Wall clock time and date at job start Tue Mar 31 2020 17:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47259 * 2 1 4 4 H 1.09004 * 109.47114 * 55.00021 * 3 2 1 5 5 C 1.50699 * 109.47164 * 174.99822 * 3 2 1 6 6 H 1.08006 * 119.99451 * 119.99750 * 5 3 2 7 7 C 1.37865 * 120.00258 * 300.00416 * 5 3 2 8 8 N 1.31517 * 120.00327 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 120.00087 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.46992 * 90.00273 * 9 7 5 11 11 H 1.48496 * 109.47338 * 210.00367 * 9 7 5 12 12 H 1.48501 * 109.47046 * 330.00411 * 9 7 5 13 13 N 1.46494 * 109.46864 * 295.00198 * 3 2 1 14 14 C 1.34774 * 120.00411 * 85.00443 * 13 3 2 15 15 O 1.21361 * 120.00156 * 359.97438 * 14 13 3 16 16 C 1.49338 * 120.00644 * 179.97438 * 14 13 3 17 17 O 1.21391 * 119.99237 * 359.97438 * 16 14 13 18 18 N 1.34773 * 120.00624 * 179.97438 * 16 14 13 19 19 C 1.39862 * 120.00340 * 185.27596 * 18 16 14 20 20 C 1.38946 * 120.19447 * 213.18759 * 19 18 16 21 21 C 1.37830 * 120.26530 * 179.85083 * 20 19 18 22 22 C 1.39314 * 120.34353 * 359.95590 * 21 20 19 23 23 C 1.38916 * 119.00607 * 0.39847 * 22 21 20 24 24 C 1.37659 * 120.85453 * 359.42684 * 23 22 21 25 25 C 1.51665 * 107.04694 * 179.02057 * 23 22 21 26 26 C 1.54699 * 101.94958 * 344.84878 * 25 23 22 27 27 H 1.09000 * 110.75336 * 266.93840 * 26 25 23 28 28 C 1.53000 * 110.90516 * 143.65944 * 26 25 23 29 29 O 1.36222 * 129.80237 * 180.96308 * 22 21 20 30 30 H 1.09002 * 109.47051 * 60.00071 * 1 2 3 31 31 H 1.08999 * 109.46851 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47085 * 300.00111 * 1 2 3 33 33 H 1.08994 * 109.46897 * 239.99656 * 2 1 3 34 34 H 1.09002 * 109.47051 * 119.99929 * 2 1 3 35 35 H 0.97003 * 120.00182 * 179.97438 * 8 7 5 36 36 H 0.97001 * 120.00266 * 264.99369 * 13 3 2 37 37 H 0.97003 * 119.99405 * 5.27087 * 18 16 14 38 38 H 1.07994 * 119.86411 * 359.82602 * 20 19 18 39 39 H 1.08000 * 119.82659 * 179.97438 * 21 20 19 40 40 H 1.08003 * 120.04663 * 180.37113 * 24 23 22 41 41 H 1.08996 * 110.93111 * 103.00896 * 25 23 22 42 42 H 1.08994 * 110.93245 * 226.68390 * 25 23 22 43 43 H 1.08995 * 109.47190 * 305.09659 * 28 26 25 44 44 H 1.09007 * 109.46993 * 65.09494 * 28 26 25 45 45 H 1.09004 * 109.47096 * 185.08700 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8783 1.2279 8 7 5.4540 0.8803 1.3362 9 14 3.0964 0.1099 2.5706 10 1 2.8745 -1.3261 2.2645 11 1 3.7941 0.2358 3.8754 12 1 1.7881 0.8092 2.6394 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3400 2.6320 -0.4338 16 6 0.0403 3.3325 -2.6428 17 8 0.8159 3.3653 -3.5760 18 7 -1.1772 3.8991 -2.7581 19 6 -1.5894 4.4271 -3.9859 20 6 -2.4170 5.5425 -4.0244 21 6 -2.8217 6.0658 -5.2335 22 6 -2.4043 5.4826 -6.4279 23 6 -1.5830 4.3633 -6.3800 24 6 -1.1734 3.8391 -5.1748 25 6 -1.3187 3.9440 -7.8134 26 6 -2.4073 4.7292 -8.5826 27 1 -3.3033 4.1219 -8.7112 28 6 -1.8807 5.2081 -9.9370 29 8 -2.6684 5.8449 -7.7142 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 5.8770 0.4824 2.1132 36 1 2.2719 2.1231 -1.9978 37 1 -1.7675 3.9406 -1.9895 38 1 -2.7449 6.0008 -3.1032 39 1 -3.4654 6.9328 -5.2552 40 1 -0.5299 2.9720 -5.1528 41 1 -0.3214 4.2487 -8.1306 42 1 -1.4536 2.8695 -7.9360 43 1 -0.9687 5.7861 -9.7884 44 1 -1.6657 4.3461 -10.5686 45 1 -2.6327 5.8330 -10.4188 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348279541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:25 Heat of formation + Delta-G solvation = -89.993376 kcal Electronic energy + Delta-G solvation = -27980.429483 eV Core-core repulsion = 23962.810732 eV Total energy + Delta-G solvation = -4017.618750 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.40354 -41.78251 -40.20775 -38.50064 -37.35639 -35.59938 -34.41275 -34.14242 -33.25682 -31.99459 -30.41063 -29.58617 -27.70178 -26.26334 -24.56147 -23.62597 -22.75416 -22.63803 -22.01579 -21.31302 -20.15140 -18.72350 -18.56126 -18.31659 -17.76783 -17.50584 -17.17603 -16.85953 -16.35625 -16.02355 -15.65407 -15.33489 -15.11279 -15.00959 -14.69646 -14.43727 -14.14157 -14.08826 -13.93218 -13.79541 -13.69195 -13.51275 -13.45041 -12.99611 -12.96855 -12.90820 -12.68667 -12.41240 -12.34180 -12.05558 -11.86645 -11.83727 -11.38516 -11.29845 -10.94893 -10.88592 -10.63872 -9.99548 -9.93265 -8.80650 -8.38703 -6.46819 -0.10567 0.24670 0.55592 1.26822 1.29584 1.37253 1.46584 2.08294 2.23090 2.25920 2.64449 2.65942 2.96344 3.32902 3.48255 3.56954 3.83937 4.01002 4.11518 4.18679 4.20363 4.25078 4.29437 4.40351 4.51913 4.57911 4.64178 4.73403 4.75973 4.90046 4.95224 4.98705 5.03139 5.07268 5.15091 5.19165 5.23055 5.24559 5.27924 5.34541 5.45687 5.48975 5.57385 5.87564 6.10902 6.16116 6.49230 6.56588 6.72383 6.96348 7.20976 8.76577 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025539 B = 0.002343 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.092329 B =11949.697395 C =12366.775448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.249 3.751 4 H 0.040 0.960 5 C -0.541 4.541 6 H 0.051 0.949 7 C 0.029 3.971 8 N -0.933 5.933 9 Si 0.940 3.060 10 H -0.258 1.258 11 H -0.294 1.294 12 H -0.250 1.250 13 N -0.667 5.667 14 C 0.502 3.498 15 O -0.538 6.538 16 C 0.514 3.486 17 O -0.523 6.523 18 N -0.628 5.628 19 C 0.100 3.900 20 C -0.096 4.096 21 C -0.119 4.119 22 C 0.081 3.919 23 C -0.168 4.168 24 C -0.087 4.087 25 C -0.107 4.107 26 C 0.073 3.927 27 H 0.100 0.900 28 C -0.146 4.146 29 O -0.316 6.316 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.271 0.729 36 H 0.410 0.590 37 H 0.433 0.567 38 H 0.167 0.833 39 H 0.157 0.843 40 H 0.123 0.877 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.060 0.940 44 H 0.100 0.900 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.546 6.749 -17.857 28.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C 0.145 3.855 4 H 0.058 0.942 5 C -0.579 4.579 6 H 0.069 0.931 7 C -0.171 4.171 8 N -0.572 5.572 9 Si 0.766 3.234 10 H -0.184 1.184 11 H -0.221 1.221 12 H -0.174 1.174 13 N -0.317 5.317 14 C 0.282 3.718 15 O -0.417 6.417 16 C 0.296 3.704 17 O -0.398 6.398 18 N -0.276 5.276 19 C 0.006 3.994 20 C -0.115 4.115 21 C -0.138 4.138 22 C 0.035 3.965 23 C -0.169 4.169 24 C -0.107 4.107 25 C -0.144 4.144 26 C 0.018 3.982 27 H 0.118 0.882 28 C -0.203 4.203 29 O -0.231 6.231 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.246 0.754 37 H 0.273 0.727 38 H 0.184 0.816 39 H 0.175 0.825 40 H 0.140 0.860 41 H 0.112 0.888 42 H 0.124 0.876 43 H 0.079 0.921 44 H 0.119 0.881 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.425 6.853 -17.810 27.953 hybrid contribution 0.582 -0.535 0.861 1.169 sum -19.843 6.318 -16.949 26.850 Atomic orbital electron populations 1.21801 0.94689 1.01133 1.01787 1.22239 0.96307 0.97855 1.01456 1.19038 0.93616 0.90106 0.82774 0.94247 1.21232 0.90212 1.39247 1.07210 0.93065 1.25615 0.95876 0.95688 0.99968 1.69989 1.10529 1.45789 1.30881 0.85979 0.79511 0.80005 0.77878 1.18383 1.22098 1.17419 1.45937 1.14630 1.53317 1.17817 1.19901 0.83375 0.80564 0.87962 1.90730 1.51267 1.59633 1.40084 1.20278 0.82435 0.79492 0.88203 1.90768 1.51198 1.57233 1.40593 1.42951 1.16036 1.56082 1.12498 1.17682 1.01167 0.96084 0.84423 1.20906 0.98300 0.93078 0.99259 1.20329 1.02957 1.02701 0.87825 1.19819 0.95495 0.94955 0.86224 1.20842 1.00868 0.99374 0.95863 1.20260 1.00112 1.00197 0.90149 1.21985 1.00686 1.02789 0.88895 1.23637 0.98017 0.85448 0.91069 0.88219 1.21912 1.01819 1.03365 0.93225 1.86842 1.84607 1.38011 1.13656 0.93072 0.91909 0.93345 0.91466 0.93102 0.91957 0.75378 0.72717 0.81596 0.82514 0.85953 0.88754 0.87552 0.92118 0.88149 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.81 8.51 71.98 0.61 -4.20 16 2 C -0.14 -5.76 5.11 30.59 0.16 -5.60 16 3 C 0.25 11.33 1.83 44.24 0.08 11.41 16 4 H 0.04 1.93 6.63 -2.38 -0.02 1.92 16 5 C -0.54 -29.34 9.31 25.60 0.24 -29.10 16 6 H 0.05 3.03 7.98 -2.91 -0.02 3.01 16 7 C 0.03 1.59 5.45 84.65 0.46 2.05 16 8 N -0.93 -55.79 13.96 21.44 0.30 -55.49 16 9 Si 0.94 43.08 24.41 68.60 1.67 44.75 16 10 H -0.26 -11.10 6.83 99.48 0.68 -10.42 16 11 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.25 -10.99 6.53 99.48 0.65 -10.34 16 13 N -0.67 -26.54 5.01 -447.56 -2.24 -28.79 16 14 C 0.50 17.86 6.45 87.23 0.56 18.42 16 15 O -0.54 -20.05 13.62 -3.28 -0.04 -20.09 16 16 C 0.51 16.01 7.63 87.23 0.67 16.67 16 17 O -0.52 -18.32 14.16 -3.38 -0.05 -18.37 16 18 N -0.63 -15.31 5.33 -304.67 -1.62 -16.94 16 19 C 0.10 2.34 6.29 38.21 0.24 2.58 16 20 C -0.10 -1.72 9.94 22.34 0.22 -1.49 16 21 C -0.12 -2.15 10.05 22.43 0.23 -1.92 16 22 C 0.08 1.73 7.03 22.69 0.16 1.89 16 23 C -0.17 -3.76 6.27 -19.53 -0.12 -3.88 16 24 C -0.09 -2.22 8.65 22.32 0.19 -2.03 16 25 C -0.11 -1.73 6.65 30.74 0.20 -1.53 16 26 C 0.07 1.03 4.25 31.17 0.13 1.16 16 27 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 28 C -0.15 -1.39 9.61 71.98 0.69 -0.70 16 29 O -0.32 -6.40 10.81 -96.08 -1.04 -7.44 16 30 H 0.05 1.76 5.64 -2.39 -0.01 1.74 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.05 1.76 7.85 -2.39 -0.02 1.75 16 33 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.05 2.17 3.22 -2.39 -0.01 2.16 16 35 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.41 15.97 8.01 -92.71 -0.74 15.23 16 37 H 0.43 8.69 8.30 -92.71 -0.77 7.92 16 38 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 40 H 0.12 3.47 6.42 -2.91 -0.02 3.45 16 41 H 0.09 1.50 7.91 -2.39 -0.02 1.48 16 42 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.06 0.68 8.12 -2.39 -0.02 0.66 16 44 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 45 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -67.53 364.16 1.15 -66.38 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -0.55 Total: 32.25 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 4.72 Total: 3.73 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -3.57 Total: -101.21 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -1.13 Total: -45.90 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.67 Total: 44.75 kcal Total: -67.53 1.15 -66.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348279541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.612 kcal (2) G-P(sol) polarization free energy of solvation -67.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds