Wall clock time and date at job start Tue Mar 31 2020 17:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46881 * 2 1 4 4 H 1.08995 * 109.47308 * 304.99434 * 3 2 1 5 5 C 1.52998 * 109.47369 * 64.99857 * 3 2 1 6 6 C 1.53001 * 109.46947 * 184.99857 * 3 2 1 7 7 C 1.52999 * 109.47352 * 174.98297 * 6 3 2 8 8 H 1.09000 * 110.53108 * 52.61513 * 7 6 3 9 9 N 1.47309 * 110.60394 * 175.44903 * 7 6 3 10 10 C 1.34524 * 106.62257 * 118.52437 * 9 7 6 11 11 O 1.21538 * 123.77353 * 180.02562 * 10 9 7 12 12 N 1.33796 * 112.45719 * 359.97438 * 10 9 7 13 13 C 1.40255 * 124.17731 * 179.97438 * 12 10 9 14 14 C 1.38880 * 119.99734 * 353.99217 * 13 12 10 15 15 C 1.38006 * 120.00325 * 179.97438 * 14 13 12 16 16 C 1.38905 * 119.99811 * 0.28199 * 15 14 13 17 17 O 1.35767 * 120.00640 * 179.72517 * 16 15 14 18 18 C 1.34823 * 116.99861 * 5.36842 * 17 16 15 19 19 H 1.08001 * 119.99778 * 4.89247 * 18 17 16 20 20 C 1.38637 * 119.99622 * 184.88638 * 18 17 16 21 21 N 1.31567 * 120.00385 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99369 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46777 * 90.00789 * 22 20 18 24 24 H 1.48505 * 109.46850 * 210.00343 * 22 20 18 25 25 H 1.48494 * 109.47144 * 330.00350 * 22 20 18 26 26 C 1.38908 * 119.98934 * 359.43977 * 16 15 14 27 27 C 1.38013 * 119.99910 * 0.53613 * 26 16 15 28 28 C 1.34766 * 111.64351 * 0.23248 * 12 10 9 29 29 O 1.21233 * 127.15747 * 179.73343 * 28 12 10 30 30 H 1.09003 * 109.47028 * 60.00330 * 1 2 3 31 31 H 1.09006 * 109.46945 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47548 * 299.99938 * 1 2 3 33 33 H 1.09006 * 109.47474 * 239.99769 * 2 1 3 34 34 H 1.09003 * 109.47028 * 119.99669 * 2 1 3 35 35 H 1.09000 * 109.47298 * 185.06770 * 5 3 2 36 36 H 1.09000 * 109.46968 * 305.07744 * 5 3 2 37 37 H 1.09006 * 109.46725 * 65.06984 * 5 3 2 38 38 H 1.09009 * 109.47307 * 54.98452 * 6 3 2 39 39 H 1.08998 * 109.47278 * 294.98627 * 6 3 2 40 40 H 0.97000 * 126.68919 * 298.49270 * 9 7 6 41 41 H 1.07997 * 119.99894 * 359.97438 * 14 13 12 42 42 H 1.08001 * 119.99980 * 180.02562 * 15 14 13 43 43 H 0.97001 * 119.99917 * 179.97438 * 21 20 18 44 44 H 1.08007 * 120.00256 * 180.25603 * 26 16 15 45 45 H 1.07991 * 119.99855 * 179.74514 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6351 2.1266 1.3073 6 6 3.5647 1.4444 -0.1257 7 6 4.0644 2.8850 -0.2515 8 1 3.6721 3.4979 0.5600 9 7 5.5369 2.9236 -0.2651 10 6 5.8972 3.4510 -1.4491 11 8 7.0513 3.6249 -1.7882 12 7 4.8430 3.7617 -2.2121 13 6 4.9363 4.3260 -3.4927 14 6 6.1730 4.7116 -3.9932 15 6 6.2651 5.2664 -5.2535 16 6 5.1199 5.4445 -6.0191 17 8 5.2095 5.9954 -7.2568 18 6 6.4480 6.2447 -7.7276 19 1 7.3136 5.9349 -7.1607 20 6 6.6104 6.8984 -8.9393 21 7 5.5559 7.2760 -9.6296 22 14 8.3265 7.2430 -9.5919 23 1 8.7755 6.1025 -10.4303 24 1 8.3050 8.4814 -10.4112 25 1 9.2630 7.4192 -8.4530 26 6 3.8837 5.0535 -5.5207 27 6 3.7920 4.4983 -4.2606 28 6 3.6803 3.4707 -1.5959 29 8 2.5602 3.6409 -2.0274 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.9191 3.1783 1.2701 36 1 0.5563 2.0459 1.4407 37 1 2.1417 1.6428 2.1425 38 1 3.8571 0.8798 -1.0112 39 1 4.0029 0.9839 0.7598 40 1 6.1310 2.6271 0.4420 41 1 7.0629 4.5773 -3.3961 42 1 7.2269 5.5659 -5.6427 43 1 5.6696 7.7337 -10.4772 44 1 2.9936 5.1881 -6.1176 45 1 2.8304 4.1980 -3.8715 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349386710.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:21 Heat of formation + Delta-G solvation = -46.442560 kcal Electronic energy + Delta-G solvation = -28303.728050 eV Core-core repulsion = 24287.997805 eV Total energy + Delta-G solvation = -4015.730245 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.75327 -39.03962 -38.83762 -37.69198 -36.53103 -36.14101 -34.15584 -32.25027 -31.36975 -30.23471 -28.61749 -28.36854 -26.10261 -25.40837 -23.79436 -23.30026 -22.20353 -21.12313 -20.62855 -19.91364 -18.41600 -17.82555 -17.30762 -16.94323 -16.71894 -15.90443 -15.79489 -15.38995 -15.09719 -14.60400 -14.35757 -14.27771 -14.16371 -13.89628 -13.69007 -13.58836 -13.37481 -13.00365 -12.83669 -12.64263 -12.30950 -12.17454 -12.05344 -11.87098 -11.71024 -11.67464 -11.18067 -11.09768 -11.05016 -10.92253 -10.84169 -10.47365 -10.30234 -10.10226 -9.84923 -9.66504 -9.23696 -8.79206 -8.26504 -7.07475 -6.48199 -4.05576 1.47038 2.04723 2.16984 2.18348 2.94708 3.08690 3.13948 3.18590 3.20703 3.73655 3.95442 4.20988 4.35373 4.52854 4.54465 4.62899 4.84070 4.98554 5.08184 5.11159 5.20629 5.23103 5.24835 5.30637 5.39400 5.50698 5.52171 5.64252 5.71483 5.74108 5.74892 5.78381 5.82703 6.07149 6.12146 6.14846 6.22529 6.57838 6.67849 6.78709 6.87518 6.96981 7.22298 7.33255 7.34808 7.47781 7.71144 7.96708 8.11260 8.97194 9.65336 10.69333 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022385 B = 0.002516 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.519000 B =11126.079287 C =12020.151955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.103 4.103 4 H 0.093 0.907 5 C -0.151 4.151 6 C -0.111 4.111 7 C 0.092 3.908 8 H 0.128 0.872 9 N -0.727 5.727 10 C 0.700 3.300 11 O -0.531 6.531 12 N -0.499 5.499 13 C 0.014 3.986 14 C -0.078 4.078 15 C -0.220 4.220 16 C 0.152 3.848 17 O -0.171 6.171 18 C -0.392 4.392 19 H 0.094 0.906 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.266 1.266 26 C -0.178 4.178 27 C -0.083 4.083 28 C 0.518 3.482 29 O -0.456 6.456 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.439 0.561 41 H 0.148 0.852 42 H 0.135 0.865 43 H 0.271 0.729 44 H 0.125 0.875 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.534 -12.336 22.671 26.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.122 4.122 4 H 0.111 0.889 5 C -0.208 4.208 6 C -0.150 4.150 7 C -0.017 4.017 8 H 0.146 0.854 9 N -0.392 5.392 10 C 0.401 3.599 11 O -0.404 6.404 12 N -0.236 5.236 13 C -0.075 4.075 14 C -0.097 4.097 15 C -0.240 4.240 16 C 0.097 3.903 17 O -0.074 6.074 18 C -0.468 4.468 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.494 5.494 22 Si 0.766 3.234 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.198 4.198 27 C -0.103 4.103 28 C 0.305 3.695 29 O -0.326 6.326 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.283 0.717 41 H 0.165 0.835 42 H 0.152 0.848 43 H 0.081 0.919 44 H 0.143 0.857 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.747 -11.907 21.760 25.462 hybrid contribution 1.206 0.081 0.060 1.210 sum -4.541 -11.826 21.821 25.231 Atomic orbital electron populations 1.21827 0.95654 1.01525 1.02197 1.21522 0.96213 0.95748 1.01935 1.21303 0.93536 0.97237 1.00090 0.88917 1.21946 1.02004 1.00254 0.96594 1.21834 0.96754 0.92490 1.03876 1.22216 0.81636 1.00176 0.97625 0.85448 1.45552 1.07096 1.67941 1.18630 1.15852 0.84459 0.78557 0.81008 1.90897 1.17560 1.57858 1.74130 1.43466 1.08038 1.55627 1.16474 1.17293 0.95990 1.10638 0.83630 1.21298 0.96501 0.96156 0.95782 1.21097 0.99437 1.08259 0.95244 1.19522 0.93350 0.91502 0.85912 1.83991 1.31440 1.67593 1.24366 1.21370 0.81886 1.38840 1.04671 0.88880 1.25314 0.99746 0.95866 0.95560 1.70044 1.29255 1.36287 1.13806 0.85696 0.80166 0.78335 0.79178 1.19799 1.20218 1.19079 1.20060 0.96185 1.07211 0.96379 1.20896 0.97298 0.98854 0.93258 1.20770 0.84328 0.77682 0.86699 1.90693 1.21123 1.50609 1.70214 0.92434 0.92903 0.92456 0.91925 0.92074 0.92620 0.91964 0.92690 0.90657 0.89701 0.71670 0.83520 0.84776 0.91913 0.85657 0.84086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.67 37.16 0.36 -0.62 16 2 C -0.12 -0.74 5.40 -26.73 -0.14 -0.88 16 3 C -0.10 -0.71 2.32 -90.62 -0.21 -0.92 16 4 H 0.09 0.87 6.23 -51.93 -0.32 0.54 16 5 C -0.15 -0.85 8.71 37.16 0.32 -0.53 16 6 C -0.11 -0.74 4.53 -26.73 -0.12 -0.86 16 7 C 0.09 0.77 3.58 -68.20 -0.24 0.52 16 8 H 0.13 0.78 6.44 -51.93 -0.33 0.45 16 9 N -0.73 -6.52 6.24 -59.19 -0.37 -6.89 16 10 C 0.70 10.08 8.54 -88.02 -0.75 9.33 16 11 O -0.53 -9.31 14.65 5.33 0.08 -9.23 16 12 N -0.50 -7.86 2.83 -64.30 -0.18 -8.04 16 13 C 0.01 0.27 6.56 -83.53 -0.55 -0.28 16 14 C -0.08 -1.61 9.25 -39.43 -0.36 -1.97 16 15 C -0.22 -5.01 9.13 -39.42 -0.36 -5.37 16 16 C 0.15 3.73 6.65 -39.09 -0.26 3.47 16 17 O -0.17 -4.89 9.76 0.02 0.00 -4.89 16 18 C -0.39 -10.96 9.45 30.88 0.29 -10.67 16 19 H 0.09 2.42 5.27 -52.49 -0.28 2.14 16 20 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 21 N -0.86 -25.14 13.67 55.48 0.76 -24.39 16 22 Si 0.94 20.58 29.55 -169.99 -5.02 15.55 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 C -0.18 -3.89 9.99 -39.42 -0.39 -4.28 16 27 C -0.08 -1.63 9.31 -39.43 -0.37 -2.00 16 28 C 0.52 6.81 7.35 -10.55 -0.08 6.74 16 29 O -0.46 -6.77 13.35 5.60 0.07 -6.69 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.33 6.46 -51.93 -0.34 -0.01 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.05 0.32 6.68 -51.93 -0.35 -0.03 16 36 H 0.06 0.35 6.34 -51.93 -0.33 0.02 16 37 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.07 0.60 8.13 -51.92 -0.42 0.17 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.44 2.57 8.96 -40.82 -0.37 2.21 16 41 H 0.15 2.96 5.17 -52.49 -0.27 2.69 16 42 H 0.13 3.02 5.69 -52.49 -0.30 2.72 16 43 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.13 2.59 8.06 -52.48 -0.42 2.17 16 45 H 0.14 2.57 5.36 -52.49 -0.28 2.29 16 LS Contribution 363.28 15.07 5.47 5.47 Total: -1.00 -32.88 363.28 -7.83 -40.71 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.68 Total: 5.72 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -2.96 Total: -7.32 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.21 Total: -39.31 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.15 Total: -20.82 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.88 -7.83 -40.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349386710.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.732 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds