Wall clock time and date at job start Tue Mar 31 2020 17:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 120.00095 * 2 1 4 4 N 1.46495 * 109.47156 * 124.99877 * 3 2 1 5 5 C 1.34780 * 119.99910 * 82.00377 * 4 3 2 6 6 O 1.21371 * 119.99879 * 181.44868 * 5 4 3 7 7 C 1.49318 * 120.00015 * 1.45291 * 5 4 3 8 8 O 1.21391 * 119.99825 * 354.44080 * 7 5 4 9 9 N 1.34783 * 120.00027 * 174.44130 * 7 5 4 10 10 C 1.39735 * 119.99857 * 173.75508 * 9 7 5 11 11 C 1.38999 * 120.00909 * 323.62432 * 10 9 7 12 12 C 1.37972 * 119.99012 * 180.02562 * 11 10 9 13 13 C 1.38932 * 120.01076 * 0.02562 * 12 11 10 14 14 O 1.35755 * 119.99304 * 179.97438 * 13 12 11 15 15 C 1.34805 * 117.00049 * 1.84852 * 14 13 12 16 16 H 1.07998 * 119.99696 * 355.56814 * 15 14 13 17 17 C 1.38654 * 119.99696 * 175.57161 * 15 14 13 18 18 N 1.31554 * 120.00165 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99455 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47320 * 60.00012 * 19 17 15 21 21 H 1.48507 * 109.47008 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.47392 * 299.99512 * 19 17 15 23 23 C 1.38938 * 120.01201 * 0.24488 * 13 12 11 24 24 C 1.37966 * 120.00576 * 359.49915 * 23 13 12 25 25 C 1.46493 * 120.00254 * 262.00304 * 4 3 2 26 26 C 1.53000 * 109.47395 * 301.99019 * 25 4 3 27 27 C 1.53000 * 109.47113 * 61.99111 * 25 4 3 28 28 H 1.07996 * 119.99948 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00032 * 180.02562 * 1 2 3 30 30 H 1.08008 * 119.99645 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47251 * 5.00015 * 3 2 1 32 32 H 1.09001 * 109.46886 * 244.99899 * 3 2 1 33 33 H 0.97000 * 119.99530 * 353.75562 * 9 7 5 34 34 H 1.07995 * 120.00527 * 359.97438 * 11 10 9 35 35 H 1.07999 * 119.99193 * 179.97438 * 12 11 10 36 36 H 0.97004 * 119.99805 * 180.02562 * 18 17 15 37 37 H 1.08001 * 119.99202 * 179.72426 * 23 13 12 38 38 H 1.08008 * 120.00384 * 180.22485 * 24 23 13 39 39 H 1.09003 * 109.47758 * 181.99130 * 25 4 3 40 40 H 1.09004 * 109.46820 * 59.99878 * 26 25 4 41 41 H 1.08998 * 109.47231 * 179.97438 * 26 25 4 42 42 H 1.09000 * 109.47193 * 299.99839 * 26 25 4 43 43 H 1.08998 * 109.46841 * 60.00145 * 27 25 4 44 44 H 1.08998 * 109.47388 * 179.97438 * 27 25 4 45 45 H 1.08995 * 109.47262 * 300.00155 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.1920 0.7226 1.0332 6 8 4.9519 0.7222 1.9796 7 6 4.5846 0.0483 -0.2398 8 8 3.7874 -0.0394 -1.1511 9 7 5.8241 -0.4631 -0.3772 10 6 6.1509 -1.2071 -1.5139 11 6 5.2056 -2.0476 -2.0901 12 6 5.5289 -2.7825 -3.2122 13 6 6.7992 -2.6828 -3.7659 14 8 7.1171 -3.4064 -4.8697 15 6 6.1432 -4.1723 -5.4008 16 1 5.1851 -4.2463 -4.9078 17 6 6.3715 -4.8650 -6.5800 18 7 7.5383 -4.7745 -7.1807 19 14 5.0221 -5.9269 -7.3155 20 1 3.8381 -5.0833 -7.6185 21 1 5.5143 -6.5560 -8.5674 22 1 4.6409 -6.9851 -6.3458 23 6 7.7461 -1.8470 -3.1869 24 6 7.4218 -1.1079 -2.0680 25 6 2.6216 2.0208 2.3695 26 6 2.3109 3.4873 2.0636 27 6 1.3846 1.3526 2.9730 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3587 2.1316 0.0896 32 1 2.6213 1.4025 -0.9314 33 1 6.4892 -0.3146 0.3131 34 1 4.2185 -2.1261 -1.6591 35 1 4.7946 -3.4359 -3.6597 36 1 7.6979 -5.2589 -8.0059 37 1 8.7349 -1.7732 -3.6150 38 1 8.1568 -0.4554 -1.6200 39 1 3.4473 1.9647 3.0789 40 1 1.4852 3.5434 1.3542 41 1 2.0336 3.9998 2.9847 42 1 3.1922 3.9634 1.6337 43 1 1.6060 0.3078 3.1910 44 1 1.1080 1.8649 3.8944 45 1 0.5589 1.4086 2.2637 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343280309.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:13 Heat of formation + Delta-G solvation = -29.787840 kcal Electronic energy + Delta-G solvation = -28125.540583 eV Core-core repulsion = 24110.532541 eV Total energy + Delta-G solvation = -4015.008042 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.15227 -39.49620 -38.49280 -37.34770 -36.56519 -34.22383 -33.94785 -32.23777 -31.95222 -30.29496 -28.35483 -27.60974 -26.53832 -25.60467 -24.77600 -22.49447 -21.73587 -20.72439 -20.41104 -19.37232 -18.32652 -17.87311 -17.39964 -17.15720 -16.35717 -16.02420 -15.75633 -14.87970 -14.64799 -14.53542 -14.48171 -14.21268 -14.02794 -13.71382 -13.59536 -13.53632 -13.25807 -12.95106 -12.67766 -12.64217 -12.54139 -12.26178 -11.85789 -11.74179 -11.67028 -11.59455 -11.46418 -11.31891 -11.08984 -11.03811 -10.80780 -10.49159 -9.75001 -9.65008 -9.43256 -9.22515 -9.03632 -8.75124 -8.28287 -7.02066 -6.49348 -4.06652 1.25655 1.91579 2.12192 2.23865 2.42575 3.11367 3.12482 3.15810 3.21423 3.46954 3.94076 4.28665 4.49537 4.53246 4.64024 4.76478 4.87279 4.89252 5.05835 5.19012 5.19778 5.21064 5.29975 5.41725 5.54120 5.56919 5.60758 5.63706 5.75915 5.81703 5.87538 6.05853 6.07565 6.11066 6.21902 6.47385 6.57618 6.64996 6.71169 6.84225 6.91638 6.99782 7.21792 7.36163 7.37502 7.67185 7.70517 7.95249 8.10328 8.96052 9.64244 10.68182 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018495 B = 0.002573 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.545867 B =10878.681480 C =12069.148951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.124 3.876 4 N -0.576 5.576 5 C 0.511 3.489 6 O -0.525 6.525 7 C 0.494 3.506 8 O -0.499 6.499 9 N -0.626 5.626 10 C 0.025 3.975 11 C -0.057 4.057 12 C -0.221 4.221 13 C 0.150 3.850 14 O -0.172 6.172 15 C -0.392 4.392 16 H 0.093 0.907 17 C 0.040 3.960 18 N -0.860 5.860 19 Si 0.941 3.059 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.269 1.269 23 C -0.178 4.178 24 C -0.084 4.084 25 C 0.127 3.873 26 C -0.162 4.162 27 C -0.161 4.161 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.412 0.588 34 H 0.117 0.883 35 H 0.132 0.868 36 H 0.271 0.729 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.444 13.175 17.347 24.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.163 4.163 3 C 0.002 3.998 4 N -0.309 5.309 5 C 0.294 3.706 6 O -0.401 6.401 7 C 0.276 3.724 8 O -0.375 6.375 9 N -0.271 5.271 10 C -0.067 4.067 11 C -0.077 4.077 12 C -0.240 4.240 13 C 0.095 3.905 14 O -0.075 6.075 15 C -0.468 4.468 16 H 0.110 0.890 17 C -0.164 4.164 18 N -0.494 5.494 19 Si 0.766 3.234 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.194 1.194 23 C -0.198 4.198 24 C -0.104 4.104 25 C 0.025 3.975 26 C -0.220 4.220 27 C -0.219 4.219 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.098 0.902 32 H 0.137 0.863 33 H 0.249 0.751 34 H 0.135 0.865 35 H 0.149 0.851 36 H 0.081 0.919 37 H 0.141 0.859 38 H 0.135 0.865 39 H 0.121 0.879 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.290 12.999 16.874 24.108 hybrid contribution -0.511 -0.524 -0.073 0.736 sum -11.801 12.474 16.802 24.025 Atomic orbital electron populations 1.23775 0.95671 1.01727 1.01919 1.23201 0.95794 0.98890 0.98415 1.21185 0.92643 0.95638 0.90310 1.47911 1.15380 1.52003 1.15599 1.20241 0.82247 0.79694 0.88464 1.90740 1.51185 1.58916 1.39299 1.20013 0.83670 0.80812 0.87929 1.90752 1.49914 1.56004 1.40781 1.42900 1.12547 1.50167 1.21514 1.17181 0.96026 1.00586 0.92876 1.20615 0.98038 0.93501 0.95508 1.21049 0.97840 1.05734 0.99422 1.19424 0.92363 0.90518 0.88147 1.83971 1.38271 1.50262 1.34988 1.21310 0.94196 1.24277 1.07055 0.88961 1.25299 0.97882 0.97792 0.95464 1.70026 1.21777 1.40043 1.17603 0.85775 0.79600 0.79488 0.78574 1.19402 1.20238 1.19436 1.19999 0.99748 1.01428 0.98599 1.20394 0.94918 0.99482 0.95598 1.21220 0.98891 0.91559 0.85829 1.22165 1.02333 0.94956 1.02534 1.22166 0.97430 1.01256 1.01011 0.88763 0.88406 0.87212 0.90186 0.86329 0.75127 0.86546 0.85056 0.91866 0.85861 0.86476 0.87872 0.92013 0.91034 0.92013 0.92165 0.91381 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.68 13.64 29.01 0.40 -1.28 16 2 C -0.14 -1.51 8.06 -36.03 -0.29 -1.80 16 3 C 0.12 1.22 4.69 -5.20 -0.02 1.20 16 4 N -0.58 -6.03 2.38 -168.04 -0.40 -6.43 16 5 C 0.51 6.62 7.66 -11.65 -0.09 6.53 16 6 O -0.53 -7.57 15.84 5.48 0.09 -7.48 16 7 C 0.49 7.14 7.43 -11.64 -0.09 7.05 16 8 O -0.50 -7.94 9.82 5.46 0.05 -7.89 16 9 N -0.63 -9.11 5.30 -10.27 -0.05 -9.16 16 10 C 0.03 0.44 6.21 -83.69 -0.52 -0.08 16 11 C -0.06 -1.09 8.64 -39.40 -0.34 -1.43 16 12 C -0.22 -4.80 9.16 -39.42 -0.36 -5.16 16 13 C 0.15 3.55 6.66 -39.07 -0.26 3.29 16 14 O -0.17 -4.82 9.75 0.11 0.00 -4.82 16 15 C -0.39 -10.81 9.48 30.89 0.29 -10.52 16 16 H 0.09 2.35 5.18 -52.49 -0.27 2.08 16 17 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 18 N -0.86 -24.88 13.67 55.48 0.76 -24.12 16 19 Si 0.94 20.31 29.55 -169.99 -5.02 15.29 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 C -0.18 -3.62 9.98 -39.42 -0.39 -4.01 16 24 C -0.08 -1.45 9.96 -39.40 -0.39 -1.84 16 25 C 0.13 1.07 3.24 -67.93 -0.22 0.85 16 26 C -0.16 -1.03 9.15 37.16 0.34 -0.69 16 27 C -0.16 -1.14 8.89 37.16 0.33 -0.81 16 28 H 0.09 0.67 7.84 -52.49 -0.41 0.26 16 29 H 0.10 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.11 1.36 7.48 -52.48 -0.39 0.97 16 31 H 0.08 0.61 6.00 -51.93 -0.31 0.30 16 32 H 0.12 1.40 5.65 -51.93 -0.29 1.11 16 33 H 0.41 5.13 8.33 -40.82 -0.34 4.79 16 34 H 0.12 2.14 6.67 -52.49 -0.35 1.79 16 35 H 0.13 2.87 5.61 -52.49 -0.29 2.57 16 36 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 38 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 39 H 0.10 0.99 6.90 -51.93 -0.36 0.63 16 40 H 0.06 0.36 6.60 -51.93 -0.34 0.01 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.43 6.74 -51.93 -0.35 0.08 16 LS Contribution 374.03 15.07 5.64 5.64 Total: -1.00 -31.13 374.03 -6.47 -37.60 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.81 Total: 9.08 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -1.72 Total: -7.70 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.30 Total: -39.71 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: 0.14 Total: -20.19 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.13 -6.47 -37.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343280309.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.810 kcal (2) G-P(sol) polarization free energy of solvation -31.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds