 2 1 7 7 C 1.47319 * 126.68603 * 240.01689 * 6 3 2 8 8 C 1.51585 * 103.59004 * 179.76658 * 7 6 3 9 9 O 1.21231 * 127.15269 * 180.24149 * 8 7 6 10 10 N 1.34764 * 105.68544 * 0.31886 * 8 7 6 11 11 C 1.46499 * 124.17811 * 179.97438 * 10 8 7 12 12 C 1.50694 * 109.47224 * 269.70409 * 11 10 8 13 13 C 1.38326 * 119.96967 * 90.00138 * 12 11 10 14 14 C 1.38282 * 120.14127 * 180.02562 * 13 12 11 15 15 C 1.38124 * 120.06316 * 359.97005 * 14 13 12 16 16 C 1.38847 * 119.93523 * 0.02679 * 15 14 13 17 17 O 1.35758 * 120.07120 * 179.97438 * 16 15 14 18 18 C 1.34828 * 116.99839 * 354.46782 * 17 16 15 19 19 H 1.08009 * 119.99896 * 5.05176 * 18 17 16 20 20 C 1.38650 * 120.00179 * 185.05847 * 18 17 16 21 21 N 1.31554 * 119.99783 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00231 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47090 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47138 * 119.99721 * 22 20 18 25 25 H 1.48493 * 109.47211 * 239.99655 * 22 20 18 26 26 C 1.38076 * 119.96265 * 269.72239 * 12 11 10 27 27 C 1.33789 * 111.64585 * 359.65747 * 10 8 7 28 28 O 1.21542 * 123.77384 * 180.22716 * 27 10 8 29 29 H 1.09003 * 109.47405 * 59.99646 * 1 2 3 30 30 H 1.08998 * 109.47493 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47155 * 299.99808 * 1 2 3 32 32 H 1.09004 * 109.46664 * 240.00027 * 2 1 3 33 33 H 1.08996 * 109.46763 * 120.00240 * 2 1 3 34 34 H 1.09004 * 109.46610 * 180.02562 * 5 3 2 35 35 H 1.08993 * 109.47534 * 299.99694 * 5 3 2 36 36 H 1.08995 * 109.47389 * 60.00409 * 5 3 2 37 37 H 1.09005 * 110.59715 * 298.48721 * 7 6 3 38 38 H 1.08998 * 110.59856 * 61.27725 * 7 6 3 39 39 H 1.09000 * 109.47060 * 149.69761 * 11 10 8 40 40 H 1.09002 * 109.46971 * 29.70227 * 11 10 8 41 41 H 1.08000 * 119.92955 * 359.97331 * 13 12 11 42 42 H 1.07991 * 119.96439 * 179.97438 * 14 13 12 43 43 H 1.08002 * 120.03138 * 180.02562 * 15 14 13 44 44 H 0.97007 * 119.99909 * 180.02562 * 21 20 18 45 45 H 1.08002 * 120.03781 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5648 1.4442 -0.1257 6 7 1.6525 2.0974 1.2518 7 6 0.8093 3.2971 1.3932 8 6 0.7429 3.5112 2.8924 9 8 0.1487 4.3888 3.4810 10 7 1.4832 2.5241 3.4345 11 6 1.6936 2.3487 4.8736 12 6 2.9228 3.1101 5.2981 13 6 2.8128 4.4263 5.7091 14 6 3.9385 5.1285 6.0988 15 6 5.1768 4.5169 6.0792 16 6 5.2906 3.1958 5.6673 17 8 6.5063 2.5921 5.6465 18 6 7.5769 3.3620 5.9274 19 1 7.4385 4.3881 6.2347 20 6 8.8556 2.8365 5.8216 21 7 9.0243 1.5866 5.4476 22 14 10.3390 3.9034 6.2100 23 1 9.8830 5.2607 6.6038 24 1 11.1072 3.2957 7.3261 25 1 11.2059 4.0022 5.0085 26 6 4.1571 2.4914 5.2818 27 6 1.9966 1.7202 2.4964 28 8 2.6958 0.7566 2.7413 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.9282 2.4719 -0.1253 35 1 3.9995 0.9052 0.7161 36 1 3.8532 0.9569 -1.0571 37 1 1.2730 4.1520 0.9008 38 1 -0.1862 3.1161 0.9878 39 1 1.8276 1.2899 5.0949 40 1 0.8269 2.7264 5.4162 41 1 1.8457 4.9069 5.7248 42 1 3.8493 6.1561 6.4187 43 1 6.0556 5.0656 6.3841 44 1 9.9189 1.2188 5.3740 45 1 4.2419 1.4625 4.9647 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328257944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:08 Heat of formation + Delta-G solvation = -43.356013 kcal Electronic energy + Delta-G solvation = -28993.184222 eV Core-core repulsion = 24977.587820 eV Total energy + Delta-G solvation = -4015.596402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.32680 -39.06490 -38.69764 -37.13778 -36.41029 -35.76911 -33.63736 -32.26978 -31.01067 -30.12153 -29.06213 -27.56573 -26.36272 -25.20450 -24.07583 -22.77422 -22.23286 -21.43470 -20.79746 -19.37334 -17.91178 -17.45279 -17.22477 -16.68155 -16.43578 -15.84771 -15.30012 -15.01753 -14.70559 -14.52831 -14.41273 -14.19912 -14.07225 -13.81115 -13.66635 -13.52700 -13.49838 -13.23025 -12.70596 -12.46218 -12.41336 -12.01721 -11.94762 -11.60216 -11.56328 -11.36657 -11.26211 -11.22040 -10.99411 -10.89201 -10.62500 -10.53382 -10.44106 -10.01988 -9.67755 -9.29522 -9.03061 -8.83989 -8.17066 -7.24474 -6.42994 -4.02266 1.65828 1.76812 2.30732 2.40053 2.96830 3.12092 3.13221 3.14407 3.19825 3.96659 3.98789 4.38802 4.56502 4.70357 4.76728 4.85625 4.92590 5.00468 5.06181 5.11659 5.14405 5.32149 5.37315 5.45143 5.49505 5.53916 5.67903 5.69947 5.72878 5.80985 5.84562 5.95570 5.97735 6.12399 6.16434 6.29313 6.36861 6.48350 6.62443 6.90427 7.07222 7.17670 7.29581 7.34850 7.38674 7.43744 7.79050 8.01257 8.19085 9.02145 9.72840 10.74907 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013325 B = 0.003457 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.744225 B = 8097.931248 C = 9471.242571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C 0.184 3.816 4 H 0.094 0.906 5 C -0.173 4.173 6 N -0.624 5.624 7 C 0.062 3.938 8 C 0.523 3.477 9 O -0.473 6.473 10 N -0.568 5.568 11 C 0.167 3.833 12 C -0.084 4.084 13 C -0.190 4.190 14 C -0.079 4.079 15 C -0.225 4.225 16 C 0.149 3.851 17 O -0.177 6.177 18 C -0.392 4.392 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.860 5.860 22 Si 0.940 3.060 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.160 4.160 27 C 0.700 3.300 28 O -0.527 6.527 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.127 0.873 44 H 0.269 0.731 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.179 1.301 -11.598 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.183 4.183 3 C 0.083 3.917 4 H 0.112 0.888 5 C -0.231 4.231 6 N -0.365 5.365 7 C -0.064 4.064 8 C 0.310 3.690 9 O -0.344 6.344 10 N -0.313 5.313 11 C 0.047 3.953 12 C -0.085 4.085 13 C -0.210 4.210 14 C -0.098 4.098 15 C -0.244 4.244 16 C 0.095 3.905 17 O -0.080 6.080 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.765 3.235 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.202 1.202 26 C -0.180 4.180 27 C 0.402 3.598 28 O -0.399 6.399 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.145 0.855 44 H 0.079 0.921 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.800 0.759 -11.271 20.245 hybrid contribution 0.844 0.766 0.225 1.162 sum -15.956 1.526 -11.047 19.467 Atomic orbital electron populations 1.21727 0.95653 1.01739 1.01400 1.22013 0.96233 0.95975 1.04037 1.20953 0.95683 0.92932 0.82169 0.88804 1.22242 0.94254 1.03095 1.03537 1.47796 1.53498 1.29623 1.05554 1.22480 0.98383 0.90723 0.94800 1.20812 0.77516 0.80631 0.90053 1.90790 1.41973 1.32143 1.69473 1.46549 1.47359 1.28249 1.09154 1.20511 0.97061 1.01891 0.75817 1.19372 0.93182 0.94611 1.01303 1.20523 0.98080 0.94350 1.08012 1.20722 0.92302 0.98487 0.98244 1.21238 0.98173 0.96109 1.08923 1.19320 0.87259 0.90992 0.92933 1.83997 1.10763 1.36528 1.76725 1.21364 0.82741 0.95799 1.46937 0.89100 1.25286 0.98007 0.96574 0.96645 1.70060 1.23099 1.12964 1.43400 0.85657 0.80230 0.79236 0.78357 1.19129 1.20121 1.20153 1.20160 0.90076 1.00788 1.06943 1.15897 0.80214 0.82751 0.80913 1.90987 1.38894 1.27654 1.82359 0.92875 0.92619 0.93051 0.90444 0.89853 0.92128 0.90362 0.91113 0.86381 0.86548 0.88115 0.88376 0.87291 0.87350 0.85522 0.92084 0.85965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.80 37.16 0.36 -0.73 16 2 C -0.14 -1.27 5.38 -26.73 -0.14 -1.41 16 3 C 0.18 1.63 2.97 -67.93 -0.20 1.43 16 4 H 0.09 0.56 8.12 -51.93 -0.42 0.14 16 5 C -0.17 -1.84 9.23 37.16 0.34 -1.50 16 6 N -0.62 -6.76 2.34 -172.39 -0.40 -7.16 16 7 C 0.06 0.53 7.65 -4.31 -0.03 0.50 16 8 C 0.52 6.60 8.31 -10.56 -0.09 6.51 16 9 O -0.47 -7.01 17.75 5.60 0.10 -6.91 16 10 N -0.57 -8.13 2.59 -122.03 -0.32 -8.44 16 11 C 0.17 2.51 5.82 -5.20 -0.03 2.48 16 12 C -0.08 -1.55 5.46 -104.65 -0.57 -2.13 16 13 C -0.19 -3.46 9.70 -39.53 -0.38 -3.85 16 14 C -0.08 -1.51 10.04 -39.61 -0.40 -1.91 16 15 C -0.22 -5.03 9.17 -39.40 -0.36 -5.39 16 16 C 0.15 3.71 6.65 -39.11 -0.26 3.45 16 17 O -0.18 -5.18 9.76 0.03 0.00 -5.18 16 18 C -0.39 -11.17 9.49 30.88 0.29 -10.87 16 19 H 0.09 2.40 5.20 -52.48 -0.27 2.13 16 20 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 21 N -0.86 -25.66 13.67 55.48 0.76 -24.90 16 22 Si 0.94 20.80 29.55 -169.99 -5.02 15.78 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 26 C -0.16 -3.56 9.64 -39.39 -0.38 -3.94 16 27 C 0.70 10.33 7.77 -88.02 -0.68 9.65 16 28 O -0.53 -9.57 14.83 5.33 0.08 -9.49 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.43 7.75 -51.93 -0.40 0.03 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.99 6.81 -51.93 -0.35 0.64 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 1.12 6.96 -51.93 -0.36 0.76 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 1.48 7.80 -51.93 -0.41 1.07 16 40 H 0.10 1.28 7.94 -51.93 -0.41 0.87 16 41 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 43 H 0.13 2.82 5.64 -52.49 -0.30 2.53 16 44 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 45 H 0.12 2.82 8.06 -52.49 -0.42 2.39 16 LS Contribution 380.09 15.07 5.73 5.73 Total: -1.00 -34.38 380.09 -8.00 -42.38 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.29 Total: 4.89 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -2.63 Total: -6.69 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.04 Total: -40.51 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: 0.18 Total: -21.58 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.38 -8.00 -42.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328257944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.978 kcal (2) G-P(sol) polarization free energy of solvation -34.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds