Wall clock time and date at job start Tue Mar 31 2020 17:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47229 * 2 1 4 4 H 1.08994 * 109.47118 * 305.00354 * 3 2 1 5 5 C 1.50698 * 109.47064 * 184.99948 * 3 2 1 6 6 H 1.08006 * 119.99673 * 239.99903 * 5 3 2 7 7 C 1.37876 * 120.00061 * 60.00361 * 5 3 2 8 8 N 1.31517 * 119.99661 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00093 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46904 * 90.00189 * 9 7 5 11 11 H 1.48502 * 109.47149 * 210.00173 * 9 7 5 12 12 H 1.48499 * 109.46872 * 330.00207 * 9 7 5 13 13 N 1.46504 * 109.46677 * 65.00052 * 3 2 1 14 14 C 1.34776 * 120.00117 * 274.99863 * 13 3 2 15 15 O 1.21364 * 120.00021 * 0.02562 * 14 13 3 16 16 C 1.49337 * 119.99938 * 179.97438 * 14 13 3 17 17 O 1.21386 * 119.99918 * 0.02562 * 16 14 13 18 18 N 1.34776 * 119.99938 * 179.97438 * 16 14 13 19 19 C 1.39866 * 120.00130 * 174.73142 * 18 16 14 20 20 C 1.38933 * 120.19953 * 146.92488 * 19 18 16 21 21 C 1.37831 * 120.27489 * 180.16042 * 20 19 18 22 22 C 1.39318 * 120.33804 * 359.97438 * 21 20 19 23 23 C 1.38914 * 119.00250 * 359.65343 * 22 21 20 24 24 C 1.37674 * 120.85931 * 0.30002 * 23 22 21 25 25 C 1.51666 * 107.04947 * 180.95799 * 23 22 21 26 26 C 1.54696 * 101.95022 * 15.15827 * 25 23 22 27 27 H 1.08998 * 110.74586 * 216.41708 * 26 25 23 28 28 C 1.52996 * 110.75377 * 93.24219 * 26 25 23 29 29 O 1.36223 * 129.80673 * 179.07390 * 22 21 20 30 30 H 1.09002 * 109.47037 * 299.99655 * 1 2 3 31 31 H 1.08995 * 109.47222 * 59.99504 * 1 2 3 32 32 H 1.08995 * 109.47110 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47222 * 120.00496 * 2 1 3 34 34 H 1.09002 * 109.47037 * 240.00345 * 2 1 3 35 35 H 0.97005 * 119.99383 * 179.97438 * 8 7 5 36 36 H 0.97001 * 120.00072 * 95.00193 * 13 3 2 37 37 H 0.97000 * 120.00120 * 354.72798 * 18 16 14 38 38 H 1.08004 * 119.85898 * 0.13780 * 20 19 18 39 39 H 1.07997 * 119.83267 * 180.02562 * 21 20 19 40 40 H 1.07996 * 120.04170 * 179.88798 * 24 23 22 41 41 H 1.08996 * 110.93103 * 133.32019 * 25 23 22 42 42 H 1.09000 * 110.93081 * 256.95362 * 25 23 22 43 43 H 1.09002 * 109.46931 * 59.99997 * 28 26 25 44 44 H 1.08993 * 109.47218 * 179.97438 * 28 26 25 45 45 H 1.09003 * 109.47074 * 300.00228 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0050 0.8813 -1.3818 10 1 6.5548 -0.3503 -0.7603 11 1 6.3830 0.9225 -2.8173 12 1 6.5570 2.0737 -0.6901 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6644 1.3671 15 8 -0.3401 2.6319 0.4339 16 6 0.0399 3.3314 2.6434 17 8 0.8151 3.3634 3.5769 18 7 -1.1772 3.8988 2.7584 19 6 -1.5899 4.4259 3.9864 20 6 -2.4185 5.5404 4.0255 21 6 -2.8234 6.0631 5.2349 22 6 -2.4064 5.4791 6.4290 23 6 -1.5843 4.3604 6.3805 24 6 -1.1781 3.8342 5.1748 25 6 -1.3201 3.9403 7.8136 26 6 -2.4095 4.7239 8.5832 27 1 -2.0318 5.0645 9.5472 28 6 -3.6649 3.8688 8.7665 29 8 -2.6712 5.8401 7.7155 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 3.8293 -0.0611 -2.9499 36 1 2.2720 2.1231 1.9979 37 1 -1.7670 3.9416 1.9895 38 1 -2.7465 5.9992 3.1044 39 1 -3.4680 6.9294 5.2569 40 1 -0.5374 2.9651 5.1526 41 1 -1.4542 2.8655 7.9354 42 1 -0.3228 4.2448 8.1312 43 1 -3.4134 2.9704 9.3302 44 1 -4.4172 4.4399 9.3104 45 1 -4.0582 3.5867 7.7898 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348279540.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:21 Heat of formation + Delta-G solvation = -76.999305 kcal Electronic energy + Delta-G solvation = -28006.049739 eV Core-core repulsion = 23988.994454 eV Total energy + Delta-G solvation = -4017.055285 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.51358 -40.50884 -38.69387 -37.38421 -35.44390 -34.36581 -33.38025 -32.43645 -31.06396 -31.01218 -29.36423 -27.32933 -27.08727 -24.84616 -23.23246 -22.59880 -21.83272 -21.62907 -20.30075 -19.51609 -18.63922 -17.50951 -17.31226 -16.71087 -16.37886 -16.00658 -15.67125 -15.51426 -15.07373 -14.49976 -14.31454 -14.25005 -13.95434 -13.65153 -13.41505 -13.34584 -12.98643 -12.77448 -12.76929 -12.54362 -12.46213 -12.11965 -11.64678 -11.58325 -11.43146 -11.37558 -11.29641 -11.06996 -10.95397 -10.86431 -10.38327 -10.29370 -9.95809 -9.73513 -9.17464 -9.14665 -8.98549 -8.59445 -8.07271 -7.85561 -6.19811 -4.29544 0.96774 1.14739 1.87093 2.64327 3.01298 3.22055 3.29191 3.32231 3.45987 3.72677 4.00376 4.14499 4.28160 4.36837 4.53858 4.69942 4.80481 4.89764 5.03983 5.06850 5.12732 5.17338 5.27905 5.41529 5.46977 5.54016 5.70256 5.74654 5.80975 6.10185 6.17618 6.23561 6.28490 6.33349 6.51587 6.52370 6.91302 6.96028 7.01655 7.11040 7.16793 7.24322 7.46916 7.60879 7.75203 7.89069 8.05487 8.40952 8.59049 8.83099 9.37365 10.85546 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022627 B = 0.002322 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.154360 B =12053.761202 C =12373.590708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.667 5.667 14 C 0.495 3.505 15 O -0.529 6.529 16 C 0.506 3.494 17 O -0.507 6.507 18 N -0.648 5.648 19 C 0.124 3.876 20 C -0.109 4.109 21 C -0.118 4.118 22 C 0.087 3.913 23 C -0.152 4.152 24 C -0.072 4.072 25 C -0.106 4.106 26 C 0.077 3.923 27 H 0.115 0.885 28 C -0.171 4.171 29 O -0.301 6.301 30 H 0.035 0.965 31 H 0.052 0.948 32 H 0.026 0.974 33 H 0.035 0.965 34 H 0.104 0.896 35 H 0.266 0.734 36 H 0.402 0.598 37 H 0.423 0.577 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.139 0.861 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.236 7.101 17.899 23.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.316 5.316 14 C 0.273 3.727 15 O -0.408 6.408 16 C 0.289 3.711 17 O -0.380 6.380 18 N -0.296 5.296 19 C 0.030 3.970 20 C -0.129 4.129 21 C -0.137 4.137 22 C 0.041 3.959 23 C -0.154 4.154 24 C -0.092 4.092 25 C -0.143 4.143 26 C 0.021 3.979 27 H 0.132 0.868 28 C -0.229 4.229 29 O -0.215 6.215 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.122 0.878 35 H 0.076 0.924 36 H 0.236 0.764 37 H 0.261 0.739 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.156 0.844 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.221 7.132 17.731 23.238 hybrid contribution 1.071 -0.147 -0.126 1.089 sum -12.150 6.985 17.605 22.502 Atomic orbital electron populations 1.21855 0.98293 0.98430 1.01032 1.21970 0.92652 0.99389 1.02793 1.19025 0.94803 0.89394 0.80083 0.92715 1.21203 0.90294 1.39449 1.06584 0.91770 1.24872 0.98845 0.94600 0.95227 1.69885 1.35268 1.37390 1.09347 0.86406 0.84516 0.78585 0.77401 1.20450 1.21017 1.19761 1.46469 1.13356 1.52530 1.19226 1.19576 0.84540 0.81546 0.87036 1.90746 1.51111 1.59542 1.39359 1.21024 0.81428 0.78850 0.89786 1.90739 1.50449 1.56252 1.40577 1.43179 1.17355 1.57385 1.11645 1.17505 0.99585 0.94666 0.85227 1.20622 0.99911 0.94397 0.97977 1.19973 1.03107 1.02262 0.88361 1.19521 0.95628 0.95145 0.85565 1.20547 1.00804 0.99002 0.94999 1.20269 0.99707 1.00066 0.89145 1.21872 0.99989 1.01856 0.90597 1.23400 0.94876 0.85560 0.94078 0.86761 1.22248 0.97548 0.99928 1.03127 1.86891 1.84803 1.36122 1.13724 0.94641 0.92919 0.95466 0.94663 0.87818 0.92427 0.76396 0.73860 0.84481 0.85001 0.84373 0.88883 0.88877 0.90660 0.91413 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.51 37.16 0.32 -2.60 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.16 16 3 C 0.27 6.50 2.24 -69.08 -0.15 6.35 16 4 H 0.06 1.51 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -13.88 8.73 -34.44 -0.30 -14.18 16 6 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -23.91 11.29 55.43 0.63 -23.29 16 9 Si 0.90 20.31 29.54 -169.99 -5.02 15.28 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.67 -13.85 5.01 -55.40 -0.28 -14.12 16 14 C 0.49 9.51 6.45 -11.64 -0.08 9.44 16 15 O -0.53 -10.98 13.62 5.48 0.07 -10.90 16 16 C 0.51 8.42 7.63 -11.64 -0.09 8.33 16 17 O -0.51 -9.11 14.18 5.47 0.08 -9.03 16 18 N -0.65 -8.80 5.33 -10.25 -0.05 -8.85 16 19 C 0.12 1.60 6.28 -83.65 -0.53 1.07 16 20 C -0.11 -1.15 9.94 -39.47 -0.39 -1.54 16 21 C -0.12 -1.23 10.05 -39.33 -0.40 -1.63 16 22 C 0.09 1.01 6.91 -38.93 -0.27 0.74 16 23 C -0.15 -1.79 6.26 -104.10 -0.65 -2.44 16 24 C -0.07 -0.95 8.65 -39.51 -0.34 -1.30 16 25 C -0.11 -0.93 6.65 -26.51 -0.18 -1.10 16 26 C 0.08 0.60 4.31 -25.84 -0.11 0.49 16 27 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 28 C -0.17 -1.12 9.51 37.16 0.35 -0.76 16 29 O -0.30 -3.30 10.83 -20.45 -0.22 -3.52 16 30 H 0.03 0.72 5.64 -51.93 -0.29 0.42 16 31 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 35 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.40 7.85 8.01 -40.82 -0.33 7.52 16 37 H 0.42 5.02 8.30 -40.82 -0.34 4.68 16 38 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 39 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.14 1.98 6.43 -52.49 -0.34 1.65 16 41 H 0.09 0.68 7.92 -51.93 -0.41 0.27 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -29.62 370.76 -8.42 -38.04 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -6.16 Total: 11.42 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -3.05 Total: -0.62 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.29 Total: -46.26 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.07 Total: -23.45 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.62 -8.42 -38.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348279540.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.955 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds