Wall clock time and date at job start Tue Mar 31 2020 17:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47276 * 2 1 4 4 H 1.08998 * 109.46972 * 305.67844 * 3 2 1 5 5 C 1.50703 * 109.47301 * 185.67850 * 3 2 1 6 6 H 1.07998 * 119.99757 * 275.00337 * 5 3 2 7 7 C 1.37879 * 120.00091 * 95.00316 * 5 3 2 8 8 N 1.31512 * 120.00032 * 184.77259 * 7 5 3 9 9 Si 1.86805 * 119.99876 * 4.77643 * 7 5 3 10 10 H 1.48500 * 109.46892 * 84.90707 * 9 7 5 11 11 H 1.48495 * 109.46972 * 204.90729 * 9 7 5 12 12 H 1.48500 * 109.46949 * 324.90845 * 9 7 5 13 13 N 1.46500 * 109.47472 * 65.67685 * 3 2 1 14 14 C 1.34778 * 119.99785 * 275.00400 * 13 3 2 15 15 O 1.21364 * 120.00165 * 0.02562 * 14 13 3 16 16 C 1.49339 * 119.99640 * 179.97438 * 14 13 3 17 17 O 1.21379 * 120.00126 * 359.97438 * 16 14 13 18 18 N 1.34778 * 119.99640 * 179.97438 * 16 14 13 19 19 C 1.39862 * 119.99699 * 184.65697 * 18 16 14 20 20 C 1.38945 * 120.19331 * 144.97754 * 19 18 16 21 21 C 1.37834 * 120.26873 * 180.15945 * 20 19 18 22 22 C 1.39319 * 120.34350 * 359.97438 * 21 20 19 23 23 C 1.38925 * 118.99904 * 359.72799 * 22 21 20 24 24 C 1.37669 * 120.85740 * 0.15373 * 23 22 21 25 25 C 1.51660 * 107.04495 * 180.56359 * 23 22 21 26 26 C 1.54710 * 101.93421 * 15.38307 * 25 23 22 27 27 H 1.08993 * 110.74737 * 93.18813 * 26 25 23 28 28 C 1.53008 * 110.74449 * 216.35868 * 26 25 23 29 29 O 1.36222 * 129.79986 * 179.06916 * 22 21 20 30 30 H 1.09000 * 109.46776 * 60.00236 * 1 2 3 31 31 H 1.09005 * 109.46999 * 299.99990 * 1 2 3 32 32 H 1.09001 * 109.46836 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47261 * 119.99558 * 2 1 3 34 34 H 1.09003 * 109.47683 * 239.99711 * 2 1 3 35 35 H 0.97002 * 119.99635 * 180.02562 * 8 7 5 36 36 H 0.96996 * 120.00071 * 94.99845 * 13 3 2 37 37 H 0.97003 * 119.99784 * 4.65590 * 18 16 14 38 38 H 1.08001 * 119.86234 * 0.13254 * 20 19 18 39 39 H 1.08004 * 119.82852 * 179.97438 * 21 20 19 40 40 H 1.07996 * 120.03522 * 179.97438 * 24 23 22 41 41 H 1.08992 * 110.93878 * 133.53765 * 25 23 22 42 42 H 1.08992 * 110.93950 * 257.22262 * 25 23 22 43 43 H 1.08994 * 109.47127 * 59.99869 * 28 26 25 44 44 H 1.08995 * 109.46430 * 180.02562 * 28 26 25 45 45 H 1.09002 * 109.46922 * 299.99497 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5960 1.9848 -0.8348 5 6 3.5405 1.4448 -0.1406 6 1 4.1649 1.3334 0.7335 7 6 4.1161 1.5892 -1.3851 8 7 5.4210 1.4974 -1.5208 9 14 3.0424 1.9153 -2.8786 10 1 2.7757 3.3721 -2.9879 11 1 3.7411 1.4468 -4.1023 12 1 1.7569 1.1863 -2.7327 13 7 1.6665 2.0926 1.2586 14 6 0.4505 2.6590 1.3895 15 8 -0.3351 2.6301 0.4649 16 6 0.0696 3.3212 2.6727 17 8 0.8548 3.3490 3.5978 18 7 -1.1462 3.8881 2.8034 19 6 -1.4677 4.5924 3.9682 20 6 -2.2823 5.7161 3.9029 21 6 -2.5975 6.4133 5.0494 22 6 -2.1032 5.9981 6.2839 23 6 -1.2945 4.8699 6.3407 24 6 -0.9791 4.1690 5.1985 25 6 -0.9269 4.6592 7.7969 26 6 -1.9545 5.5618 8.5201 27 1 -2.8391 4.9907 8.8017 28 6 -1.3253 6.2235 9.7478 29 8 -2.2747 6.5439 7.5202 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 5.8259 1.5993 -2.3963 36 1 2.2942 2.1153 1.9977 37 1 -1.7981 3.8076 2.0897 38 1 -2.6697 6.0448 2.9499 39 1 -3.2310 7.2861 4.9903 40 1 -0.3489 3.2940 5.2579 41 1 -1.0551 3.6157 8.0840 42 1 0.0916 4.9935 7.9938 43 1 -0.4778 6.8343 9.4370 44 1 -2.0660 6.8529 10.2409 45 1 -0.9840 5.4540 10.4404 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348279543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:34 Heat of formation + Delta-G solvation = -97.506487 kcal Electronic energy + Delta-G solvation = -27964.405893 eV Core-core repulsion = 23946.461350 eV Total energy + Delta-G solvation = -4017.944543 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.39329 -41.76154 -40.16910 -38.48774 -37.22432 -35.57029 -34.41333 -34.14480 -33.15398 -31.98909 -30.41394 -29.58872 -27.68046 -26.21388 -24.62996 -23.57888 -22.68794 -22.62778 -21.79186 -21.32762 -20.11612 -18.79440 -18.65679 -18.28464 -17.72153 -17.35024 -17.26043 -16.76341 -16.31856 -16.00063 -15.61237 -15.33660 -15.04339 -14.80538 -14.77750 -14.42581 -14.14565 -13.99848 -13.90327 -13.81223 -13.71613 -13.51087 -13.44985 -12.97196 -12.94626 -12.79071 -12.58078 -12.40017 -12.30176 -12.04083 -11.87493 -11.83374 -11.69287 -11.26114 -10.91817 -10.86306 -10.62360 -9.92975 -9.92812 -8.82279 -8.40187 -6.48498 -0.07898 0.25257 0.54509 1.26099 1.35346 1.36096 1.45453 2.11138 2.22428 2.26661 2.64492 2.64733 3.00457 3.36858 3.51077 3.57778 3.85122 4.01367 4.12013 4.19065 4.25050 4.28281 4.39413 4.49440 4.53091 4.58527 4.64251 4.73160 4.76547 4.90725 4.95277 5.03878 5.09135 5.15978 5.19412 5.22617 5.23169 5.25202 5.32871 5.34938 5.51183 5.57343 5.61012 5.88582 6.10537 6.16147 6.52428 6.58692 6.74915 7.00367 7.20691 8.74782 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022581 B = 0.002403 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.708922 B =11648.689722 C =11961.271670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.125 4.125 3 C 0.240 3.760 4 H 0.044 0.956 5 C -0.534 4.534 6 H 0.051 0.949 7 C 0.032 3.968 8 N -0.929 5.929 9 Si 0.928 3.072 10 H -0.272 1.272 11 H -0.278 1.278 12 H -0.245 1.245 13 N -0.670 5.670 14 C 0.499 3.501 15 O -0.542 6.542 16 C 0.513 3.487 17 O -0.523 6.523 18 N -0.629 5.629 19 C 0.096 3.904 20 C -0.095 4.095 21 C -0.121 4.121 22 C 0.082 3.918 23 C -0.170 4.170 24 C -0.086 4.086 25 C -0.106 4.106 26 C 0.073 3.927 27 H 0.101 0.899 28 C -0.146 4.146 29 O -0.316 6.316 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.272 0.728 36 H 0.409 0.591 37 H 0.432 0.568 38 H 0.165 0.835 39 H 0.157 0.843 40 H 0.127 0.873 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.373 7.500 17.830 27.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.164 4.164 3 C 0.138 3.862 4 H 0.062 0.938 5 C -0.572 4.572 6 H 0.070 0.930 7 C -0.169 4.169 8 N -0.567 5.567 9 Si 0.752 3.248 10 H -0.198 1.198 11 H -0.204 1.204 12 H -0.168 1.168 13 N -0.319 5.319 14 C 0.279 3.721 15 O -0.422 6.422 16 C 0.295 3.705 17 O -0.399 6.399 18 N -0.276 5.276 19 C 0.003 3.997 20 C -0.115 4.115 21 C -0.140 4.140 22 C 0.036 3.964 23 C -0.172 4.172 24 C -0.106 4.106 25 C -0.143 4.143 26 C 0.018 3.982 27 H 0.119 0.881 28 C -0.203 4.203 29 O -0.231 6.231 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.244 0.756 37 H 0.272 0.728 38 H 0.183 0.817 39 H 0.174 0.826 40 H 0.145 0.855 41 H 0.125 0.875 42 H 0.112 0.888 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.228 7.677 17.720 27.252 hybrid contribution 0.469 -0.097 -0.885 1.007 sum -18.759 7.580 16.835 26.321 Atomic orbital electron populations 1.21813 0.95343 1.00872 1.01385 1.22011 0.95429 0.97249 1.01717 1.19159 0.93627 0.90760 0.82695 0.93802 1.21171 0.90165 1.51146 0.94687 0.93028 1.25684 0.95920 0.93603 1.01666 1.69990 1.11490 1.49716 1.25473 0.86017 0.80184 0.79507 0.79069 1.19774 1.20388 1.16801 1.46383 1.14279 1.53144 1.18140 1.19969 0.83633 0.80587 0.87927 1.90721 1.50740 1.59680 1.41024 1.20368 0.82446 0.79519 0.88194 1.90741 1.51137 1.57194 1.40813 1.42936 1.14584 1.51054 1.19051 1.17700 1.02061 0.94724 0.85204 1.20921 0.98691 0.92036 0.99830 1.20322 1.02803 1.02723 0.88130 1.19832 0.95741 0.93398 0.87408 1.20874 1.01118 0.98600 0.96564 1.20389 0.99971 1.00275 0.89931 1.21984 1.00783 1.02718 0.88846 1.23640 0.97852 0.87957 0.88732 0.88146 1.21915 1.01247 1.02172 0.95007 1.86835 1.85204 1.38401 1.12677 0.93715 0.93477 0.92058 0.92165 0.92223 0.91907 0.75565 0.72771 0.81727 0.82570 0.85520 0.87514 0.88781 0.92165 0.90701 0.88179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 8.53 71.98 0.61 -4.17 16 2 C -0.13 -5.03 5.59 30.59 0.17 -4.86 16 3 C 0.24 10.87 1.89 44.25 0.08 10.95 16 4 H 0.04 2.10 4.73 -2.39 -0.01 2.09 16 5 C -0.53 -28.57 9.05 25.60 0.23 -28.33 16 6 H 0.05 3.01 8.06 -2.91 -0.02 2.98 16 7 C 0.03 1.78 5.47 84.66 0.46 2.24 16 8 N -0.93 -54.98 13.96 21.45 0.30 -54.68 16 9 Si 0.93 42.77 26.99 68.60 1.85 44.62 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 12 H -0.24 -10.63 6.82 99.48 0.68 -9.95 16 13 N -0.67 -26.82 5.02 -447.53 -2.25 -29.07 16 14 C 0.50 18.03 6.49 87.23 0.57 18.60 16 15 O -0.54 -20.51 13.62 -3.29 -0.04 -20.55 16 16 C 0.51 16.26 7.73 87.23 0.67 16.93 16 17 O -0.52 -18.52 13.93 -3.34 -0.05 -18.57 16 18 N -0.63 -15.70 5.33 -304.68 -1.62 -17.32 16 19 C 0.10 2.31 6.30 38.21 0.24 2.55 16 20 C -0.10 -1.77 9.94 22.34 0.22 -1.55 16 21 C -0.12 -2.25 10.05 22.43 0.23 -2.02 16 22 C 0.08 1.79 7.04 22.69 0.16 1.95 16 23 C -0.17 -3.86 6.27 -19.53 -0.12 -3.99 16 24 C -0.09 -2.21 8.69 22.32 0.19 -2.02 16 25 C -0.11 -1.75 6.65 30.74 0.20 -1.55 16 26 C 0.07 1.05 4.26 31.18 0.13 1.18 16 27 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 28 C -0.15 -1.42 9.58 71.98 0.69 -0.73 16 29 O -0.32 -6.50 10.81 -96.08 -1.04 -7.54 16 30 H 0.04 1.63 7.89 -2.39 -0.02 1.61 16 31 H 0.05 1.62 5.63 -2.38 -0.01 1.61 16 32 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 36 H 0.41 16.01 8.06 -92.71 -0.75 15.26 16 37 H 0.43 8.95 8.30 -92.71 -0.77 8.18 16 38 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 39 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 40 H 0.13 3.65 6.25 -2.91 -0.02 3.63 16 41 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.09 1.52 7.92 -2.39 -0.02 1.50 16 43 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -66.62 370.62 1.40 -65.22 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: -0.50 Total: 32.70 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 4.75 Total: 5.19 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -3.57 Total: -101.07 kcal Atomic # 8 Polarization: -45.53 SS G_CDS: -1.13 Total: -46.66 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.85 Total: 44.62 kcal Total: -66.62 1.40 -65.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348279543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.282 kcal (2) G-P(sol) polarization free energy of solvation -66.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds