Wall clock time and date at job start Tue Mar 31 2020 17:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47229 * 2 1 4 4 H 1.08994 * 109.47118 * 305.00354 * 3 2 1 5 5 C 1.50698 * 109.47064 * 184.99948 * 3 2 1 6 6 H 1.08006 * 119.99673 * 239.99903 * 5 3 2 7 7 C 1.37876 * 120.00061 * 60.00361 * 5 3 2 8 8 N 1.31517 * 119.99661 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00093 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46904 * 90.00189 * 9 7 5 11 11 H 1.48502 * 109.47149 * 210.00173 * 9 7 5 12 12 H 1.48499 * 109.46872 * 330.00207 * 9 7 5 13 13 N 1.46504 * 109.46677 * 65.00052 * 3 2 1 14 14 C 1.34776 * 120.00117 * 274.99863 * 13 3 2 15 15 O 1.21364 * 120.00021 * 0.02562 * 14 13 3 16 16 C 1.49337 * 119.99938 * 179.97438 * 14 13 3 17 17 O 1.21386 * 119.99918 * 0.02562 * 16 14 13 18 18 N 1.34776 * 119.99938 * 179.97438 * 16 14 13 19 19 C 1.39866 * 120.00130 * 174.73142 * 18 16 14 20 20 C 1.38933 * 120.19953 * 146.92488 * 19 18 16 21 21 C 1.37831 * 120.27489 * 180.16042 * 20 19 18 22 22 C 1.39318 * 120.33804 * 359.97438 * 21 20 19 23 23 C 1.38914 * 119.00250 * 359.65343 * 22 21 20 24 24 C 1.37674 * 120.85931 * 0.30002 * 23 22 21 25 25 C 1.51666 * 107.04947 * 180.95799 * 23 22 21 26 26 C 1.54696 * 101.95022 * 15.15827 * 25 23 22 27 27 H 1.08998 * 110.74586 * 216.41708 * 26 25 23 28 28 C 1.52996 * 110.75377 * 93.24219 * 26 25 23 29 29 O 1.36223 * 129.80673 * 179.07390 * 22 21 20 30 30 H 1.09002 * 109.47037 * 299.99655 * 1 2 3 31 31 H 1.08995 * 109.47222 * 59.99504 * 1 2 3 32 32 H 1.08995 * 109.47110 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47222 * 120.00496 * 2 1 3 34 34 H 1.09002 * 109.47037 * 240.00345 * 2 1 3 35 35 H 0.97005 * 119.99383 * 179.97438 * 8 7 5 36 36 H 0.97001 * 120.00072 * 95.00193 * 13 3 2 37 37 H 0.97000 * 120.00120 * 354.72798 * 18 16 14 38 38 H 1.08004 * 119.85898 * 0.13780 * 20 19 18 39 39 H 1.07997 * 119.83267 * 180.02562 * 21 20 19 40 40 H 1.07996 * 120.04170 * 179.88798 * 24 23 22 41 41 H 1.08996 * 110.93103 * 133.32019 * 25 23 22 42 42 H 1.09000 * 110.93081 * 256.95362 * 25 23 22 43 43 H 1.09002 * 109.46931 * 59.99997 * 28 26 25 44 44 H 1.08993 * 109.47218 * 179.97438 * 28 26 25 45 45 H 1.09003 * 109.47074 * 300.00228 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0050 0.8813 -1.3818 10 1 6.5548 -0.3503 -0.7603 11 1 6.3830 0.9225 -2.8173 12 1 6.5570 2.0737 -0.6901 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6644 1.3671 15 8 -0.3401 2.6319 0.4339 16 6 0.0399 3.3314 2.6434 17 8 0.8151 3.3634 3.5769 18 7 -1.1772 3.8988 2.7584 19 6 -1.5899 4.4259 3.9864 20 6 -2.4185 5.5404 4.0255 21 6 -2.8234 6.0631 5.2349 22 6 -2.4064 5.4791 6.4290 23 6 -1.5843 4.3604 6.3805 24 6 -1.1781 3.8342 5.1748 25 6 -1.3201 3.9403 7.8136 26 6 -2.4095 4.7239 8.5832 27 1 -2.0318 5.0645 9.5472 28 6 -3.6649 3.8688 8.7665 29 8 -2.6712 5.8401 7.7155 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 3.8293 -0.0611 -2.9499 36 1 2.2720 2.1231 1.9979 37 1 -1.7670 3.9416 1.9895 38 1 -2.7465 5.9992 3.1044 39 1 -3.4680 6.9294 5.2569 40 1 -0.5374 2.9651 5.1526 41 1 -1.4542 2.8655 7.9354 42 1 -0.3228 4.2448 8.1312 43 1 -3.4134 2.9704 9.3302 44 1 -4.4172 4.4399 9.3104 45 1 -4.0582 3.5867 7.7898 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348279540.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:20 Heat of formation + Delta-G solvation = -95.896103 kcal Electronic energy + Delta-G solvation = -28006.869165 eV Core-core repulsion = 23988.994454 eV Total energy + Delta-G solvation = -4017.874712 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.41448 -41.76353 -40.11356 -38.47436 -37.18321 -35.56050 -34.30551 -34.10453 -32.82755 -31.78293 -30.36004 -29.15268 -27.83831 -26.28588 -24.86417 -23.70617 -22.67223 -22.51495 -21.80816 -21.20685 -20.06759 -18.58133 -18.34930 -18.04452 -17.63729 -17.19004 -17.00503 -16.93924 -16.56003 -15.94382 -15.60195 -15.30116 -15.04611 -14.76785 -14.62198 -14.56726 -14.14557 -13.90426 -13.78533 -13.59111 -13.49396 -13.21732 -13.20569 -13.07898 -12.97989 -12.74521 -12.65411 -12.28257 -12.18994 -12.11773 -12.10481 -11.81538 -11.61152 -11.10947 -10.94674 -10.63813 -10.53615 -9.91444 -9.84918 -8.79345 -8.19195 -6.36080 -0.08105 0.25835 0.59114 1.32097 1.44796 1.46398 1.56322 2.13436 2.27420 2.39335 2.67818 2.74846 3.10706 3.39290 3.51243 3.61969 3.87209 3.96348 4.11903 4.20906 4.28940 4.48128 4.48543 4.54528 4.57847 4.66652 4.70933 4.76890 4.89080 4.95168 5.01372 5.04063 5.17833 5.21548 5.23617 5.25990 5.35592 5.35735 5.38748 5.55044 5.57333 5.68739 5.78886 6.01220 6.10967 6.17161 6.55782 6.66449 6.79548 7.09815 7.35859 8.85924 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022627 B = 0.002322 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.154360 B =12053.761202 C =12373.590708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.276 3.724 4 H 0.016 0.984 5 C -0.554 4.554 6 H 0.067 0.933 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.269 1.269 13 N -0.671 5.671 14 C 0.496 3.504 15 O -0.545 6.545 16 C 0.515 3.485 17 O -0.523 6.523 18 N -0.630 5.630 19 C 0.099 3.901 20 C -0.098 4.098 21 C -0.120 4.120 22 C 0.082 3.918 23 C -0.164 4.164 24 C -0.088 4.088 25 C -0.107 4.107 26 C 0.074 3.926 27 H 0.140 0.860 28 C -0.168 4.168 29 O -0.313 6.313 30 H 0.040 0.960 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.039 0.961 34 H 0.079 0.921 35 H 0.267 0.733 36 H 0.408 0.592 37 H 0.431 0.569 38 H 0.164 0.836 39 H 0.157 0.843 40 H 0.121 0.879 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.848 7.902 19.737 25.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C 0.174 3.826 4 H 0.034 0.966 5 C -0.592 4.592 6 H 0.085 0.915 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.793 3.207 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.193 1.193 13 N -0.320 5.320 14 C 0.276 3.724 15 O -0.424 6.424 16 C 0.297 3.703 17 O -0.398 6.398 18 N -0.277 5.277 19 C 0.006 3.994 20 C -0.118 4.118 21 C -0.139 4.139 22 C 0.036 3.964 23 C -0.166 4.166 24 C -0.108 4.108 25 C -0.144 4.144 26 C 0.019 3.981 27 H 0.157 0.843 28 C -0.225 4.225 29 O -0.228 6.228 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.243 0.757 37 H 0.271 0.729 38 H 0.182 0.818 39 H 0.174 0.826 40 H 0.139 0.861 41 H 0.123 0.877 42 H 0.115 0.885 43 H 0.112 0.888 44 H 0.093 0.907 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.875 7.952 19.599 25.296 hybrid contribution 1.152 -0.334 -0.616 1.349 sum -12.723 7.619 18.983 24.089 Atomic orbital electron populations 1.21707 0.96524 0.99688 1.00427 1.21825 0.94177 0.98543 1.01702 1.18644 0.94066 0.89593 0.80302 0.96645 1.21513 0.91242 1.39516 1.06887 0.91462 1.25673 1.03138 0.94200 0.94894 1.70011 1.36967 1.37944 1.09774 0.85403 0.79276 0.78762 0.77263 1.19720 1.20896 1.19331 1.46242 1.14329 1.53121 1.18348 1.19971 0.83688 0.80850 0.87881 1.90733 1.51422 1.59892 1.40354 1.20334 0.82395 0.79340 0.88257 1.90740 1.51210 1.57307 1.40539 1.42987 1.16157 1.56125 1.12481 1.17701 1.01180 0.96071 0.84434 1.20890 0.98394 0.93211 0.99271 1.20321 1.02932 1.02724 0.87885 1.19803 0.95345 0.94944 0.86304 1.20824 1.00730 0.99206 0.95820 1.20250 1.00264 1.00130 0.90176 1.21991 1.00639 1.02832 0.88960 1.23693 0.95169 0.84912 0.94341 0.84289 1.22244 0.97074 1.00595 1.02585 1.86877 1.84718 1.37549 1.13629 0.94135 0.94501 0.93235 0.94186 0.90274 0.92361 0.75677 0.72897 0.81809 0.82579 0.86070 0.87684 0.88454 0.88772 0.90673 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.32 8.51 71.98 0.61 -4.71 16 2 C -0.12 -5.87 5.45 30.60 0.17 -5.71 16 3 C 0.28 13.77 2.24 44.25 0.10 13.87 16 4 H 0.02 0.90 7.58 -2.39 -0.02 0.88 16 5 C -0.55 -29.02 8.73 25.60 0.22 -28.80 16 6 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 7 C 0.02 1.15 5.29 84.65 0.45 1.60 16 8 N -0.91 -50.26 11.29 21.45 0.24 -50.02 16 9 Si 0.97 41.70 29.54 68.60 2.03 43.73 16 10 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 12 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 13 N -0.67 -28.35 5.01 -447.54 -2.24 -30.60 16 14 C 0.50 19.29 6.45 87.23 0.56 19.86 16 15 O -0.54 -22.89 13.62 -3.29 -0.04 -22.94 16 16 C 0.51 17.10 7.63 87.23 0.67 17.76 16 17 O -0.52 -18.88 14.18 -3.36 -0.05 -18.93 16 18 N -0.63 -16.71 5.33 -304.68 -1.62 -18.33 16 19 C 0.10 2.47 6.28 38.21 0.24 2.71 16 20 C -0.10 -1.88 9.94 22.34 0.22 -1.65 16 21 C -0.12 -2.25 10.05 22.43 0.23 -2.02 16 22 C 0.08 1.77 6.91 22.69 0.16 1.92 16 23 C -0.16 -3.72 6.26 -19.53 -0.12 -3.84 16 24 C -0.09 -2.32 8.65 22.32 0.19 -2.13 16 25 C -0.11 -1.72 6.65 30.73 0.20 -1.52 16 26 C 0.07 1.00 4.31 31.17 0.13 1.13 16 27 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 28 C -0.17 -1.83 9.51 71.98 0.68 -1.15 16 29 O -0.31 -6.26 10.83 -96.09 -1.04 -7.30 16 30 H 0.04 1.64 5.64 -2.39 -0.01 1.62 16 31 H 0.04 1.64 7.85 -2.39 -0.02 1.62 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.08 4.19 5.95 -2.39 -0.01 4.17 16 35 H 0.27 13.99 8.31 -92.70 -0.77 13.22 16 36 H 0.41 16.17 8.01 -92.71 -0.74 15.42 16 37 H 0.43 9.84 8.30 -92.71 -0.77 9.07 16 38 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 39 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 40 H 0.12 3.56 6.43 -2.91 -0.02 3.54 16 41 H 0.10 1.39 7.92 -2.39 -0.02 1.37 16 42 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.05 0.69 8.08 -2.39 -0.02 0.67 16 Total: -1.00 -64.41 370.76 1.51 -62.90 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: -0.47 Total: 34.15 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 4.72 Total: 7.34 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -3.63 Total: -98.95 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: -1.13 Total: -49.17 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -64.41 1.51 -62.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348279540.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.997 kcal (2) G-P(sol) polarization free energy of solvation -64.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds