Wall clock time and date at job start Tue Mar 31 2020 17:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46976 * 2 1 4 4 H 1.08990 * 109.47442 * 304.99798 * 3 2 1 5 5 C 1.53003 * 109.46514 * 184.99940 * 3 2 1 6 6 N 1.46496 * 109.47172 * 65.00621 * 3 2 1 7 7 C 1.47319 * 126.68603 * 240.01689 * 6 3 2 8 8 C 1.51585 * 103.59004 * 179.76658 * 7 6 3 9 9 O 1.21231 * 127.15269 * 180.24149 * 8 7 6 10 10 N 1.34764 * 105.68544 * 0.31886 * 8 7 6 11 11 C 1.46499 * 124.17811 * 179.97438 * 10 8 7 12 12 C 1.50694 * 109.47224 * 269.70409 * 11 10 8 13 13 C 1.38326 * 119.96967 * 90.00138 * 12 11 10 14 14 C 1.38282 * 120.14127 * 180.02562 * 13 12 11 15 15 C 1.38124 * 120.06316 * 359.97005 * 14 13 12 16 16 C 1.38847 * 119.93523 * 0.02679 * 15 14 13 17 17 O 1.35758 * 120.07120 * 179.97438 * 16 15 14 18 18 C 1.34828 * 116.99839 * 354.46782 * 17 16 15 19 19 H 1.08009 * 119.99896 * 5.05176 * 18 17 16 20 20 C 1.38650 * 120.00179 * 185.05847 * 18 17 16 21 21 N 1.31554 * 119.99783 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00231 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47090 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47138 * 119.99721 * 22 20 18 25 25 H 1.48493 * 109.47211 * 239.99655 * 22 20 18 26 26 C 1.38076 * 119.96265 * 269.72239 * 12 11 10 27 27 C 1.33789 * 111.64585 * 359.65747 * 10 8 7 28 28 O 1.21542 * 123.77384 * 180.22716 * 27 10 8 29 29 H 1.09003 * 109.47405 * 59.99646 * 1 2 3 30 30 H 1.08998 * 109.47493 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47155 * 299.99808 * 1 2 3 32 32 H 1.09004 * 109.46664 * 240.00027 * 2 1 3 33 33 H 1.08996 * 109.46763 * 120.00240 * 2 1 3 34 34 H 1.09004 * 109.46610 * 180.02562 * 5 3 2 35 35 H 1.08993 * 109.47534 * 299.99694 * 5 3 2 36 36 H 1.08995 * 109.47389 * 60.00409 * 5 3 2 37 37 H 1.09005 * 110.59715 * 298.48721 * 7 6 3 38 38 H 1.08998 * 110.59856 * 61.27725 * 7 6 3 39 39 H 1.09000 * 109.47060 * 149.69761 * 11 10 8 40 40 H 1.09002 * 109.46971 * 29.70227 * 11 10 8 41 41 H 1.08000 * 119.92955 * 359.97331 * 13 12 11 42 42 H 1.07991 * 119.96439 * 179.97438 * 14 13 12 43 43 H 1.08002 * 120.03138 * 180.02562 * 15 14 13 44 44 H 0.97007 * 119.99909 * 180.02562 * 21 20 18 45 45 H 1.08002 * 120.03781 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5648 1.4442 -0.1257 6 7 1.6525 2.0974 1.2518 7 6 0.8093 3.2971 1.3932 8 6 0.7429 3.5112 2.8924 9 8 0.1487 4.3888 3.4810 10 7 1.4832 2.5241 3.4345 11 6 1.6936 2.3487 4.8736 12 6 2.9228 3.1101 5.2981 13 6 2.8128 4.4263 5.7091 14 6 3.9385 5.1285 6.0988 15 6 5.1768 4.5169 6.0792 16 6 5.2906 3.1958 5.6673 17 8 6.5063 2.5921 5.6465 18 6 7.5769 3.3620 5.9274 19 1 7.4385 4.3881 6.2347 20 6 8.8556 2.8365 5.8216 21 7 9.0243 1.5866 5.4476 22 14 10.3390 3.9034 6.2100 23 1 9.8830 5.2607 6.6038 24 1 11.1072 3.2957 7.3261 25 1 11.2059 4.0022 5.0085 26 6 4.1571 2.4914 5.2818 27 6 1.9966 1.7202 2.4964 28 8 2.6958 0.7566 2.7413 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.9282 2.4719 -0.1253 35 1 3.9995 0.9052 0.7161 36 1 3.8532 0.9569 -1.0571 37 1 1.2730 4.1520 0.9008 38 1 -0.1862 3.1161 0.9878 39 1 1.8276 1.2899 5.0949 40 1 0.8269 2.7264 5.4162 41 1 1.8457 4.9069 5.7248 42 1 3.8493 6.1561 6.4187 43 1 6.0556 5.0656 6.3841 44 1 9.9189 1.2188 5.3740 45 1 4.2419 1.4625 4.9647 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328257944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:07 Heat of formation + Delta-G solvation = -64.728531 kcal Electronic energy + Delta-G solvation = -28994.111004 eV Core-core repulsion = 24977.587820 eV Total energy + Delta-G solvation = -4016.523184 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.36092 -40.84301 -39.77494 -38.61310 -37.67711 -36.91020 -34.73724 -34.28043 -32.28744 -31.11079 -30.72148 -28.48384 -27.81029 -27.13248 -24.91765 -23.75144 -23.49720 -22.94113 -22.27346 -20.39344 -19.65546 -18.98773 -18.44970 -17.94295 -17.47550 -16.81868 -16.77141 -16.37822 -16.29723 -16.16025 -15.61413 -15.52983 -15.24750 -15.12729 -14.97811 -14.55801 -14.50137 -14.30340 -14.18527 -13.81281 -13.66793 -13.22423 -13.12956 -13.09167 -12.83803 -12.70159 -12.59762 -12.33955 -12.31045 -12.10817 -12.01229 -11.93258 -11.52534 -11.33937 -11.09156 -10.86357 -10.81831 -9.91523 -9.82195 -9.09305 -8.49745 -6.19449 0.25646 0.63737 0.68033 1.21399 1.32493 1.41822 1.51706 1.99070 2.07688 2.15093 2.77987 3.06834 3.13251 3.35862 3.61069 3.80472 3.91729 4.02824 4.08386 4.17436 4.25693 4.31735 4.33390 4.34736 4.44289 4.50618 4.56818 4.61247 4.62597 4.66562 4.72701 4.86448 4.94527 5.04059 5.07459 5.15445 5.19509 5.27476 5.32076 5.45549 5.56874 5.61146 5.64605 5.65329 5.98068 6.10814 6.19552 6.39636 6.93874 7.10435 7.74564 8.73814 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013325 B = 0.003457 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.744225 B = 8097.931248 C = 9471.242571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.142 4.142 3 C 0.182 3.818 4 H 0.144 0.856 5 C -0.172 4.172 6 N -0.615 5.615 7 C 0.071 3.929 8 C 0.519 3.481 9 O -0.494 6.494 10 N -0.576 5.576 11 C 0.168 3.832 12 C -0.071 4.071 13 C -0.168 4.168 14 C -0.071 4.071 15 C -0.232 4.232 16 C 0.112 3.888 17 O -0.233 6.233 18 C -0.415 4.415 19 H 0.104 0.896 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.022 2.978 23 H -0.249 1.249 24 H -0.267 1.267 25 H -0.268 1.268 26 C -0.176 4.176 27 C 0.689 3.311 28 O -0.576 6.576 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.040 0.960 32 H 0.094 0.906 33 H 0.040 0.960 34 H 0.055 0.945 35 H 0.029 0.971 36 H 0.094 0.906 37 H 0.148 0.852 38 H 0.162 0.838 39 H 0.094 0.906 40 H 0.127 0.873 41 H 0.143 0.857 42 H 0.150 0.850 43 H 0.123 0.877 44 H 0.273 0.727 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.051 4.577 -13.293 24.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.181 4.181 3 C 0.082 3.918 4 H 0.161 0.839 5 C -0.230 4.230 6 N -0.354 5.354 7 C -0.054 4.054 8 C 0.309 3.691 9 O -0.366 6.366 10 N -0.320 5.320 11 C 0.047 3.953 12 C -0.072 4.072 13 C -0.187 4.187 14 C -0.089 4.089 15 C -0.252 4.252 16 C 0.061 3.939 17 O -0.140 6.140 18 C -0.491 4.491 19 H 0.121 0.879 20 C -0.221 4.221 21 N -0.559 5.559 22 Si 0.840 3.160 23 H -0.172 1.172 24 H -0.192 1.192 25 H -0.193 1.193 26 C -0.196 4.196 27 C 0.391 3.609 28 O -0.451 6.451 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.113 0.887 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.113 0.887 37 H 0.165 0.835 38 H 0.179 0.821 39 H 0.113 0.887 40 H 0.145 0.855 41 H 0.161 0.839 42 H 0.168 0.832 43 H 0.141 0.859 44 H 0.082 0.918 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.755 4.080 -13.001 23.998 hybrid contribution 1.409 -0.222 0.702 1.590 sum -18.346 3.858 -12.299 22.421 Atomic orbital electron populations 1.21690 0.94077 1.01984 1.02182 1.21978 0.97517 0.95730 1.02850 1.21250 0.94428 0.93622 0.82530 0.83873 1.22228 0.95858 1.02220 1.02678 1.47981 1.52806 1.29993 1.04573 1.22796 1.00399 0.90408 0.91763 1.21457 0.76396 0.79526 0.91771 1.90781 1.42700 1.32683 1.70389 1.46583 1.47835 1.29028 1.08593 1.20483 0.96223 1.01354 0.77259 1.19735 0.92939 0.95155 0.99399 1.20966 0.99261 0.93571 1.04874 1.21160 0.90824 1.00239 0.96638 1.21353 0.99770 0.95014 1.09037 1.19846 0.86672 0.92739 0.94618 1.83967 1.12292 1.38305 1.79454 1.21900 0.83309 0.96488 1.47438 0.87918 1.26665 1.01259 0.98108 0.96115 1.70219 1.24074 1.15482 1.46140 0.84495 0.75331 0.77687 0.78438 1.17241 1.19228 1.19285 1.20197 0.91253 1.00016 1.08124 1.16211 0.79993 0.82389 0.82287 1.90968 1.41107 1.29816 1.83242 0.90056 0.92847 0.94054 0.88724 0.94061 0.92569 0.95208 0.88725 0.83460 0.82105 0.88727 0.85486 0.83895 0.83191 0.85881 0.91821 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.80 71.98 0.71 -1.02 16 2 C -0.14 -2.33 5.38 30.59 0.16 -2.17 16 3 C 0.18 2.81 2.97 44.99 0.13 2.94 16 4 H 0.14 0.92 8.12 -2.39 -0.02 0.90 16 5 C -0.17 -3.62 9.23 71.98 0.66 -2.96 16 6 N -0.61 -12.06 2.34 -817.73 -1.91 -13.97 16 7 C 0.07 0.90 7.65 85.76 0.66 1.55 16 8 C 0.52 11.50 8.31 87.94 0.73 12.23 16 9 O -0.49 -12.79 17.75 -2.88 -0.05 -12.84 16 10 N -0.58 -15.86 2.59 -777.23 -2.01 -17.87 16 11 C 0.17 4.94 5.82 85.63 0.50 5.44 16 12 C -0.07 -2.63 5.46 -19.88 -0.11 -2.74 16 13 C -0.17 -5.62 9.70 22.30 0.22 -5.41 16 14 C -0.07 -2.52 10.04 22.25 0.22 -2.30 16 15 C -0.23 -10.49 9.17 22.39 0.21 -10.29 16 16 C 0.11 5.91 6.65 22.58 0.15 6.06 16 17 O -0.23 -14.83 9.76 -22.80 -0.22 -15.05 16 18 C -0.42 -25.02 9.49 67.92 0.64 -24.38 16 19 H 0.10 5.64 5.20 -2.91 -0.02 5.63 16 20 C -0.02 -1.41 5.49 84.83 0.47 -0.95 16 21 N -0.92 -58.50 13.67 21.61 0.30 -58.21 16 22 Si 1.02 43.86 29.55 68.60 2.03 45.89 16 23 H -0.25 -9.80 7.11 99.48 0.71 -9.10 16 24 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 25 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 26 C -0.18 -8.32 9.64 22.39 0.22 -8.11 16 27 C 0.69 20.53 7.77 179.44 1.39 21.92 16 28 O -0.58 -22.62 14.83 -3.85 -0.06 -22.68 16 29 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.04 0.59 7.75 -2.39 -0.02 0.57 16 32 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.04 1.04 6.81 -2.39 -0.02 1.02 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.03 0.91 6.96 -2.39 -0.02 0.90 16 36 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.15 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.16 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.09 2.90 7.80 -2.39 -0.02 2.88 16 40 H 0.13 3.00 7.94 -2.39 -0.02 2.98 16 41 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 42 H 0.15 4.15 8.06 -2.92 -0.02 4.12 16 43 H 0.12 5.57 5.64 -2.91 -0.02 5.55 16 44 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 45 H 0.10 5.00 8.06 -2.91 -0.02 4.98 16 Total: -1.00 -85.14 380.09 6.04 -79.10 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 1.00 Total: 25.79 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 6.96 Total: -10.18 kcal Atomic # 7 Polarization: -86.42 SS G_CDS: -3.63 Total: -90.04 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: -0.33 Total: -50.56 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -85.14 6.04 -79.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328257944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.374 kcal (2) G-P(sol) polarization free energy of solvation -85.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds