Wall clock time and date at job start Tue Mar 31 2020 17:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47259 * 2 1 4 4 H 1.09004 * 109.47114 * 55.00021 * 3 2 1 5 5 C 1.50699 * 109.47164 * 174.99822 * 3 2 1 6 6 H 1.08006 * 119.99451 * 119.99750 * 5 3 2 7 7 C 1.37865 * 120.00258 * 300.00416 * 5 3 2 8 8 N 1.31517 * 120.00327 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 120.00087 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.46992 * 90.00273 * 9 7 5 11 11 H 1.48496 * 109.47338 * 210.00367 * 9 7 5 12 12 H 1.48501 * 109.47046 * 330.00411 * 9 7 5 13 13 N 1.46494 * 109.46864 * 295.00198 * 3 2 1 14 14 C 1.34774 * 120.00411 * 85.00443 * 13 3 2 15 15 O 1.21361 * 120.00156 * 359.97438 * 14 13 3 16 16 C 1.49338 * 120.00644 * 179.97438 * 14 13 3 17 17 O 1.21391 * 119.99237 * 359.97438 * 16 14 13 18 18 N 1.34773 * 120.00624 * 179.97438 * 16 14 13 19 19 C 1.39862 * 120.00340 * 185.27596 * 18 16 14 20 20 C 1.38946 * 120.19447 * 213.18759 * 19 18 16 21 21 C 1.37830 * 120.26530 * 179.85083 * 20 19 18 22 22 C 1.39314 * 120.34353 * 359.95590 * 21 20 19 23 23 C 1.38916 * 119.00607 * 0.39847 * 22 21 20 24 24 C 1.37659 * 120.85453 * 359.42684 * 23 22 21 25 25 C 1.51665 * 107.04694 * 179.02057 * 23 22 21 26 26 C 1.54699 * 101.94958 * 344.84878 * 25 23 22 27 27 H 1.09000 * 110.75336 * 266.93840 * 26 25 23 28 28 C 1.53000 * 110.90516 * 143.65944 * 26 25 23 29 29 O 1.36222 * 129.80237 * 180.96308 * 22 21 20 30 30 H 1.09002 * 109.47051 * 60.00071 * 1 2 3 31 31 H 1.08999 * 109.46851 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47085 * 300.00111 * 1 2 3 33 33 H 1.08994 * 109.46897 * 239.99656 * 2 1 3 34 34 H 1.09002 * 109.47051 * 119.99929 * 2 1 3 35 35 H 0.97003 * 120.00182 * 179.97438 * 8 7 5 36 36 H 0.97001 * 120.00266 * 264.99369 * 13 3 2 37 37 H 0.97003 * 119.99405 * 5.27087 * 18 16 14 38 38 H 1.07994 * 119.86411 * 359.82602 * 20 19 18 39 39 H 1.08000 * 119.82659 * 179.97438 * 21 20 19 40 40 H 1.08003 * 120.04663 * 180.37113 * 24 23 22 41 41 H 1.08996 * 110.93111 * 103.00896 * 25 23 22 42 42 H 1.08994 * 110.93245 * 226.68390 * 25 23 22 43 43 H 1.08995 * 109.47190 * 305.09659 * 28 26 25 44 44 H 1.09007 * 109.46993 * 65.09494 * 28 26 25 45 45 H 1.09004 * 109.47096 * 185.08700 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8783 1.2279 8 7 5.4540 0.8803 1.3362 9 14 3.0964 0.1099 2.5706 10 1 2.8745 -1.3261 2.2645 11 1 3.7941 0.2358 3.8754 12 1 1.7881 0.8092 2.6394 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3400 2.6320 -0.4338 16 6 0.0403 3.3325 -2.6428 17 8 0.8159 3.3653 -3.5760 18 7 -1.1772 3.8991 -2.7581 19 6 -1.5894 4.4271 -3.9859 20 6 -2.4170 5.5425 -4.0244 21 6 -2.8217 6.0658 -5.2335 22 6 -2.4043 5.4826 -6.4279 23 6 -1.5830 4.3633 -6.3800 24 6 -1.1734 3.8391 -5.1748 25 6 -1.3187 3.9440 -7.8134 26 6 -2.4073 4.7292 -8.5826 27 1 -3.3033 4.1219 -8.7112 28 6 -1.8807 5.2081 -9.9370 29 8 -2.6684 5.8449 -7.7142 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 5.8770 0.4824 2.1132 36 1 2.2719 2.1231 -1.9978 37 1 -1.7675 3.9406 -1.9895 38 1 -2.7449 6.0008 -3.1032 39 1 -3.4654 6.9328 -5.2552 40 1 -0.5299 2.9720 -5.1528 41 1 -0.3214 4.2487 -8.1306 42 1 -1.4536 2.8695 -7.9360 43 1 -0.9687 5.7861 -9.7884 44 1 -1.6657 4.3461 -10.5686 45 1 -2.6327 5.8330 -10.4188 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348279541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:26 Heat of formation + Delta-G solvation = -68.314240 kcal Electronic energy + Delta-G solvation = -27979.489405 eV Core-core repulsion = 23962.810732 eV Total energy + Delta-G solvation = -4016.678672 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.49935 -40.60283 -38.86885 -37.46975 -35.70624 -34.48010 -33.43864 -32.45636 -31.61259 -31.29196 -29.45405 -27.79276 -26.96908 -24.92576 -22.95878 -22.51117 -21.98846 -21.77343 -20.59250 -19.78441 -18.77199 -17.83275 -17.29899 -17.06343 -16.58711 -15.99625 -15.79603 -15.58873 -15.23402 -14.57235 -14.48944 -14.20393 -13.84368 -13.73480 -13.56355 -13.40613 -13.22333 -13.07116 -12.83426 -12.71917 -12.43564 -12.35393 -12.05243 -11.90411 -11.73485 -11.44501 -11.36276 -11.20327 -11.07827 -10.92218 -10.72352 -10.02052 -10.00143 -9.64039 -9.34683 -9.24780 -9.05463 -8.84703 -8.31807 -7.90374 -6.26757 -4.30895 0.91413 1.10592 1.76000 2.52830 2.94654 3.17964 3.30609 3.33146 3.36859 3.60965 3.89003 4.15488 4.22359 4.24845 4.55224 4.67233 4.77910 4.86103 4.89334 4.99894 5.05379 5.13377 5.24923 5.32466 5.44363 5.54500 5.64043 5.70526 5.76869 5.83838 5.91415 6.03655 6.05477 6.12948 6.19538 6.46644 6.50899 6.57178 6.66961 6.78404 6.92042 6.98085 7.09774 7.15222 7.35324 7.70596 8.00683 8.34945 8.48621 8.73824 9.31489 10.85047 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025539 B = 0.002343 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.092329 B =11949.697395 C =12366.775448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.241 3.759 4 H 0.055 0.945 5 C -0.539 4.539 6 H 0.083 0.917 7 C 0.080 3.920 8 N -0.888 5.888 9 Si 0.883 3.117 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.260 1.260 13 N -0.660 5.660 14 C 0.497 3.503 15 O -0.530 6.530 16 C 0.507 3.493 17 O -0.502 6.502 18 N -0.647 5.647 19 C 0.123 3.877 20 C -0.107 4.107 21 C -0.118 4.118 22 C 0.089 3.911 23 C -0.154 4.154 24 C -0.071 4.071 25 C -0.106 4.106 26 C 0.077 3.923 27 H 0.086 0.914 28 C -0.150 4.150 29 O -0.303 6.303 30 H 0.048 0.952 31 H 0.035 0.965 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.269 0.731 36 H 0.408 0.592 37 H 0.423 0.577 38 H 0.138 0.862 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.734 6.612 -17.196 25.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.138 3.862 4 H 0.073 0.927 5 C -0.577 4.577 6 H 0.101 0.899 7 C -0.124 4.124 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.184 1.184 13 N -0.309 5.309 14 C 0.276 3.724 15 O -0.409 6.409 16 C 0.290 3.710 17 O -0.376 6.376 18 N -0.295 5.295 19 C 0.029 3.971 20 C -0.128 4.128 21 C -0.137 4.137 22 C 0.043 3.957 23 C -0.156 4.156 24 C -0.091 4.091 25 C -0.143 4.143 26 C 0.021 3.979 27 H 0.104 0.896 28 C -0.207 4.207 29 O -0.218 6.218 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.244 0.756 37 H 0.261 0.739 38 H 0.156 0.844 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.557 6.699 -17.124 25.423 hybrid contribution -0.258 -0.602 0.797 1.032 sum -17.815 6.098 -16.326 24.922 Atomic orbital electron populations 1.21893 0.96890 0.99427 1.02060 1.22316 0.94392 0.99576 1.01633 1.19361 0.96227 0.88709 0.81897 0.92746 1.21002 0.88200 1.40329 1.08197 0.89873 1.24821 0.94907 0.95051 0.97605 1.69862 1.08678 1.44080 1.29786 0.86912 0.80919 0.79998 0.80977 1.20114 1.22004 1.18423 1.46102 1.13605 1.52519 1.18665 1.19623 0.84280 0.81296 0.87218 1.90742 1.51185 1.59536 1.39425 1.20842 0.81555 0.79074 0.89564 1.90763 1.50326 1.56068 1.40407 1.43140 1.17206 1.57381 1.11744 1.17492 0.99747 0.94774 0.85134 1.20622 0.99857 0.94290 0.97983 1.19972 1.03153 1.02263 0.88317 1.19516 0.95610 0.95050 0.85502 1.20569 1.00836 0.99096 0.95064 1.20270 0.99587 1.00094 0.89129 1.21881 1.00292 1.01723 0.90384 1.23372 0.97637 0.86053 0.90841 0.89637 1.21885 1.02170 1.02490 0.94134 1.86855 1.84644 1.36626 1.13648 0.93280 0.94581 0.92644 0.91919 0.92308 0.92133 0.75620 0.73863 0.84449 0.84936 0.84312 0.88789 0.88951 0.91350 0.90247 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.51 37.16 0.32 -2.41 16 2 C -0.14 -2.99 5.11 -26.73 -0.14 -3.12 16 3 C 0.24 5.50 1.83 -69.09 -0.13 5.37 16 4 H 0.05 1.34 6.63 -51.93 -0.34 1.00 16 5 C -0.54 -14.28 9.31 -34.44 -0.32 -14.60 16 6 H 0.08 2.35 7.98 -52.48 -0.42 1.93 16 7 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 8 N -0.89 -25.87 13.96 55.43 0.77 -25.10 16 9 Si 0.88 20.98 24.41 -169.99 -4.15 16.83 16 10 H -0.27 -6.32 6.83 56.52 0.39 -5.93 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.26 -6.03 6.53 56.52 0.37 -5.66 16 13 N -0.66 -13.04 5.01 -55.41 -0.28 -13.32 16 14 C 0.50 8.98 6.45 -11.64 -0.08 8.90 16 15 O -0.53 -10.20 13.62 5.49 0.07 -10.12 16 16 C 0.51 8.01 7.63 -11.64 -0.09 7.92 16 17 O -0.50 -8.73 14.16 5.46 0.08 -8.66 16 18 N -0.65 -8.29 5.33 -10.24 -0.05 -8.34 16 19 C 0.12 1.51 6.29 -83.65 -0.53 0.99 16 20 C -0.11 -1.09 9.94 -39.47 -0.39 -1.48 16 21 C -0.12 -1.20 10.05 -39.33 -0.40 -1.59 16 22 C 0.09 1.02 7.03 -38.93 -0.27 0.74 16 23 C -0.15 -1.78 6.27 -104.11 -0.65 -2.43 16 24 C -0.07 -0.91 8.65 -39.51 -0.34 -1.25 16 25 C -0.11 -0.91 6.65 -26.51 -0.18 -1.09 16 26 C 0.08 0.61 4.25 -25.84 -0.11 0.50 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 28 C -0.15 -0.86 9.61 37.16 0.36 -0.50 16 29 O -0.30 -3.31 10.81 -20.45 -0.22 -3.53 16 30 H 0.05 0.89 5.64 -51.93 -0.29 0.60 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 1.08 7.85 -51.93 -0.41 0.67 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.31 3.22 -51.93 -0.17 1.14 16 35 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.41 7.74 8.01 -40.82 -0.33 7.41 16 37 H 0.42 4.63 8.30 -40.82 -0.34 4.30 16 38 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.14 1.92 6.42 -52.48 -0.34 1.58 16 41 H 0.09 0.78 7.91 -51.93 -0.41 0.37 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 364.16 15.07 5.49 5.49 Total: -1.00 -31.00 364.16 -7.36 -38.36 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -6.03 Total: 10.35 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -3.04 Total: -1.96 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.44 Total: -46.76 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.07 Total: -22.30 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.15 Total: 16.83 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.00 -7.36 -38.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348279541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.955 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds