Wall clock time and date at job start Tue Mar 31 2020 17:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46881 * 2 1 4 4 H 1.08995 * 109.47308 * 304.99434 * 3 2 1 5 5 C 1.52998 * 109.47369 * 64.99857 * 3 2 1 6 6 C 1.53001 * 109.46947 * 184.99857 * 3 2 1 7 7 C 1.52999 * 109.47352 * 174.98297 * 6 3 2 8 8 H 1.09000 * 110.53108 * 52.61513 * 7 6 3 9 9 N 1.47309 * 110.60394 * 175.44903 * 7 6 3 10 10 C 1.34524 * 106.62257 * 118.52437 * 9 7 6 11 11 O 1.21538 * 123.77353 * 180.02562 * 10 9 7 12 12 N 1.33796 * 112.45719 * 359.97438 * 10 9 7 13 13 C 1.40255 * 124.17731 * 179.97438 * 12 10 9 14 14 C 1.38880 * 119.99734 * 353.99217 * 13 12 10 15 15 C 1.38006 * 120.00325 * 179.97438 * 14 13 12 16 16 C 1.38905 * 119.99811 * 0.28199 * 15 14 13 17 17 O 1.35767 * 120.00640 * 179.72517 * 16 15 14 18 18 C 1.34823 * 116.99861 * 5.36842 * 17 16 15 19 19 H 1.08001 * 119.99778 * 4.89247 * 18 17 16 20 20 C 1.38637 * 119.99622 * 184.88638 * 18 17 16 21 21 N 1.31567 * 120.00385 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99369 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46777 * 90.00789 * 22 20 18 24 24 H 1.48505 * 109.46850 * 210.00343 * 22 20 18 25 25 H 1.48494 * 109.47144 * 330.00350 * 22 20 18 26 26 C 1.38908 * 119.98934 * 359.43977 * 16 15 14 27 27 C 1.38013 * 119.99910 * 0.53613 * 26 16 15 28 28 C 1.34766 * 111.64351 * 0.23248 * 12 10 9 29 29 O 1.21233 * 127.15747 * 179.73343 * 28 12 10 30 30 H 1.09003 * 109.47028 * 60.00330 * 1 2 3 31 31 H 1.09006 * 109.46945 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47548 * 299.99938 * 1 2 3 33 33 H 1.09006 * 109.47474 * 239.99769 * 2 1 3 34 34 H 1.09003 * 109.47028 * 119.99669 * 2 1 3 35 35 H 1.09000 * 109.47298 * 185.06770 * 5 3 2 36 36 H 1.09000 * 109.46968 * 305.07744 * 5 3 2 37 37 H 1.09006 * 109.46725 * 65.06984 * 5 3 2 38 38 H 1.09009 * 109.47307 * 54.98452 * 6 3 2 39 39 H 1.08998 * 109.47278 * 294.98627 * 6 3 2 40 40 H 0.97000 * 126.68919 * 298.49270 * 9 7 6 41 41 H 1.07997 * 119.99894 * 359.97438 * 14 13 12 42 42 H 1.08001 * 119.99980 * 180.02562 * 15 14 13 43 43 H 0.97001 * 119.99917 * 179.97438 * 21 20 18 44 44 H 1.08007 * 120.00256 * 180.25603 * 26 16 15 45 45 H 1.07991 * 119.99855 * 179.74514 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6351 2.1266 1.3073 6 6 3.5647 1.4444 -0.1257 7 6 4.0644 2.8850 -0.2515 8 1 3.6721 3.4979 0.5600 9 7 5.5369 2.9236 -0.2651 10 6 5.8972 3.4510 -1.4491 11 8 7.0513 3.6249 -1.7882 12 7 4.8430 3.7617 -2.2121 13 6 4.9363 4.3260 -3.4927 14 6 6.1730 4.7116 -3.9932 15 6 6.2651 5.2664 -5.2535 16 6 5.1199 5.4445 -6.0191 17 8 5.2095 5.9954 -7.2568 18 6 6.4480 6.2447 -7.7276 19 1 7.3136 5.9349 -7.1607 20 6 6.6104 6.8984 -8.9393 21 7 5.5559 7.2760 -9.6296 22 14 8.3265 7.2430 -9.5919 23 1 8.7755 6.1025 -10.4303 24 1 8.3050 8.4814 -10.4112 25 1 9.2630 7.4192 -8.4530 26 6 3.8837 5.0535 -5.5207 27 6 3.7920 4.4983 -4.2606 28 6 3.6803 3.4707 -1.5959 29 8 2.5602 3.6409 -2.0274 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.9191 3.1783 1.2701 36 1 0.5563 2.0459 1.4407 37 1 2.1417 1.6428 2.1425 38 1 3.8571 0.8798 -1.0112 39 1 4.0029 0.9839 0.7598 40 1 6.1310 2.6271 0.4420 41 1 7.0629 4.5773 -3.3961 42 1 7.2269 5.5659 -5.6427 43 1 5.6696 7.7337 -10.4772 44 1 2.9936 5.1881 -6.1176 45 1 2.8304 4.1980 -3.8715 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349386710.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:20 Heat of formation + Delta-G solvation = -67.779956 kcal Electronic energy + Delta-G solvation = -28304.653309 eV Core-core repulsion = 24287.997805 eV Total energy + Delta-G solvation = -4016.655504 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.87878 -40.80529 -39.97439 -38.80903 -37.85931 -37.21129 -35.41810 -34.22252 -32.10554 -31.88707 -30.12796 -29.05510 -27.49548 -26.70284 -24.96359 -24.53493 -23.51160 -22.36843 -21.80870 -20.66455 -20.03437 -19.26422 -18.76241 -18.31699 -17.99568 -17.12945 -16.67872 -16.40208 -16.19604 -16.09968 -15.85199 -15.60616 -15.40291 -15.20495 -14.94760 -14.70685 -14.53575 -14.34864 -13.98721 -13.76259 -13.57152 -13.56488 -13.32494 -12.79525 -12.75666 -12.73477 -12.59702 -12.22366 -12.13220 -11.90158 -11.69169 -11.60172 -11.58429 -11.36477 -11.19821 -10.77793 -10.74732 -10.49057 -9.99851 -8.84828 -8.50364 -6.17788 0.25077 0.39668 0.55131 1.04367 1.35399 1.43391 1.52859 1.90805 2.07276 2.16281 2.75315 2.79213 3.09478 3.40422 3.54740 3.66415 3.94406 4.00467 4.03856 4.08272 4.11147 4.23848 4.31506 4.41204 4.50714 4.62478 4.71784 4.75907 4.85528 4.92463 4.96812 4.99626 5.03506 5.14896 5.21021 5.25079 5.28040 5.28382 5.32355 5.36484 5.55813 5.60957 5.63081 5.81168 5.94712 5.96756 6.04841 6.31889 6.93615 7.02070 7.69621 8.72134 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022385 B = 0.002516 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.519000 B =11126.079287 C =12020.151955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.102 4.102 4 H 0.064 0.936 5 C -0.150 4.150 6 C -0.106 4.106 7 C 0.109 3.891 8 H 0.165 0.835 9 N -0.694 5.694 10 C 0.695 3.305 11 O -0.566 6.566 12 N -0.514 5.514 13 C 0.040 3.960 14 C -0.083 4.083 15 C -0.221 4.221 16 C 0.119 3.881 17 O -0.220 6.220 18 C -0.416 4.416 19 H 0.102 0.898 20 C -0.019 4.019 21 N -0.916 5.916 22 Si 1.018 2.982 23 H -0.262 1.262 24 H -0.269 1.269 25 H -0.254 1.254 26 C -0.179 4.179 27 C -0.080 4.080 28 C 0.510 3.490 29 O -0.474 6.474 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.122 0.878 40 H 0.458 0.542 41 H 0.157 0.843 42 H 0.130 0.870 43 H 0.275 0.725 44 H 0.130 0.870 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.922 -13.979 26.598 30.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.121 4.121 4 H 0.082 0.918 5 C -0.207 4.207 6 C -0.144 4.144 7 C 0.001 3.999 8 H 0.182 0.818 9 N -0.360 5.360 10 C 0.396 3.604 11 O -0.443 6.443 12 N -0.252 5.252 13 C -0.051 4.051 14 C -0.102 4.102 15 C -0.241 4.241 16 C 0.068 3.932 17 O -0.126 6.126 18 C -0.492 4.492 19 H 0.120 0.880 20 C -0.217 4.217 21 N -0.553 5.553 22 Si 0.837 3.163 23 H -0.187 1.187 24 H -0.194 1.194 25 H -0.177 1.177 26 C -0.199 4.199 27 C -0.099 4.099 28 C 0.300 3.700 29 O -0.344 6.344 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.140 0.860 40 H 0.307 0.693 41 H 0.174 0.826 42 H 0.148 0.852 43 H 0.084 0.916 44 H 0.148 0.852 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.164 -13.610 25.808 29.630 hybrid contribution 0.814 0.396 -0.798 1.207 sum -4.350 -13.214 25.010 28.619 Atomic orbital electron populations 1.21839 0.95952 1.01725 1.01837 1.21515 0.95976 0.95466 1.02325 1.21250 0.93534 0.97374 0.99915 0.91761 1.21955 1.02173 1.00333 0.96286 1.21886 0.96622 0.90849 1.05063 1.22405 0.80780 1.01625 0.95112 0.81844 1.45398 1.07762 1.65871 1.16939 1.16003 0.83538 0.78788 0.82106 1.90871 1.18767 1.59517 1.75100 1.43678 1.09891 1.56188 1.15483 1.17420 0.95135 1.07510 0.85035 1.21405 0.97611 0.96155 0.95038 1.21157 0.98797 1.08201 0.95940 1.19929 0.94935 0.92655 0.85729 1.83962 1.31934 1.70288 1.26399 1.21839 0.82285 1.39547 1.05523 0.88038 1.26589 1.04480 0.95237 0.95417 1.70180 1.32008 1.38397 1.14728 0.84592 0.74429 0.78505 0.78736 1.18723 1.19398 1.17730 1.20284 0.95604 1.06731 0.97260 1.21063 0.98318 0.98198 0.92343 1.21705 0.83344 0.76850 0.88137 1.90687 1.21679 1.50995 1.71050 0.93966 0.92461 0.91671 0.92870 0.90299 0.92479 0.92273 0.90635 0.91878 0.86012 0.69316 0.82618 0.85203 0.91640 0.85196 0.82317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.67 71.98 0.70 -1.02 16 2 C -0.12 -1.15 5.40 30.59 0.17 -0.99 16 3 C -0.10 -1.09 2.32 -10.79 -0.03 -1.11 16 4 H 0.06 1.09 6.23 -2.39 -0.01 1.07 16 5 C -0.15 -1.09 8.71 71.98 0.63 -0.46 16 6 C -0.11 -0.95 4.53 30.59 0.14 -0.81 16 7 C 0.11 1.33 3.58 44.37 0.16 1.49 16 8 H 0.16 1.08 6.44 -2.39 -0.02 1.06 16 9 N -0.69 -9.51 6.24 -459.61 -2.87 -12.38 16 10 C 0.69 18.24 8.54 179.44 1.53 19.77 16 11 O -0.57 -18.90 14.65 -3.83 -0.06 -18.95 16 12 N -0.51 -15.19 2.83 -594.61 -1.68 -16.87 16 13 C 0.04 1.51 6.56 38.10 0.25 1.76 16 14 C -0.08 -3.41 9.25 22.37 0.21 -3.21 16 15 C -0.22 -10.37 9.13 22.37 0.20 -10.16 16 16 C 0.12 6.13 6.65 22.59 0.15 6.28 16 17 O -0.22 -13.36 9.76 -22.86 -0.22 -13.58 16 18 C -0.42 -24.45 9.45 67.92 0.64 -23.81 16 19 H 0.10 5.51 5.27 -2.91 -0.02 5.50 16 20 C -0.02 -1.08 5.49 84.83 0.47 -0.62 16 21 N -0.92 -56.21 13.67 21.61 0.30 -55.91 16 22 Si 1.02 43.20 29.55 68.60 2.03 45.22 16 23 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 25 H -0.25 -10.07 7.11 99.48 0.71 -9.37 16 26 C -0.18 -8.04 9.99 22.38 0.22 -7.82 16 27 C -0.08 -3.10 9.31 22.37 0.21 -2.89 16 28 C 0.51 12.12 7.35 87.94 0.65 12.76 16 29 O -0.47 -13.20 13.35 -2.89 -0.04 -13.24 16 30 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.06 0.60 6.46 -2.39 -0.02 0.59 16 33 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.06 0.40 6.68 -2.39 -0.02 0.39 16 36 H 0.06 0.48 6.34 -2.39 -0.02 0.47 16 37 H 0.07 0.27 8.14 -2.38 -0.02 0.25 16 38 H 0.06 0.78 8.13 -2.38 -0.02 0.76 16 39 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.46 3.09 8.96 -92.71 -0.83 2.26 16 41 H 0.16 6.23 5.17 -2.91 -0.02 6.22 16 42 H 0.13 6.10 5.69 -2.91 -0.02 6.08 16 43 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 44 H 0.13 5.60 8.06 -2.91 -0.02 5.57 16 45 H 0.16 5.64 5.36 -2.92 -0.02 5.63 16 Total: -1.00 -76.99 363.28 3.96 -73.03 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.22 Total: 23.51 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 6.29 Total: -10.83 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -4.26 Total: -85.16 kcal Atomic # 8 Polarization: -45.45 SS G_CDS: -0.32 Total: -45.77 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -76.99 3.96 -73.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349386710.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.247 kcal (2) G-P(sol) polarization free energy of solvation -76.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds