Wall clock time and date at job start Tue Mar 31 2020 17:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47276 * 2 1 4 4 H 1.08998 * 109.46972 * 305.67844 * 3 2 1 5 5 C 1.50703 * 109.47301 * 185.67850 * 3 2 1 6 6 H 1.07998 * 119.99757 * 275.00337 * 5 3 2 7 7 C 1.37879 * 120.00091 * 95.00316 * 5 3 2 8 8 N 1.31512 * 120.00032 * 184.77259 * 7 5 3 9 9 Si 1.86805 * 119.99876 * 4.77643 * 7 5 3 10 10 H 1.48500 * 109.46892 * 84.90707 * 9 7 5 11 11 H 1.48495 * 109.46972 * 204.90729 * 9 7 5 12 12 H 1.48500 * 109.46949 * 324.90845 * 9 7 5 13 13 N 1.46500 * 109.47472 * 65.67685 * 3 2 1 14 14 C 1.34778 * 119.99785 * 275.00400 * 13 3 2 15 15 O 1.21364 * 120.00165 * 0.02562 * 14 13 3 16 16 C 1.49339 * 119.99640 * 179.97438 * 14 13 3 17 17 O 1.21379 * 120.00126 * 359.97438 * 16 14 13 18 18 N 1.34778 * 119.99640 * 179.97438 * 16 14 13 19 19 C 1.39862 * 119.99699 * 184.65697 * 18 16 14 20 20 C 1.38945 * 120.19331 * 144.97754 * 19 18 16 21 21 C 1.37834 * 120.26873 * 180.15945 * 20 19 18 22 22 C 1.39319 * 120.34350 * 359.97438 * 21 20 19 23 23 C 1.38925 * 118.99904 * 359.72799 * 22 21 20 24 24 C 1.37669 * 120.85740 * 0.15373 * 23 22 21 25 25 C 1.51660 * 107.04495 * 180.56359 * 23 22 21 26 26 C 1.54710 * 101.93421 * 15.38307 * 25 23 22 27 27 H 1.08993 * 110.74737 * 93.18813 * 26 25 23 28 28 C 1.53008 * 110.74449 * 216.35868 * 26 25 23 29 29 O 1.36222 * 129.79986 * 179.06916 * 22 21 20 30 30 H 1.09000 * 109.46776 * 60.00236 * 1 2 3 31 31 H 1.09005 * 109.46999 * 299.99990 * 1 2 3 32 32 H 1.09001 * 109.46836 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47261 * 119.99558 * 2 1 3 34 34 H 1.09003 * 109.47683 * 239.99711 * 2 1 3 35 35 H 0.97002 * 119.99635 * 180.02562 * 8 7 5 36 36 H 0.96996 * 120.00071 * 94.99845 * 13 3 2 37 37 H 0.97003 * 119.99784 * 4.65590 * 18 16 14 38 38 H 1.08001 * 119.86234 * 0.13254 * 20 19 18 39 39 H 1.08004 * 119.82852 * 179.97438 * 21 20 19 40 40 H 1.07996 * 120.03522 * 179.97438 * 24 23 22 41 41 H 1.08992 * 110.93878 * 133.53765 * 25 23 22 42 42 H 1.08992 * 110.93950 * 257.22262 * 25 23 22 43 43 H 1.08994 * 109.47127 * 59.99869 * 28 26 25 44 44 H 1.08995 * 109.46430 * 180.02562 * 28 26 25 45 45 H 1.09002 * 109.46922 * 299.99497 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5960 1.9848 -0.8348 5 6 3.5405 1.4448 -0.1406 6 1 4.1649 1.3334 0.7335 7 6 4.1161 1.5892 -1.3851 8 7 5.4210 1.4974 -1.5208 9 14 3.0424 1.9153 -2.8786 10 1 2.7757 3.3721 -2.9879 11 1 3.7411 1.4468 -4.1023 12 1 1.7569 1.1863 -2.7327 13 7 1.6665 2.0926 1.2586 14 6 0.4505 2.6590 1.3895 15 8 -0.3351 2.6301 0.4649 16 6 0.0696 3.3212 2.6727 17 8 0.8548 3.3490 3.5978 18 7 -1.1462 3.8881 2.8034 19 6 -1.4677 4.5924 3.9682 20 6 -2.2823 5.7161 3.9029 21 6 -2.5975 6.4133 5.0494 22 6 -2.1032 5.9981 6.2839 23 6 -1.2945 4.8699 6.3407 24 6 -0.9791 4.1690 5.1985 25 6 -0.9269 4.6592 7.7969 26 6 -1.9545 5.5618 8.5201 27 1 -2.8391 4.9907 8.8017 28 6 -1.3253 6.2235 9.7478 29 8 -2.2747 6.5439 7.5202 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 5.8259 1.5993 -2.3963 36 1 2.2942 2.1153 1.9977 37 1 -1.7981 3.8076 2.0897 38 1 -2.6697 6.0448 2.9499 39 1 -3.2310 7.2861 4.9903 40 1 -0.3489 3.2940 5.2579 41 1 -1.0551 3.6157 8.0840 42 1 0.0916 4.9935 7.9938 43 1 -0.4778 6.8343 9.4370 44 1 -2.0660 6.8529 10.2409 45 1 -0.9840 5.4540 10.4404 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348279543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:35 Heat of formation + Delta-G solvation = -76.889265 kcal Electronic energy + Delta-G solvation = -27963.511864 eV Core-core repulsion = 23946.461350 eV Total energy + Delta-G solvation = -4017.050513 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.47720 -40.55876 -38.81039 -37.43372 -35.57963 -34.42370 -33.42650 -32.43390 -31.55018 -31.26716 -29.43462 -27.79826 -26.93880 -24.85423 -23.00918 -22.52224 -21.97381 -21.69868 -20.38932 -19.71850 -18.70424 -17.82809 -17.25251 -17.08945 -16.65079 -15.90511 -15.85776 -15.54725 -15.08892 -14.51370 -14.45073 -14.13042 -13.83864 -13.72378 -13.53940 -13.39596 -13.19384 -12.85490 -12.82371 -12.71040 -12.39695 -12.32944 -12.04675 -11.94008 -11.71358 -11.40563 -11.32678 -11.06039 -10.97191 -10.78711 -10.76041 -10.10671 -9.94967 -9.92212 -9.32654 -9.23674 -9.03343 -8.78693 -8.26822 -7.89982 -6.30655 -4.35669 0.94515 1.13680 1.78679 2.57417 2.95623 3.20790 3.28844 3.33918 3.40967 3.63605 3.93766 4.17196 4.24174 4.25233 4.56756 4.69542 4.79349 4.87621 4.89479 5.02646 5.13246 5.14703 5.25809 5.35057 5.46332 5.56663 5.65788 5.72022 5.79881 5.93668 5.97165 6.09429 6.10783 6.15587 6.22148 6.49012 6.50403 6.65457 6.77942 6.85007 6.96454 7.02523 7.16498 7.20325 7.36813 7.74172 8.01642 8.37644 8.55141 8.72769 9.29151 10.80670 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022581 B = 0.002403 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.708922 B =11648.689722 C =11961.271670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.234 3.766 4 H 0.056 0.944 5 C -0.534 4.534 6 H 0.082 0.918 7 C 0.083 3.917 8 N -0.883 5.883 9 Si 0.873 3.127 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.258 1.258 13 N -0.662 5.662 14 C 0.494 3.506 15 O -0.534 6.534 16 C 0.506 3.494 17 O -0.504 6.504 18 N -0.648 5.648 19 C 0.119 3.881 20 C -0.106 4.106 21 C -0.119 4.119 22 C 0.090 3.910 23 C -0.157 4.157 24 C -0.070 4.070 25 C -0.106 4.106 26 C 0.077 3.923 27 H 0.086 0.914 28 C -0.150 4.150 29 O -0.303 6.303 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.269 0.731 36 H 0.406 0.594 37 H 0.423 0.577 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.143 0.857 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.659 6.779 17.173 24.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C 0.133 3.867 4 H 0.073 0.927 5 C -0.572 4.572 6 H 0.100 0.900 7 C -0.122 4.122 8 N -0.519 5.519 9 Si 0.699 3.301 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.182 1.182 13 N -0.311 5.311 14 C 0.273 3.727 15 O -0.413 6.413 16 C 0.289 3.711 17 O -0.378 6.378 18 N -0.295 5.295 19 C 0.025 3.975 20 C -0.126 4.126 21 C -0.139 4.139 22 C 0.044 3.956 23 C -0.158 4.158 24 C -0.090 4.090 25 C -0.143 4.143 26 C 0.021 3.979 27 H 0.104 0.896 28 C -0.207 4.207 29 O -0.218 6.218 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.242 0.758 37 H 0.261 0.739 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.161 0.839 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.460 6.944 17.041 24.689 hybrid contribution -0.324 0.075 -0.849 0.911 sum -16.784 7.019 16.192 24.355 Atomic orbital electron populations 1.21925 0.97397 0.99225 1.01839 1.22092 0.93670 0.98986 1.01763 1.19388 0.96061 0.89350 0.81940 0.92666 1.20978 0.88308 1.52159 0.95732 0.90014 1.24943 0.94925 0.93532 0.98808 1.69875 1.09744 1.47592 1.24655 0.86913 0.81269 0.79698 0.82243 1.19759 1.21031 1.18240 1.46654 1.13243 1.52335 1.18892 1.19723 0.84518 0.81312 0.87140 1.90732 1.50662 1.59591 1.40358 1.20946 0.81541 0.79089 0.89500 1.90733 1.50268 1.56122 1.40667 1.43133 1.15705 1.52148 1.18536 1.17514 1.00585 0.93559 0.85819 1.20651 1.00111 0.93316 0.98538 1.19971 1.03024 1.02215 0.88650 1.19533 0.95861 0.93531 0.86664 1.20598 1.01039 0.98575 0.95598 1.20414 0.99448 1.00195 0.88934 1.21877 1.00481 1.01519 0.90385 1.23369 0.97373 0.88300 0.88865 0.89613 1.21888 1.01546 1.01648 0.95617 1.86848 1.85212 1.37252 1.12464 0.92879 0.93507 0.94715 0.92650 0.91558 0.92062 0.75840 0.73909 0.84466 0.84964 0.83886 0.88971 0.88812 0.91297 0.91370 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.53 37.16 0.32 -2.40 16 2 C -0.13 -2.60 5.59 -26.73 -0.15 -2.75 16 3 C 0.23 5.32 1.89 -69.08 -0.13 5.19 16 4 H 0.06 1.34 4.73 -51.93 -0.25 1.10 16 5 C -0.53 -13.99 9.05 -34.44 -0.31 -14.30 16 6 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 7 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 8 N -0.88 -25.49 13.96 55.43 0.77 -24.72 16 9 Si 0.87 20.74 26.99 -169.99 -4.59 16.16 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.26 -5.94 6.82 56.52 0.39 -5.55 16 13 N -0.66 -13.25 5.02 -55.40 -0.28 -13.53 16 14 C 0.49 9.12 6.49 -11.64 -0.08 9.05 16 15 O -0.53 -10.49 13.62 5.48 0.07 -10.42 16 16 C 0.51 8.19 7.73 -11.64 -0.09 8.10 16 17 O -0.50 -8.89 13.93 5.47 0.08 -8.81 16 18 N -0.65 -8.52 5.33 -10.25 -0.05 -8.57 16 19 C 0.12 1.51 6.30 -83.65 -0.53 0.98 16 20 C -0.11 -1.11 9.94 -39.47 -0.39 -1.50 16 21 C -0.12 -1.25 10.05 -39.33 -0.40 -1.65 16 22 C 0.09 1.05 7.04 -38.93 -0.27 0.77 16 23 C -0.16 -1.84 6.27 -104.10 -0.65 -2.49 16 24 C -0.07 -0.92 8.69 -39.51 -0.34 -1.26 16 25 C -0.11 -0.93 6.65 -26.51 -0.18 -1.11 16 26 C 0.08 0.62 4.26 -25.83 -0.11 0.51 16 27 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 28 C -0.15 -0.88 9.58 37.16 0.36 -0.52 16 29 O -0.30 -3.36 10.81 -20.45 -0.22 -3.59 16 30 H 0.05 1.03 7.89 -51.93 -0.41 0.62 16 31 H 0.05 0.85 5.63 -51.93 -0.29 0.56 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.41 7.80 8.06 -40.82 -0.33 7.47 16 37 H 0.42 4.78 8.30 -40.82 -0.34 4.44 16 38 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 40 H 0.14 2.02 6.25 -52.49 -0.33 1.69 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.79 7.92 -51.93 -0.41 0.38 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 370.62 15.07 5.59 5.59 Total: -1.00 -30.70 370.62 -7.84 -38.54 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.16 Total: 10.58 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -3.05 Total: -1.22 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.44 Total: -46.82 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.07 Total: -22.82 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.59 Total: 16.16 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.70 -7.84 -38.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348279543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.352 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds