Wall clock time and date at job start Tue Mar 31 2020 16:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47222 * 2 1 4 4 C 1.50698 * 109.47275 * 239.99786 * 2 1 3 5 5 H 1.07997 * 120.00442 * 240.00137 * 4 2 1 6 6 C 1.37884 * 119.99873 * 60.00089 * 4 2 1 7 7 N 1.31512 * 119.99813 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00073 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47133 * 59.99956 * 8 6 4 10 10 H 1.48496 * 109.47162 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47077 * 300.00085 * 8 6 4 12 12 C 1.53001 * 109.47336 * 119.99895 * 2 1 3 13 13 N 1.46501 * 109.47117 * 300.00505 * 12 2 1 14 14 C 1.34773 * 120.00140 * 180.02562 * 13 12 2 15 15 O 1.21350 * 120.00051 * 359.97438 * 14 13 12 16 16 C 1.49457 * 120.00105 * 179.97438 * 14 13 12 17 17 O 1.21350 * 119.99845 * 359.97438 * 16 14 13 18 18 N 1.34771 * 119.99875 * 179.97438 * 16 14 13 19 19 C 1.46638 * 126.57355 * 359.97438 * 18 16 14 20 20 C 1.50794 * 107.75776 * 180.02562 * 19 18 16 21 21 C 1.38377 * 131.26662 * 179.97438 * 20 19 18 22 22 C 1.38175 * 120.26055 * 180.02562 * 21 20 19 23 23 C 1.38166 * 120.02414 * 0.04815 * 22 21 20 24 24 C 1.38645 * 119.89731 * 359.97438 * 23 22 21 25 25 O 1.35904 * 120.00803 * 179.97438 * 24 23 22 26 26 C 1.38117 * 108.78256 * 0.05789 * 20 19 18 27 27 C 1.46640 * 126.57034 * 180.02562 * 18 16 14 28 28 H 1.08999 * 109.46995 * 300.00095 * 1 2 3 29 29 H 1.08997 * 109.47367 * 59.99948 * 1 2 3 30 30 H 1.09002 * 109.47329 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47338 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46992 * 300.00281 * 3 2 1 33 33 H 1.08999 * 109.47213 * 60.00038 * 3 2 1 34 34 H 0.97003 * 119.99836 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47125 * 180.02562 * 12 2 1 36 36 H 1.09002 * 109.47081 * 59.99640 * 12 2 1 37 37 H 0.97008 * 119.99773 * 359.97438 * 13 12 2 38 38 H 1.09002 * 109.81272 * 299.58278 * 19 18 16 39 39 H 1.09004 * 109.81012 * 60.42022 * 19 18 16 40 40 H 1.07997 * 119.85217 * 0.08878 * 21 20 19 41 41 H 1.07998 * 119.98846 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.05237 * 180.02562 * 23 22 21 43 43 H 0.96698 * 114.00098 * 270.03343 * 25 24 23 44 44 H 1.09003 * 109.81065 * 299.50592 * 27 18 16 45 45 H 1.08992 * 109.81454 * 60.34804 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8258 -2.5203 -4.0077 10 1 1.8259 -0.4206 -5.2204 11 1 3.8063 -1.1210 -4.0081 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4908 3.6695 15 8 2.5754 -1.4773 3.7809 16 6 1.3798 0.2141 4.8898 17 8 0.6825 1.2009 4.7784 18 7 1.7055 -0.2464 6.1139 19 6 2.5333 -1.4188 6.4147 20 6 2.6230 -1.5459 7.9145 21 6 3.2736 -2.4682 8.7151 22 6 3.2025 -2.3684 10.0914 23 6 2.4790 -1.3456 10.6740 24 6 1.8253 -0.4197 9.8755 25 8 1.1126 0.5869 10.4461 26 6 1.8980 -0.5217 8.4918 27 6 1.2989 0.3284 7.4002 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.7087 1.1612 -3.4844 35 1 3.1300 -0.7208 1.2494 36 1 1.6767 -1.7489 1.2493 37 1 0.9941 0.7582 2.3564 38 1 2.0731 -2.3134 5.9953 39 1 3.5302 -1.2846 5.9946 40 1 3.8400 -3.2684 8.2620 41 1 3.7124 -3.0904 10.7120 42 1 2.4235 -1.2670 11.7497 43 1 0.1852 0.3680 10.6108 44 1 1.6694 1.3503 7.4818 45 1 0.2120 0.3220 7.4807 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333047786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:46 Heat of formation + Delta-G solvation = -71.542059 kcal Electronic energy + Delta-G solvation = -27973.712603 eV Core-core repulsion = 23956.893962 eV Total energy + Delta-G solvation = -4016.818641 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.27103 -40.06113 -38.45192 -37.60595 -36.55318 -36.07380 -33.39727 -31.51390 -30.91838 -30.87592 -28.02895 -26.81868 -25.73709 -25.66599 -25.08005 -22.88028 -21.99645 -21.72170 -19.86974 -18.90371 -18.45175 -17.89473 -16.91295 -16.63410 -16.31313 -15.97540 -15.62959 -15.59646 -15.05256 -14.88140 -14.77508 -14.43568 -13.71833 -13.65883 -13.27093 -13.21140 -13.08315 -12.92032 -12.69529 -12.43854 -12.33125 -12.23878 -11.72449 -11.42150 -11.41343 -11.19226 -10.97115 -10.87617 -10.75247 -10.41283 -10.21586 -9.66926 -9.58346 -9.57860 -9.27454 -8.99901 -8.82812 -8.72305 -8.57171 -8.38185 -6.03735 -4.14726 0.78483 0.80881 1.56638 2.23876 3.12415 3.28810 3.33676 3.36264 3.38032 3.56821 3.78177 3.90850 4.11549 4.37499 4.61048 4.70175 4.84449 4.99657 5.11921 5.17687 5.22795 5.31894 5.39315 5.44805 5.55858 5.77374 5.88839 5.96297 6.08138 6.09679 6.20916 6.32758 6.44759 6.58955 6.80023 6.83615 6.91852 6.98744 7.00226 7.22433 7.30868 7.49330 7.53582 7.67365 7.89169 7.98664 8.10436 8.28206 8.38063 8.85174 9.51127 10.97628 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030931 B = 0.002199 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.010025 B =12728.607163 C =13429.331655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.056 3.944 3 C -0.134 4.134 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.129 3.871 13 N -0.678 5.678 14 C 0.501 3.499 15 O -0.530 6.530 16 C 0.530 3.470 17 O -0.513 6.513 18 N -0.595 5.595 19 C 0.151 3.849 20 C -0.086 4.086 21 C -0.103 4.103 22 C -0.097 4.097 23 C -0.143 4.143 24 C 0.131 3.869 25 O -0.497 6.497 26 C -0.135 4.135 27 C 0.158 3.842 28 H 0.008 0.992 29 H 0.087 0.913 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.087 0.913 33 H 0.008 0.992 34 H 0.261 0.739 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.411 0.589 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.392 0.608 44 H 0.089 0.911 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.994 -4.277 25.027 25.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.055 3.945 3 C -0.192 4.192 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.007 3.993 13 N -0.330 5.330 14 C 0.280 3.720 15 O -0.408 6.408 16 C 0.314 3.686 17 O -0.388 6.388 18 N -0.330 5.330 19 C 0.029 3.971 20 C -0.086 4.086 21 C -0.121 4.121 22 C -0.115 4.115 23 C -0.162 4.162 24 C 0.086 3.914 25 O -0.307 6.307 26 C -0.136 4.136 27 C 0.035 3.965 28 H 0.027 0.973 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.106 0.894 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.249 0.751 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.248 0.752 44 H 0.107 0.893 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.516 -3.962 24.695 25.056 hybrid contribution -0.368 -0.319 -0.713 0.863 sum 1.148 -4.281 23.982 24.388 Atomic orbital electron populations 1.21860 0.97581 0.99294 1.00418 1.18383 0.92989 0.92876 0.90234 1.21861 0.98644 0.98247 1.00420 1.20897 1.31793 1.12207 0.89751 0.92398 1.24887 0.94818 0.94918 0.98883 1.69796 1.36364 1.22638 1.23431 0.86609 0.79204 0.79752 0.82136 1.20280 1.21325 1.20272 1.21965 0.98578 0.96032 0.82696 1.46214 1.50406 1.31419 1.04967 1.19696 0.82498 0.85220 0.84599 1.90712 1.37755 1.25814 1.86481 1.20151 0.81018 0.84531 0.82900 1.90779 1.36808 1.25407 1.85786 1.47618 1.51031 1.29603 1.04739 1.20467 0.97158 0.89259 0.90246 1.20414 0.97448 0.95370 0.95407 1.20521 0.99698 0.98873 0.93027 1.20987 0.98346 0.97821 0.94359 1.21339 0.99968 0.94539 1.00334 1.17818 0.96555 0.88981 0.88022 1.84832 1.26367 1.37399 1.82103 1.20625 1.01587 0.97966 0.93466 1.20106 0.99911 0.96852 0.79582 0.97276 0.89412 0.95331 0.95318 0.89421 0.97262 0.92861 0.91917 0.91916 0.75138 0.88477 0.88464 0.85014 0.84842 0.84799 0.75188 0.89332 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 4 C -0.51 -13.05 8.01 -34.44 -0.28 -13.32 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -23.46 9.35 55.43 0.52 -22.95 16 8 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 C 0.13 2.65 4.50 -4.04 -0.02 2.63 16 13 N -0.68 -12.49 4.95 -60.73 -0.30 -12.79 16 14 C 0.50 8.74 7.86 -11.58 -0.09 8.65 16 15 O -0.53 -9.71 14.25 5.50 0.08 -9.63 16 16 C 0.53 8.51 7.93 -11.58 -0.09 8.42 16 17 O -0.51 -9.16 16.85 5.50 0.09 -9.07 16 18 N -0.59 -7.98 3.34 -176.62 -0.59 -8.57 16 19 C 0.15 1.76 5.51 -5.07 -0.03 1.73 16 20 C -0.09 -0.85 6.22 -104.57 -0.65 -1.50 16 21 C -0.10 -0.81 10.03 -39.55 -0.40 -1.21 16 22 C -0.10 -0.65 10.04 -39.63 -0.40 -1.05 16 23 C -0.14 -1.04 9.99 -39.46 -0.39 -1.43 16 24 C 0.13 1.15 6.71 -39.17 -0.26 0.89 16 25 O -0.50 -3.84 13.47 -19.44 -0.26 -4.10 16 26 C -0.14 -1.37 6.18 -104.37 -0.65 -2.02 16 27 C 0.16 1.78 6.87 -5.08 -0.03 1.75 16 28 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 29 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 33 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 34 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.41 7.49 5.64 -40.82 -0.23 7.26 16 38 H 0.10 1.14 7.68 -51.93 -0.40 0.74 16 39 H 0.10 1.17 7.68 -51.93 -0.40 0.77 16 40 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 42 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.39 1.20 9.06 45.56 0.41 1.61 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 369.75 15.07 5.57 5.57 Total: -1.00 -29.82 369.75 -8.07 -37.89 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.30 Total: 7.28 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -2.86 Total: 0.90 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: -0.37 Total: -44.31 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.09 Total: -22.80 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.82 -8.07 -37.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333047786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.648 kcal (2) G-P(sol) polarization free energy of solvation -29.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds