Wall clock time and date at job start Tue Mar 31 2020 17:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47265 * 2 1 4 4 H 1.09000 * 115.56714 * 29.30718 * 3 2 1 5 5 C 1.53077 * 117.49262 * 243.59972 * 3 2 1 6 6 C 1.53004 * 117.50171 * 174.99688 * 3 2 1 7 7 H 1.09003 * 117.49379 * 359.97438 * 6 3 2 8 8 C 1.52989 * 117.50199 * 214.97815 * 6 3 2 9 9 N 1.46505 * 109.47359 * 175.08912 * 8 6 3 10 10 C 1.34774 * 120.00128 * 180.02562 * 9 8 6 11 11 O 1.21365 * 120.00030 * 359.97438 * 10 9 8 12 12 C 1.49315 * 119.99953 * 179.97438 * 10 9 8 13 13 O 1.21384 * 120.00161 * 0.02562 * 12 10 9 14 14 N 1.34783 * 120.00105 * 179.97438 * 12 10 9 15 15 C 1.39731 * 120.00043 * 184.24229 * 14 12 10 16 16 C 1.38997 * 120.01218 * 324.62937 * 15 14 12 17 17 C 1.37966 * 119.99754 * 179.76879 * 16 15 14 18 18 C 1.38938 * 120.00589 * 0.48416 * 17 16 15 19 19 O 1.35757 * 119.99341 * 179.76724 * 18 17 16 20 20 C 1.34802 * 116.99803 * 185.36406 * 19 18 17 21 21 H 1.07991 * 120.00046 * 354.96257 * 20 19 18 22 22 C 1.38653 * 119.99757 * 174.96695 * 20 19 18 23 23 N 1.31563 * 119.99976 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00066 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.46807 * 90.00374 * 24 22 20 26 26 H 1.48495 * 109.47327 * 210.00114 * 24 22 20 27 27 H 1.48498 * 109.47110 * 330.00580 * 24 22 20 28 28 C 1.38938 * 120.01269 * 359.78628 * 18 17 16 29 29 C 1.37969 * 120.00547 * 359.96279 * 28 18 17 30 30 H 1.08998 * 109.46485 * 59.99990 * 1 2 3 31 31 H 1.08993 * 109.46892 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47292 * 300.00689 * 1 2 3 33 33 H 1.08999 * 109.47212 * 239.99811 * 2 1 3 34 34 H 1.09001 * 109.46857 * 119.99651 * 2 1 3 35 35 H 1.09003 * 117.51328 * 145.03586 * 5 3 2 36 36 H 1.09003 * 117.51505 * 359.97438 * 5 3 2 37 37 H 1.08999 * 109.47319 * 55.08686 * 8 6 3 38 38 H 1.09006 * 109.47306 * 295.08447 * 8 6 3 39 39 H 0.96997 * 119.99928 * 359.97438 * 9 8 6 40 40 H 0.96997 * 119.99768 * 4.51878 * 14 12 10 41 41 H 1.08007 * 119.99796 * 359.97438 * 16 15 14 42 42 H 1.08000 * 119.99982 * 180.25148 * 17 16 15 43 43 H 0.96997 * 119.99780 * 179.97438 * 23 22 20 44 44 H 1.07999 * 119.99481 * 179.97438 * 28 18 17 45 45 H 1.08001 * 119.99835 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3885 2.1718 0.4813 5 6 2.8449 1.9074 -1.2163 6 6 3.5502 1.6579 0.1184 7 1 4.1803 0.7719 0.1967 8 6 4.0301 2.8803 0.9032 9 7 5.4913 2.8523 1.0055 10 6 6.1401 3.8362 1.6592 11 8 5.5139 4.7457 2.1628 12 6 7.6293 3.8073 1.7639 13 8 8.2556 2.8979 1.2599 14 7 8.2782 4.7915 2.4173 15 6 9.6751 4.8124 2.4397 16 6 10.3875 3.6201 2.4921 17 6 11.7669 3.6409 2.5094 18 6 12.4439 4.8539 2.4845 19 8 13.8011 4.8743 2.5063 20 6 14.3938 6.0819 2.5926 21 1 13.7957 6.9805 2.5588 22 6 15.7712 6.1704 2.7246 23 7 16.3495 7.3490 2.8094 24 14 16.8055 4.6160 2.7837 25 1 17.2110 4.2387 1.4058 26 1 18.0171 4.8586 3.6072 27 1 16.0107 3.5150 3.3847 28 6 11.7321 6.0462 2.4378 29 6 10.3527 6.0258 2.4153 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.7227 2.9426 -1.5351 36 1 3.0112 1.1856 -2.0159 37 1 3.5955 2.8640 1.9027 38 1 3.7195 3.7886 0.3867 39 1 5.9918 2.1252 0.6033 40 1 7.7754 5.4831 2.8753 41 1 9.8613 2.6772 2.5159 42 1 12.3206 2.7143 2.5460 43 1 17.3131 7.4108 2.9021 44 1 12.2586 6.9890 2.4189 45 1 9.7995 6.9526 2.3786 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344448542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:59 Heat of formation + Delta-G solvation = -47.953807 kcal Electronic energy + Delta-G solvation = -26383.497230 eV Core-core repulsion = 22367.701452 eV Total energy + Delta-G solvation = -4015.795778 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.95300 -39.55598 -38.85447 -38.32273 -36.76078 -35.17738 -33.99653 -32.49630 -32.37304 -30.38462 -28.79940 -27.77794 -25.48604 -24.37195 -24.00788 -22.43257 -21.55547 -21.41310 -20.90520 -20.11529 -18.77628 -17.95112 -17.49785 -16.99034 -16.33506 -16.25763 -15.94865 -15.21831 -15.06956 -14.85985 -14.59726 -14.49638 -14.04203 -13.97171 -13.77949 -13.75332 -13.43316 -12.89370 -12.76467 -12.59038 -12.38604 -12.33590 -12.02581 -12.00318 -11.79375 -11.74025 -11.57307 -11.51793 -10.97163 -10.84861 -10.55942 -10.42774 -10.21131 -9.80862 -9.63656 -9.51746 -9.37584 -8.83330 -8.36729 -7.15972 -6.46054 -4.11892 1.18522 2.02566 2.06261 2.27400 3.13201 3.17371 3.21747 3.24176 3.38573 3.56408 3.99864 4.20684 4.27349 4.30129 4.40842 4.46196 4.65588 4.68209 4.81532 4.83056 4.89427 5.06561 5.18232 5.21468 5.24874 5.36521 5.43806 5.50287 5.56544 5.61182 5.62512 5.65369 5.85009 5.91512 5.94369 6.02806 6.07622 6.56444 6.66878 6.67876 6.90132 6.97934 7.15878 7.37282 7.49145 7.63745 7.72932 7.94470 8.02688 8.88751 9.50130 10.61164 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.035494 B = 0.001665 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.684762 B =16816.352425 C =17316.459712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.138 4.138 4 H 0.108 0.892 5 C -0.170 4.170 6 C -0.170 4.170 7 H 0.114 0.886 8 C 0.150 3.850 9 N -0.699 5.699 10 C 0.511 3.489 11 O -0.522 6.522 12 C 0.498 3.502 13 O -0.510 6.510 14 N -0.625 5.625 15 C 0.031 3.969 16 C -0.066 4.066 17 C -0.179 4.179 18 C 0.156 3.844 19 O -0.213 6.213 20 C -0.391 4.391 21 H 0.108 0.892 22 C 0.064 3.936 23 N -0.877 5.877 24 Si 0.906 3.094 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.259 1.259 28 C -0.207 4.207 29 C -0.082 4.082 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.415 0.585 40 H 0.415 0.585 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.280 0.720 44 H 0.140 0.860 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.095 -11.567 -4.680 30.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.133 4.133 3 C -0.157 4.157 4 H 0.126 0.874 5 C -0.207 4.207 6 C -0.189 4.189 7 H 0.132 0.868 8 C 0.026 3.974 9 N -0.353 5.353 10 C 0.292 3.708 11 O -0.398 6.398 12 C 0.279 3.721 13 O -0.385 6.385 14 N -0.270 5.270 15 C -0.061 4.061 16 C -0.086 4.086 17 C -0.199 4.199 18 C 0.104 3.896 19 O -0.117 6.117 20 C -0.466 4.466 21 H 0.125 0.875 22 C -0.139 4.139 23 N -0.514 5.514 24 Si 0.731 3.269 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.183 1.183 28 C -0.226 4.226 29 C -0.102 4.102 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.251 0.749 40 H 0.252 0.748 41 H 0.149 0.851 42 H 0.141 0.859 43 H 0.090 0.910 44 H 0.157 0.843 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -27.743 -11.600 -4.678 30.432 hybrid contribution 0.521 -0.286 -0.011 0.594 sum -27.222 -11.885 -4.689 30.072 Atomic orbital electron populations 1.21746 0.95277 1.01732 1.02007 1.21145 0.96155 0.93812 1.02208 1.22513 0.92314 0.98566 1.02267 0.87367 1.23302 1.03317 1.02800 0.91310 1.22566 0.96091 0.99655 1.00569 0.86840 1.21002 0.78787 0.97009 1.00553 1.45721 1.07838 1.26452 1.55287 1.20136 0.88519 0.82704 0.79439 1.90769 1.68553 1.34513 1.45922 1.20006 0.88043 0.83808 0.80225 1.90768 1.67853 1.33961 1.45935 1.42864 1.05811 1.27931 1.50430 1.17296 0.80410 0.94597 1.13785 1.20725 0.92867 0.96995 0.98018 1.20127 0.93075 0.96140 1.10545 1.19194 0.83733 0.93331 0.93387 1.83573 1.14726 1.33342 1.80101 1.20780 0.91812 0.82346 1.51669 0.87517 1.24477 0.95918 0.98072 0.95460 1.69646 1.11646 1.22979 1.47139 0.86175 0.79191 0.82724 0.78814 1.19829 1.20768 1.18269 1.21106 0.93140 0.99148 1.09252 1.20577 0.94033 0.95486 1.00152 0.92574 0.92624 0.92580 0.91709 0.91442 0.88436 0.88411 0.90467 0.90715 0.74881 0.74823 0.85127 0.85942 0.90966 0.84276 0.86539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.87 37.16 0.37 -0.25 16 2 C -0.10 -0.43 6.22 -26.73 -0.17 -0.60 16 3 C -0.14 -0.68 5.46 -90.58 -0.49 -1.18 16 4 H 0.11 0.52 8.08 -51.93 -0.42 0.10 16 5 C -0.17 -0.87 9.83 -26.69 -0.26 -1.14 16 6 C -0.17 -0.95 5.56 -90.62 -0.50 -1.45 16 7 H 0.11 0.60 8.04 -51.93 -0.42 0.18 16 8 C 0.15 1.10 5.96 -4.04 -0.02 1.07 16 9 N -0.70 -6.39 5.55 -60.78 -0.34 -6.73 16 10 C 0.51 6.15 7.88 -11.65 -0.09 6.06 16 11 O -0.52 -7.17 16.48 5.48 0.09 -7.08 16 12 C 0.50 6.94 7.72 -11.65 -0.09 6.85 16 13 O -0.51 -8.08 13.93 5.47 0.08 -8.01 16 14 N -0.62 -8.84 5.32 -10.27 -0.05 -8.89 16 15 C 0.03 0.54 6.29 -83.70 -0.53 0.01 16 16 C -0.07 -1.20 8.68 -39.40 -0.34 -1.55 16 17 C -0.18 -3.58 9.98 -39.42 -0.39 -3.97 16 18 C 0.16 3.55 6.65 -39.06 -0.26 3.29 16 19 O -0.21 -5.52 8.58 0.11 0.00 -5.51 16 20 C -0.39 -10.78 9.94 30.89 0.31 -10.47 16 21 H 0.11 2.98 5.43 -52.49 -0.28 2.70 16 22 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 23 N -0.88 -24.91 13.96 55.48 0.77 -24.13 16 24 Si 0.91 21.39 28.62 -169.99 -4.86 16.52 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 28 C -0.21 -4.30 9.16 -39.42 -0.36 -4.67 16 29 C -0.08 -1.44 9.96 -39.40 -0.39 -1.84 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.28 7.88 -51.93 -0.41 -0.13 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.10 0.50 8.03 -51.93 -0.42 0.08 16 36 H 0.10 0.46 8.03 -51.93 -0.42 0.04 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.57 7.88 -51.93 -0.41 0.17 16 39 H 0.41 3.39 7.87 -40.82 -0.32 3.06 16 40 H 0.42 5.00 8.30 -40.82 -0.34 4.66 16 41 H 0.13 2.25 6.25 -52.48 -0.33 1.92 16 42 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 43 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.14 3.01 5.63 -52.49 -0.30 2.71 16 45 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 384.97 15.07 5.80 5.80 Total: -1.00 -30.79 384.97 -8.00 -38.78 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.15 Total: 7.40 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -3.33 Total: -8.15 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.38 Total: -39.75 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: 0.17 Total: -20.60 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.86 Total: 16.52 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.79 -8.00 -38.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344448542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.173 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds