Wall clock time and date at job start Tue Mar 31 2020 17:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 120.00095 * 2 1 4 4 N 1.46495 * 109.47156 * 124.99877 * 3 2 1 5 5 C 1.34780 * 119.99910 * 82.00377 * 4 3 2 6 6 O 1.21371 * 119.99879 * 181.44868 * 5 4 3 7 7 C 1.49318 * 120.00015 * 1.45291 * 5 4 3 8 8 O 1.21391 * 119.99825 * 354.44080 * 7 5 4 9 9 N 1.34783 * 120.00027 * 174.44130 * 7 5 4 10 10 C 1.39735 * 119.99857 * 173.75508 * 9 7 5 11 11 C 1.38999 * 120.00909 * 323.62432 * 10 9 7 12 12 C 1.37972 * 119.99012 * 180.02562 * 11 10 9 13 13 C 1.38932 * 120.01076 * 0.02562 * 12 11 10 14 14 O 1.35755 * 119.99304 * 179.97438 * 13 12 11 15 15 C 1.34805 * 117.00049 * 1.84852 * 14 13 12 16 16 H 1.07998 * 119.99696 * 355.56814 * 15 14 13 17 17 C 1.38654 * 119.99696 * 175.57161 * 15 14 13 18 18 N 1.31554 * 120.00165 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99455 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47320 * 60.00012 * 19 17 15 21 21 H 1.48507 * 109.47008 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.47392 * 299.99512 * 19 17 15 23 23 C 1.38938 * 120.01201 * 0.24488 * 13 12 11 24 24 C 1.37966 * 120.00576 * 359.49915 * 23 13 12 25 25 C 1.46493 * 120.00254 * 262.00304 * 4 3 2 26 26 C 1.53000 * 109.47395 * 301.99019 * 25 4 3 27 27 C 1.53000 * 109.47113 * 61.99111 * 25 4 3 28 28 H 1.07996 * 119.99948 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00032 * 180.02562 * 1 2 3 30 30 H 1.08008 * 119.99645 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47251 * 5.00015 * 3 2 1 32 32 H 1.09001 * 109.46886 * 244.99899 * 3 2 1 33 33 H 0.97000 * 119.99530 * 353.75562 * 9 7 5 34 34 H 1.07995 * 120.00527 * 359.97438 * 11 10 9 35 35 H 1.07999 * 119.99193 * 179.97438 * 12 11 10 36 36 H 0.97004 * 119.99805 * 180.02562 * 18 17 15 37 37 H 1.08001 * 119.99202 * 179.72426 * 23 13 12 38 38 H 1.08008 * 120.00384 * 180.22485 * 24 23 13 39 39 H 1.09003 * 109.47758 * 181.99130 * 25 4 3 40 40 H 1.09004 * 109.46820 * 59.99878 * 26 25 4 41 41 H 1.08998 * 109.47231 * 179.97438 * 26 25 4 42 42 H 1.09000 * 109.47193 * 299.99839 * 26 25 4 43 43 H 1.08998 * 109.46841 * 60.00145 * 27 25 4 44 44 H 1.08998 * 109.47388 * 179.97438 * 27 25 4 45 45 H 1.08995 * 109.47262 * 300.00155 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.1920 0.7226 1.0332 6 8 4.9519 0.7222 1.9796 7 6 4.5846 0.0483 -0.2398 8 8 3.7874 -0.0394 -1.1511 9 7 5.8241 -0.4631 -0.3772 10 6 6.1509 -1.2071 -1.5139 11 6 5.2056 -2.0476 -2.0901 12 6 5.5289 -2.7825 -3.2122 13 6 6.7992 -2.6828 -3.7659 14 8 7.1171 -3.4064 -4.8697 15 6 6.1432 -4.1723 -5.4008 16 1 5.1851 -4.2463 -4.9078 17 6 6.3715 -4.8650 -6.5800 18 7 7.5383 -4.7745 -7.1807 19 14 5.0221 -5.9269 -7.3155 20 1 3.8381 -5.0833 -7.6185 21 1 5.5143 -6.5560 -8.5674 22 1 4.6409 -6.9851 -6.3458 23 6 7.7461 -1.8470 -3.1869 24 6 7.4218 -1.1079 -2.0680 25 6 2.6216 2.0208 2.3695 26 6 2.3109 3.4873 2.0636 27 6 1.3846 1.3526 2.9730 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3587 2.1316 0.0896 32 1 2.6213 1.4025 -0.9314 33 1 6.4892 -0.3146 0.3131 34 1 4.2185 -2.1261 -1.6591 35 1 4.7946 -3.4359 -3.6597 36 1 7.6979 -5.2589 -8.0059 37 1 8.7349 -1.7732 -3.6150 38 1 8.1568 -0.4554 -1.6200 39 1 3.4473 1.9647 3.0789 40 1 1.4852 3.5434 1.3542 41 1 2.0336 3.9998 2.9847 42 1 3.1922 3.9634 1.6337 43 1 1.6060 0.3078 3.1910 44 1 1.1080 1.8649 3.8944 45 1 0.5589 1.4086 2.2637 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343280309.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:12 Heat of formation + Delta-G solvation = -49.178347 kcal Electronic energy + Delta-G solvation = -28126.381419 eV Core-core repulsion = 24110.532541 eV Total energy + Delta-G solvation = -4015.848878 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.27530 -40.93216 -39.93561 -38.40666 -38.01386 -35.49430 -34.82796 -34.17992 -32.75431 -31.92292 -29.90930 -28.14490 -27.51361 -27.27480 -26.03895 -24.02359 -23.14816 -21.71173 -21.44656 -20.45123 -19.86940 -19.25867 -18.74649 -18.41960 -17.72597 -17.08742 -16.88466 -16.32091 -16.15967 -15.69747 -15.55603 -15.49610 -15.22829 -15.14575 -14.94082 -14.67004 -14.31934 -14.19434 -14.03018 -13.60766 -13.41144 -13.28259 -13.22976 -13.02638 -12.94109 -12.70442 -12.57669 -12.48022 -12.38993 -12.15650 -12.06383 -11.75332 -11.38766 -11.13038 -10.66518 -10.56369 -10.18699 -9.93596 -9.86939 -8.69059 -8.47819 -6.14460 0.05549 0.50129 0.70225 1.08259 1.35639 1.45349 1.46730 1.51345 2.04393 2.17625 2.45119 2.79206 3.13309 3.20337 3.48016 3.83600 3.97870 4.02339 4.06065 4.07212 4.20299 4.27976 4.44136 4.47272 4.52874 4.63615 4.66108 4.75103 4.82159 4.91776 4.97132 5.04024 5.05670 5.08145 5.24950 5.25801 5.31310 5.33597 5.38458 5.50477 5.65236 5.71224 5.82499 5.89007 6.00493 6.06004 6.21195 6.64035 6.89107 6.96920 7.74846 8.74588 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018495 B = 0.002573 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.545867 B =10878.681480 C =12069.148951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.169 4.169 3 C 0.127 3.873 4 N -0.565 5.565 5 C 0.512 3.488 6 O -0.543 6.543 7 C 0.496 3.504 8 O -0.511 6.511 9 N -0.623 5.623 10 C 0.054 3.946 11 C -0.064 4.064 12 C -0.226 4.226 13 C 0.113 3.887 14 O -0.223 6.223 15 C -0.415 4.415 16 H 0.101 0.899 17 C -0.019 4.019 18 N -0.917 5.917 19 Si 1.016 2.984 20 H -0.259 1.259 21 H -0.270 1.270 22 H -0.258 1.258 23 C -0.180 4.180 24 C -0.072 4.072 25 C 0.122 3.878 26 C -0.157 4.157 27 C -0.155 4.155 28 H 0.118 0.882 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.426 0.574 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.274 0.726 37 H 0.130 0.870 38 H 0.163 0.837 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.052 0.948 43 H 0.042 0.958 44 H 0.088 0.912 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.803 15.253 19.692 28.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.188 4.188 3 C 0.006 3.994 4 N -0.297 5.297 5 C 0.294 3.706 6 O -0.421 6.421 7 C 0.278 3.722 8 O -0.387 6.387 9 N -0.271 5.271 10 C -0.039 4.039 11 C -0.084 4.084 12 C -0.245 4.245 13 C 0.062 3.938 14 O -0.129 6.129 15 C -0.491 4.491 16 H 0.118 0.882 17 C -0.217 4.217 18 N -0.554 5.554 19 Si 0.835 3.165 20 H -0.183 1.183 21 H -0.195 1.195 22 H -0.182 1.182 23 C -0.199 4.199 24 C -0.091 4.091 25 C 0.020 3.980 26 C -0.214 4.214 27 C -0.213 4.213 28 H 0.137 0.863 29 H 0.119 0.881 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.265 0.735 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.083 0.917 37 H 0.148 0.852 38 H 0.180 0.820 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.107 0.893 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.686 15.130 19.295 28.081 hybrid contribution 0.108 -0.897 -0.451 1.009 sum -13.578 14.234 18.844 27.241 Atomic orbital electron populations 1.23985 0.94974 1.03055 0.98908 1.23055 0.96472 0.98028 1.01257 1.21173 0.92630 0.96466 0.89132 1.48065 1.14417 1.50678 1.16549 1.19891 0.83136 0.80102 0.87449 1.90739 1.51967 1.59955 1.39439 1.20405 0.83098 0.80281 0.88397 1.90771 1.50232 1.56196 1.41486 1.42851 1.13285 1.50002 1.20964 1.17305 0.95500 0.98605 0.92509 1.20706 0.99007 0.93630 0.95014 1.21061 0.97173 1.06084 1.00228 1.19943 0.94028 0.91774 0.88066 1.83940 1.39214 1.52522 1.37270 1.21764 0.94711 1.24883 1.07759 0.88217 1.26537 1.00528 0.99080 0.95593 1.70163 1.24322 1.42336 1.18603 0.84692 0.76349 0.77650 0.77837 1.18320 1.19478 1.18195 1.20296 0.99542 1.00845 0.99245 1.20779 0.95647 0.98636 0.94059 1.21457 0.99069 0.92881 0.84550 1.22141 1.02324 0.93141 1.03816 1.22130 0.96779 1.00300 1.02055 0.86343 0.88097 0.89888 0.87234 0.88328 0.73477 0.85712 0.85996 0.91736 0.85207 0.81968 0.89167 0.90930 0.89035 0.92883 0.93855 0.89285 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 13.64 67.78 0.92 -1.58 16 2 C -0.17 -3.27 8.06 25.64 0.21 -3.06 16 3 C 0.13 2.24 4.69 85.63 0.40 2.64 16 4 N -0.57 -10.77 2.38 -803.90 -1.91 -12.68 16 5 C 0.51 12.53 7.66 87.23 0.67 13.20 16 6 O -0.54 -14.85 15.84 -3.31 -0.05 -14.91 16 7 C 0.50 13.62 7.43 87.23 0.65 14.27 16 8 O -0.51 -15.79 9.82 -3.37 -0.03 -15.82 16 9 N -0.62 -16.83 5.30 -304.74 -1.62 -18.45 16 10 C 0.05 1.79 6.21 38.25 0.24 2.03 16 11 C -0.06 -2.43 8.64 22.39 0.19 -2.23 16 12 C -0.23 -10.12 9.16 22.37 0.20 -9.91 16 13 C 0.11 5.56 6.66 22.60 0.15 5.71 16 14 O -0.22 -13.26 9.75 -22.54 -0.22 -13.48 16 15 C -0.42 -24.10 9.48 67.92 0.64 -23.45 16 16 H 0.10 5.35 5.18 -2.91 -0.02 5.34 16 17 C -0.02 -1.09 5.49 84.83 0.47 -0.62 16 18 N -0.92 -55.76 13.67 21.61 0.30 -55.47 16 19 Si 1.02 42.82 29.55 68.60 2.03 44.85 16 20 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 21 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 C -0.18 -7.31 9.98 22.37 0.22 -7.09 16 24 C -0.07 -2.31 9.96 22.39 0.22 -2.09 16 25 C 0.12 1.74 3.24 44.99 0.15 1.89 16 26 C -0.16 -1.47 9.15 71.98 0.66 -0.82 16 27 C -0.15 -1.75 8.89 71.98 0.64 -1.12 16 28 H 0.12 1.17 7.84 -2.91 -0.02 1.15 16 29 H 0.10 1.42 8.06 -2.91 -0.02 1.40 16 30 H 0.08 2.05 7.48 -2.91 -0.02 2.03 16 31 H 0.11 1.28 6.00 -2.39 -0.01 1.26 16 32 H 0.10 2.19 5.65 -2.39 -0.01 2.18 16 33 H 0.43 9.47 8.33 -92.71 -0.77 8.70 16 34 H 0.13 4.54 6.67 -2.91 -0.02 4.52 16 35 H 0.12 5.59 5.61 -2.91 -0.02 5.57 16 36 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.13 5.05 8.06 -2.91 -0.02 5.02 16 38 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 39 H 0.09 1.57 6.90 -2.39 -0.02 1.55 16 40 H 0.07 0.54 6.60 -2.38 -0.02 0.52 16 41 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.07 0.71 6.74 -2.39 -0.02 0.69 16 Total: -1.00 -72.33 374.03 5.38 -66.94 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.26 Total: 31.25 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: 6.64 Total: -12.23 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -3.23 Total: -86.60 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -0.31 Total: -44.21 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -72.33 5.38 -66.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343280309.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.763 kcal (2) G-P(sol) polarization free energy of solvation -72.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds