Wall clock time and date at job start Tue Mar 31 2020 16:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47222 * 2 1 4 4 C 1.50698 * 109.47275 * 239.99786 * 2 1 3 5 5 H 1.07997 * 120.00442 * 240.00137 * 4 2 1 6 6 C 1.37884 * 119.99873 * 60.00089 * 4 2 1 7 7 N 1.31512 * 119.99813 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00073 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47133 * 59.99956 * 8 6 4 10 10 H 1.48496 * 109.47162 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47077 * 300.00085 * 8 6 4 12 12 C 1.53001 * 109.47336 * 119.99895 * 2 1 3 13 13 N 1.46501 * 109.47117 * 300.00505 * 12 2 1 14 14 C 1.34773 * 120.00140 * 180.02562 * 13 12 2 15 15 O 1.21350 * 120.00051 * 359.97438 * 14 13 12 16 16 C 1.49457 * 120.00105 * 179.97438 * 14 13 12 17 17 O 1.21350 * 119.99845 * 359.97438 * 16 14 13 18 18 N 1.34771 * 119.99875 * 179.97438 * 16 14 13 19 19 C 1.46638 * 126.57355 * 359.97438 * 18 16 14 20 20 C 1.50794 * 107.75776 * 180.02562 * 19 18 16 21 21 C 1.38377 * 131.26662 * 179.97438 * 20 19 18 22 22 C 1.38175 * 120.26055 * 180.02562 * 21 20 19 23 23 C 1.38166 * 120.02414 * 0.04815 * 22 21 20 24 24 C 1.38645 * 119.89731 * 359.97438 * 23 22 21 25 25 O 1.35904 * 120.00803 * 179.97438 * 24 23 22 26 26 C 1.38117 * 108.78256 * 0.05789 * 20 19 18 27 27 C 1.46640 * 126.57034 * 180.02562 * 18 16 14 28 28 H 1.08999 * 109.46995 * 300.00095 * 1 2 3 29 29 H 1.08997 * 109.47367 * 59.99948 * 1 2 3 30 30 H 1.09002 * 109.47329 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47338 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46992 * 300.00281 * 3 2 1 33 33 H 1.08999 * 109.47213 * 60.00038 * 3 2 1 34 34 H 0.97003 * 119.99836 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47125 * 180.02562 * 12 2 1 36 36 H 1.09002 * 109.47081 * 59.99640 * 12 2 1 37 37 H 0.97008 * 119.99773 * 359.97438 * 13 12 2 38 38 H 1.09002 * 109.81272 * 299.58278 * 19 18 16 39 39 H 1.09004 * 109.81012 * 60.42022 * 19 18 16 40 40 H 1.07997 * 119.85217 * 0.08878 * 21 20 19 41 41 H 1.07998 * 119.98846 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.05237 * 180.02562 * 23 22 21 43 43 H 0.96698 * 114.00098 * 270.03343 * 25 24 23 44 44 H 1.09003 * 109.81065 * 299.50592 * 27 18 16 45 45 H 1.08992 * 109.81454 * 60.34804 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8258 -2.5203 -4.0077 10 1 1.8259 -0.4206 -5.2204 11 1 3.8063 -1.1210 -4.0081 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4908 3.6695 15 8 2.5754 -1.4773 3.7809 16 6 1.3798 0.2141 4.8898 17 8 0.6825 1.2009 4.7784 18 7 1.7055 -0.2464 6.1139 19 6 2.5333 -1.4188 6.4147 20 6 2.6230 -1.5459 7.9145 21 6 3.2736 -2.4682 8.7151 22 6 3.2025 -2.3684 10.0914 23 6 2.4790 -1.3456 10.6740 24 6 1.8253 -0.4197 9.8755 25 8 1.1126 0.5869 10.4461 26 6 1.8980 -0.5217 8.4918 27 6 1.2989 0.3284 7.4002 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.7087 1.1612 -3.4844 35 1 3.1300 -0.7208 1.2494 36 1 1.6767 -1.7489 1.2493 37 1 0.9941 0.7582 2.3564 38 1 2.0731 -2.3134 5.9953 39 1 3.5302 -1.2846 5.9946 40 1 3.8400 -3.2684 8.2620 41 1 3.7124 -3.0904 10.7120 42 1 2.4235 -1.2670 11.7497 43 1 0.1852 0.3680 10.6108 44 1 1.6694 1.3503 7.4818 45 1 0.2120 0.3220 7.4807 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333047786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:45 Heat of formation + Delta-G solvation = -91.358058 kcal Electronic energy + Delta-G solvation = -27974.571889 eV Core-core repulsion = 23956.893962 eV Total energy + Delta-G solvation = -4017.677927 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.26052 -41.13690 -39.71570 -38.48005 -38.16254 -36.92402 -35.07745 -32.77164 -32.38220 -31.58335 -28.83908 -28.12328 -27.59412 -27.33636 -26.59723 -24.10659 -22.67930 -22.50980 -21.20412 -20.65465 -19.19688 -19.08962 -18.14546 -17.75679 -17.70483 -16.96891 -16.78123 -16.66138 -16.39309 -16.17703 -16.02066 -15.50820 -15.06255 -14.91268 -14.77049 -14.38539 -14.06467 -14.02195 -13.95558 -13.93466 -13.21348 -13.12084 -13.07449 -13.02492 -12.77178 -12.68408 -12.62107 -12.29045 -12.27737 -12.12293 -11.58429 -11.51142 -11.30592 -10.81348 -10.68645 -10.48326 -10.40343 -10.15066 -9.59748 -9.49843 -8.01103 -6.17690 0.16668 0.20085 0.22751 1.03365 1.46545 1.47695 1.54120 2.01864 2.32042 2.48963 2.54385 3.06056 3.21183 3.22783 3.34326 3.35954 4.07251 4.19016 4.28524 4.33355 4.39999 4.43206 4.44641 4.47193 4.53236 4.67180 4.79565 4.85144 4.85582 4.91739 5.03338 5.04970 5.16676 5.19199 5.31849 5.37190 5.44467 5.47283 5.64179 5.67585 5.80032 5.84673 6.10645 6.13486 6.18750 6.40643 6.53925 6.81021 6.83598 6.90032 7.50204 8.97995 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030931 B = 0.002199 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.010025 B =12728.607163 C =13429.331655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.050 3.950 3 C -0.125 4.125 4 C -0.525 4.525 5 H 0.053 0.947 6 C 0.025 3.975 7 N -0.901 5.901 8 Si 0.949 3.051 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.145 3.855 13 N -0.680 5.680 14 C 0.504 3.496 15 O -0.538 6.538 16 C 0.533 3.467 17 O -0.536 6.536 18 N -0.589 5.589 19 C 0.151 3.849 20 C -0.099 4.099 21 C -0.106 4.106 22 C -0.089 4.089 23 C -0.142 4.142 24 C 0.128 3.872 25 O -0.508 6.508 26 C -0.153 4.153 27 C 0.157 3.843 28 H 0.029 0.971 29 H 0.063 0.937 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.063 0.937 33 H 0.029 0.971 34 H 0.260 0.740 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.413 0.587 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.149 0.851 41 H 0.166 0.834 42 H 0.157 0.843 43 H 0.411 0.589 44 H 0.083 0.917 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.541 -5.332 27.399 27.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.049 3.951 3 C -0.182 4.182 4 C -0.564 4.564 5 H 0.071 0.929 6 C -0.174 4.174 7 N -0.540 5.540 8 Si 0.775 3.225 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.022 3.978 13 N -0.332 5.332 14 C 0.284 3.716 15 O -0.416 6.416 16 C 0.316 3.684 17 O -0.413 6.413 18 N -0.323 5.323 19 C 0.029 3.971 20 C -0.100 4.100 21 C -0.124 4.124 22 C -0.106 4.106 23 C -0.160 4.160 24 C 0.083 3.917 25 O -0.321 6.321 26 C -0.154 4.154 27 C 0.035 3.965 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.251 0.749 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.167 0.833 41 H 0.183 0.817 42 H 0.175 0.825 43 H 0.270 0.730 44 H 0.101 0.899 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.062 -5.037 27.111 27.651 hybrid contribution -0.524 -0.022 -1.307 1.408 sum 1.538 -5.058 25.804 26.340 Atomic orbital electron populations 1.21711 0.97370 0.98944 1.00185 1.18388 0.93147 0.92984 0.90566 1.21714 0.98255 0.98092 1.00179 1.21202 1.31821 1.12306 0.91058 0.92901 1.25512 0.95140 0.95591 1.01205 1.69922 1.36958 1.23418 1.23690 0.85759 0.78645 0.78767 0.79284 1.20050 1.21226 1.20075 1.21578 0.98025 0.95526 0.82637 1.46053 1.50789 1.31503 1.04806 1.19914 0.81967 0.84965 0.84765 1.90705 1.37999 1.26196 1.86716 1.19715 0.81164 0.84299 0.83206 1.90767 1.38086 1.26309 1.86126 1.47643 1.50144 1.29780 1.04707 1.20489 0.96346 0.88292 0.92019 1.20334 0.98970 0.96556 0.94146 1.20805 0.99298 0.98703 0.93610 1.21380 0.97346 0.97873 0.94026 1.21662 0.99026 0.93901 1.01413 1.17965 0.96870 0.89358 0.87556 1.84781 1.27924 1.37575 1.81848 1.20587 1.02682 0.98246 0.93882 1.20190 1.00454 0.96820 0.79025 0.95243 0.91801 0.95667 0.95715 0.91799 0.95254 0.93065 0.92507 0.92427 0.74932 0.88833 0.89143 0.83327 0.81684 0.82546 0.72957 0.89927 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.08 71.98 0.58 -5.07 16 2 C 0.05 2.30 0.50 -52.93 -0.03 2.27 16 3 C -0.12 -5.68 8.08 71.98 0.58 -5.10 16 4 C -0.53 -27.13 8.01 25.60 0.21 -26.93 16 5 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 6 C 0.03 1.32 5.15 84.66 0.44 1.76 16 7 N -0.90 -48.33 9.35 21.45 0.20 -48.13 16 8 Si 0.95 42.08 29.54 68.60 2.03 44.11 16 9 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 10 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 12 C 0.14 5.94 4.50 86.38 0.39 6.33 16 13 N -0.68 -24.82 4.95 -464.40 -2.30 -27.11 16 14 C 0.50 17.50 7.86 87.27 0.69 18.18 16 15 O -0.54 -19.61 14.25 -3.25 -0.05 -19.65 16 16 C 0.53 17.06 7.93 87.27 0.69 17.75 16 17 O -0.54 -19.09 16.85 -3.25 -0.05 -19.15 16 18 N -0.59 -15.72 3.34 -831.06 -2.77 -18.49 16 19 C 0.15 3.46 5.51 85.64 0.47 3.93 16 20 C -0.10 -1.86 6.22 -19.83 -0.12 -1.98 16 21 C -0.11 -1.41 10.03 22.29 0.22 -1.19 16 22 C -0.09 -0.87 10.04 22.24 0.22 -0.65 16 23 C -0.14 -1.60 9.99 22.35 0.22 -1.37 16 24 C 0.13 1.98 6.71 22.53 0.15 2.13 16 25 O -0.51 -6.91 13.47 -92.46 -1.25 -8.16 16 26 C -0.15 -2.92 6.18 -19.70 -0.12 -3.04 16 27 C 0.16 3.49 6.87 85.63 0.59 4.08 16 28 H 0.03 1.17 6.86 -2.39 -0.02 1.16 16 29 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 30 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 33 H 0.03 1.17 6.86 -2.39 -0.02 1.16 16 34 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 35 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.41 14.84 5.64 -92.70 -0.52 14.32 16 38 H 0.09 2.19 7.68 -2.39 -0.02 2.17 16 39 H 0.09 2.17 7.68 -2.38 -0.02 2.16 16 40 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 41 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 42 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 43 H 0.41 1.74 9.06 -74.06 -0.67 1.07 16 44 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -63.35 369.75 0.84 -62.51 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -0.15 Total: 22.97 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 5.18 Total: 11.10 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -4.87 Total: -93.74 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -1.35 Total: -46.95 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -63.35 0.84 -62.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333047786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.845 kcal (2) G-P(sol) polarization free energy of solvation -63.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds