Wall clock time and date at job start Tue Mar 31 2020 17:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47265 * 2 1 4 4 H 1.09000 * 115.56714 * 29.30718 * 3 2 1 5 5 C 1.53077 * 117.49262 * 243.59972 * 3 2 1 6 6 C 1.53004 * 117.50171 * 174.99688 * 3 2 1 7 7 H 1.09003 * 117.49379 * 359.97438 * 6 3 2 8 8 C 1.52989 * 117.50199 * 214.97815 * 6 3 2 9 9 N 1.46505 * 109.47359 * 175.08912 * 8 6 3 10 10 C 1.34774 * 120.00128 * 180.02562 * 9 8 6 11 11 O 1.21365 * 120.00030 * 359.97438 * 10 9 8 12 12 C 1.49315 * 119.99953 * 179.97438 * 10 9 8 13 13 O 1.21384 * 120.00161 * 0.02562 * 12 10 9 14 14 N 1.34783 * 120.00105 * 179.97438 * 12 10 9 15 15 C 1.39731 * 120.00043 * 184.24229 * 14 12 10 16 16 C 1.38997 * 120.01218 * 324.62937 * 15 14 12 17 17 C 1.37966 * 119.99754 * 179.76879 * 16 15 14 18 18 C 1.38938 * 120.00589 * 0.48416 * 17 16 15 19 19 O 1.35757 * 119.99341 * 179.76724 * 18 17 16 20 20 C 1.34802 * 116.99803 * 185.36406 * 19 18 17 21 21 H 1.07991 * 120.00046 * 354.96257 * 20 19 18 22 22 C 1.38653 * 119.99757 * 174.96695 * 20 19 18 23 23 N 1.31563 * 119.99976 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00066 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.46807 * 90.00374 * 24 22 20 26 26 H 1.48495 * 109.47327 * 210.00114 * 24 22 20 27 27 H 1.48498 * 109.47110 * 330.00580 * 24 22 20 28 28 C 1.38938 * 120.01269 * 359.78628 * 18 17 16 29 29 C 1.37969 * 120.00547 * 359.96279 * 28 18 17 30 30 H 1.08998 * 109.46485 * 59.99990 * 1 2 3 31 31 H 1.08993 * 109.46892 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47292 * 300.00689 * 1 2 3 33 33 H 1.08999 * 109.47212 * 239.99811 * 2 1 3 34 34 H 1.09001 * 109.46857 * 119.99651 * 2 1 3 35 35 H 1.09003 * 117.51328 * 145.03586 * 5 3 2 36 36 H 1.09003 * 117.51505 * 359.97438 * 5 3 2 37 37 H 1.08999 * 109.47319 * 55.08686 * 8 6 3 38 38 H 1.09006 * 109.47306 * 295.08447 * 8 6 3 39 39 H 0.96997 * 119.99928 * 359.97438 * 9 8 6 40 40 H 0.96997 * 119.99768 * 4.51878 * 14 12 10 41 41 H 1.08007 * 119.99796 * 359.97438 * 16 15 14 42 42 H 1.08000 * 119.99982 * 180.25148 * 17 16 15 43 43 H 0.96997 * 119.99780 * 179.97438 * 23 22 20 44 44 H 1.07999 * 119.99481 * 179.97438 * 28 18 17 45 45 H 1.08001 * 119.99835 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3885 2.1718 0.4813 5 6 2.8449 1.9074 -1.2163 6 6 3.5502 1.6579 0.1184 7 1 4.1803 0.7719 0.1967 8 6 4.0301 2.8803 0.9032 9 7 5.4913 2.8523 1.0055 10 6 6.1401 3.8362 1.6592 11 8 5.5139 4.7457 2.1628 12 6 7.6293 3.8073 1.7639 13 8 8.2556 2.8979 1.2599 14 7 8.2782 4.7915 2.4173 15 6 9.6751 4.8124 2.4397 16 6 10.3875 3.6201 2.4921 17 6 11.7669 3.6409 2.5094 18 6 12.4439 4.8539 2.4845 19 8 13.8011 4.8743 2.5063 20 6 14.3938 6.0819 2.5926 21 1 13.7957 6.9805 2.5588 22 6 15.7712 6.1704 2.7246 23 7 16.3495 7.3490 2.8094 24 14 16.8055 4.6160 2.7837 25 1 17.2110 4.2387 1.4058 26 1 18.0171 4.8586 3.6072 27 1 16.0107 3.5150 3.3847 28 6 11.7321 6.0462 2.4378 29 6 10.3527 6.0258 2.4153 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.7227 2.9426 -1.5351 36 1 3.0112 1.1856 -2.0159 37 1 3.5955 2.8640 1.9027 38 1 3.7195 3.7886 0.3867 39 1 5.9918 2.1252 0.6033 40 1 7.7754 5.4831 2.8753 41 1 9.8613 2.6772 2.5159 42 1 12.3206 2.7143 2.5460 43 1 17.3131 7.4108 2.9021 44 1 12.2586 6.9890 2.4189 45 1 9.7995 6.9526 2.3786 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344448542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:58 Heat of formation + Delta-G solvation = -67.352394 kcal Electronic energy + Delta-G solvation = -26384.338416 eV Core-core repulsion = 22367.701452 eV Total energy + Delta-G solvation = -4016.636964 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.10029 -40.91862 -40.00994 -39.06609 -38.28561 -36.12899 -35.22682 -34.36018 -32.91550 -31.95615 -30.19452 -28.67152 -27.28888 -25.29643 -24.61659 -24.00608 -22.71808 -22.10922 -21.60959 -21.10507 -19.98155 -19.59389 -19.16912 -18.27498 -17.49846 -17.20153 -16.88250 -16.55606 -15.99008 -15.91282 -15.63764 -15.59681 -15.45972 -15.20392 -15.03108 -14.64719 -14.50563 -14.29696 -14.17857 -14.02615 -13.55309 -13.33456 -13.21027 -12.93584 -12.85617 -12.73579 -12.52356 -12.45171 -12.13225 -11.98637 -11.87192 -11.44367 -11.21913 -11.03275 -10.94251 -10.73758 -10.61915 -10.25681 -9.91270 -8.77607 -8.49057 -6.20711 0.02654 0.47023 0.64635 1.20469 1.33857 1.37444 1.53429 2.04589 2.29210 2.48717 2.74024 2.82729 3.00832 3.14321 3.32875 3.54084 3.86149 3.98515 3.99344 4.06935 4.19431 4.31168 4.42102 4.42593 4.50103 4.53219 4.62732 4.66636 4.71767 4.87157 4.99254 4.99713 5.03514 5.12089 5.18347 5.23602 5.25291 5.27952 5.33202 5.39926 5.49061 5.51517 5.73795 5.79626 5.92807 6.14030 6.28310 6.66751 6.85030 6.85648 7.57696 8.61914 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.035494 B = 0.001665 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.684762 B =16816.352425 C =17316.459712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.134 4.134 4 H 0.110 0.890 5 C -0.171 4.171 6 C -0.172 4.172 7 H 0.119 0.881 8 C 0.150 3.850 9 N -0.684 5.684 10 C 0.518 3.482 11 O -0.539 6.539 12 C 0.502 3.498 13 O -0.526 6.526 14 N -0.622 5.622 15 C 0.058 3.942 16 C -0.069 4.069 17 C -0.174 4.174 18 C 0.120 3.880 19 O -0.240 6.240 20 C -0.400 4.400 21 H 0.087 0.913 22 C 0.013 3.987 23 N -0.920 5.920 24 Si 0.967 3.033 25 H -0.267 1.267 26 H -0.268 1.268 27 H -0.262 1.262 28 C -0.214 4.214 29 C -0.078 4.078 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.421 0.579 40 H 0.428 0.572 41 H 0.146 0.854 42 H 0.134 0.866 43 H 0.285 0.715 44 H 0.123 0.877 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.744 -13.323 -5.061 33.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.133 4.133 3 C -0.153 4.153 4 H 0.128 0.872 5 C -0.207 4.207 6 C -0.190 4.190 7 H 0.137 0.863 8 C 0.027 3.973 9 N -0.337 5.337 10 C 0.298 3.702 11 O -0.417 6.417 12 C 0.285 3.715 13 O -0.402 6.402 14 N -0.269 5.269 15 C -0.035 4.035 16 C -0.088 4.088 17 C -0.194 4.194 18 C 0.070 3.930 19 O -0.148 6.148 20 C -0.476 4.476 21 H 0.104 0.896 22 C -0.186 4.186 23 N -0.560 5.560 24 Si 0.790 3.210 25 H -0.192 1.192 26 H -0.193 1.193 27 H -0.186 1.186 28 C -0.234 4.234 29 C -0.097 4.097 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.259 0.741 40 H 0.268 0.732 41 H 0.164 0.836 42 H 0.152 0.848 43 H 0.094 0.906 44 H 0.141 0.859 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -30.471 -13.382 -5.072 33.664 hybrid contribution 0.894 0.182 0.056 0.914 sum -29.576 -13.200 -5.016 32.775 Atomic orbital electron populations 1.21745 0.95032 1.01980 1.02000 1.21153 0.96368 0.93481 1.02304 1.22557 0.91816 0.98916 1.01980 0.87194 1.23359 1.03028 1.03029 0.91330 1.22502 0.96640 0.99065 1.00795 0.86278 1.21117 0.77334 0.97879 1.00936 1.45749 1.08712 1.25516 1.53692 1.19699 0.87332 0.83218 0.79991 1.90778 1.68396 1.35389 1.47106 1.20379 0.89001 0.82930 0.79220 1.90767 1.68506 1.34535 1.46374 1.42824 1.04499 1.28681 1.50889 1.17404 0.81970 0.94037 1.10112 1.20934 0.92168 0.98119 0.97607 1.20340 0.93896 0.95677 1.09465 1.19660 0.83072 0.94998 0.95255 1.83522 1.16302 1.32065 1.82878 1.20743 0.92199 0.82677 1.51961 0.89576 1.25236 0.96952 1.00975 0.95425 1.69723 1.12170 1.24708 1.49448 0.85262 0.77806 0.78872 0.79097 1.19213 1.19315 1.18638 1.21136 0.94623 0.98059 1.09589 1.20816 0.92751 0.97284 0.98889 0.92600 0.92289 0.92573 0.91512 0.91452 0.88414 0.87889 0.90403 0.90791 0.74139 0.73249 0.83625 0.84835 0.90568 0.85916 0.83122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.87 71.98 0.71 -0.27 16 2 C -0.10 -0.68 6.22 30.59 0.19 -0.49 16 3 C -0.13 -1.05 5.46 -10.77 -0.06 -1.11 16 4 H 0.11 0.83 8.08 -2.39 -0.02 0.81 16 5 C -0.17 -1.38 9.83 30.62 0.30 -1.08 16 6 C -0.17 -1.51 5.56 -10.79 -0.06 -1.57 16 7 H 0.12 0.95 8.04 -2.39 -0.02 0.93 16 8 C 0.15 1.84 5.96 86.37 0.51 2.35 16 9 N -0.68 -10.70 5.55 -464.55 -2.58 -13.28 16 10 C 0.52 11.06 7.88 87.23 0.69 11.75 16 11 O -0.54 -13.43 16.48 -3.29 -0.05 -13.48 16 12 C 0.50 12.56 7.72 87.23 0.67 13.23 16 13 O -0.53 -15.17 13.93 -3.35 -0.05 -15.22 16 14 N -0.62 -15.68 5.32 -304.75 -1.62 -17.30 16 15 C 0.06 1.83 6.29 38.25 0.24 2.07 16 16 C -0.07 -2.34 8.68 22.39 0.19 -2.14 16 17 C -0.17 -6.81 9.98 22.37 0.22 -6.59 16 18 C 0.12 5.51 6.65 22.61 0.15 5.66 16 19 O -0.24 -12.84 8.58 -22.53 -0.19 -13.03 16 20 C -0.40 -23.02 9.94 67.92 0.68 -22.35 16 21 H 0.09 5.13 5.43 -2.92 -0.02 5.11 16 22 C 0.01 0.74 5.49 84.83 0.47 1.21 16 23 N -0.92 -54.11 13.96 21.61 0.30 -53.81 16 24 Si 0.97 44.92 28.62 68.60 1.96 46.89 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 28 C -0.21 -9.01 9.16 22.37 0.20 -8.81 16 29 C -0.08 -2.58 9.96 22.39 0.22 -2.35 16 30 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.07 0.45 7.88 -2.39 -0.02 0.43 16 34 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.10 0.80 8.03 -2.39 -0.02 0.78 16 36 H 0.10 0.74 8.03 -2.39 -0.02 0.72 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 0.97 7.88 -2.38 -0.02 0.95 16 39 H 0.42 5.71 7.87 -92.71 -0.73 4.98 16 40 H 0.43 8.91 8.30 -92.71 -0.77 8.14 16 41 H 0.15 4.60 6.25 -2.91 -0.02 4.58 16 42 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 43 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 44 H 0.12 5.56 5.63 -2.91 -0.02 5.55 16 45 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -67.27 384.97 2.65 -64.62 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -0.46 Total: 25.10 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 5.34 Total: -10.49 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -3.90 Total: -84.39 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -0.29 Total: -41.73 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.96 Total: 46.89 kcal Total: -67.27 2.65 -64.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344448542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.736 kcal (2) G-P(sol) polarization free energy of solvation -67.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds