Wall clock time and date at job start Tue Mar 31 2020 17:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.47019 * 2 1 4 4 H 1.08994 * 109.47263 * 54.99364 * 3 2 1 5 5 C 1.53001 * 109.47098 * 294.99692 * 3 2 1 6 6 C 1.52997 * 109.47121 * 175.00088 * 3 2 1 7 7 C 1.53000 * 109.46803 * 294.56023 * 6 3 2 8 8 H 1.09001 * 110.53869 * 54.26746 * 7 6 3 9 9 N 1.47314 * 110.60209 * 291.43238 * 7 6 3 10 10 C 1.34865 * 106.43838 * 241.52747 * 9 7 6 11 11 O 1.21544 * 123.72465 * 179.97438 * 10 9 7 12 12 N 1.33791 * 112.50128 * 359.85907 * 10 9 7 13 13 C 1.40260 * 124.17251 * 180.02562 * 12 10 9 14 14 C 1.38879 * 120.00021 * 353.66937 * 13 12 10 15 15 C 1.38003 * 120.00143 * 179.76978 * 14 13 12 16 16 C 1.38910 * 119.99916 * 0.50319 * 15 14 13 17 17 O 1.35768 * 120.00158 * 179.72572 * 16 15 14 18 18 C 1.34820 * 116.99650 * 185.41163 * 17 16 15 19 19 H 1.08002 * 119.99890 * 4.84744 * 18 17 16 20 20 C 1.38637 * 120.00185 * 184.85210 * 18 17 16 21 21 N 1.31563 * 120.00373 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99586 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47040 * 90.00607 * 22 20 18 24 24 H 1.48500 * 109.46925 * 210.00208 * 22 20 18 25 25 H 1.48501 * 109.47421 * 330.00171 * 22 20 18 26 26 C 1.38904 * 119.99038 * 359.74654 * 16 15 14 27 27 C 1.38009 * 119.99973 * 0.02562 * 26 16 15 28 28 C 1.34766 * 111.64611 * 0.09078 * 12 10 9 29 29 O 1.21237 * 127.15351 * 179.97438 * 28 12 10 30 30 H 1.08996 * 109.46774 * 60.00391 * 1 2 3 31 31 H 1.09000 * 109.46668 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47233 * 300.00259 * 1 2 3 33 33 H 1.09001 * 109.47233 * 239.99741 * 2 1 3 34 34 H 1.08996 * 109.46774 * 119.99609 * 2 1 3 35 35 H 1.08999 * 109.47162 * 65.23353 * 5 3 2 36 36 H 1.08996 * 109.47698 * 185.23154 * 5 3 2 37 37 H 1.09005 * 109.47169 * 305.23451 * 5 3 2 38 38 H 1.08995 * 109.47087 * 54.55929 * 6 3 2 39 39 H 1.09003 * 109.47345 * 174.55749 * 6 3 2 40 40 H 0.96995 * 126.68464 * 61.44401 * 9 7 6 41 41 H 1.08000 * 119.99447 * 359.97438 * 14 13 12 42 42 H 1.08003 * 119.99907 * 180.23027 * 15 14 13 43 43 H 0.96997 * 120.00301 * 179.97438 * 21 20 18 44 44 H 1.08002 * 119.99981 * 179.97438 * 26 16 15 45 45 H 1.07993 * 120.00162 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4443 0.1257 7 6 3.9646 0.8837 1.4920 8 1 3.5168 -0.0977 1.6486 9 7 3.5714 1.8103 2.5677 10 6 4.7109 2.1844 3.1846 11 8 4.7478 2.9521 4.1261 12 7 5.7953 1.6146 2.6465 13 6 7.1054 1.8318 3.0979 14 6 7.3530 2.7823 4.0797 15 6 8.6414 2.9927 4.5272 16 6 9.6920 2.2610 3.9882 17 8 10.9602 2.4719 4.4245 18 6 11.9456 1.8116 3.7837 19 1 11.7176 1.2123 2.9146 20 6 13.2515 1.9017 4.2404 21 7 14.2132 1.2577 3.6148 22 14 13.6458 2.9387 5.7433 23 1 13.5393 2.1007 6.9647 24 1 15.0268 3.4723 5.6280 25 1 12.6848 4.0674 5.8319 26 6 9.4448 1.3140 3.0025 27 6 8.1557 1.1005 2.5585 28 6 5.4734 0.8074 1.6165 29 8 6.2327 0.1561 0.9316 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5494 2.2083 -1.3536 36 1 2.0768 3.1222 -1.3484 37 1 1.9915 1.5361 -2.1517 38 1 3.9950 0.8248 -0.6612 39 1 3.9362 2.4645 0.0287 40 1 2.6705 2.0951 2.7867 41 1 6.5367 3.3545 4.4953 42 1 8.8334 3.7293 5.2934 43 1 15.1269 1.3211 3.9341 44 1 10.2616 0.7454 2.5831 45 1 7.9635 0.3645 1.7919 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349386712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:26 Heat of formation + Delta-G solvation = -45.258202 kcal Electronic energy + Delta-G solvation = -28149.396856 eV Core-core repulsion = 24133.717969 eV Total energy + Delta-G solvation = -4015.678888 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.78247 -39.20407 -38.78698 -38.04839 -36.70541 -36.06980 -34.14646 -32.38046 -31.23273 -30.35528 -29.30181 -28.68837 -25.74113 -25.24888 -23.95015 -23.18411 -22.56316 -21.30599 -20.56324 -20.01844 -18.25474 -18.00066 -17.38238 -17.17501 -16.50994 -16.23823 -15.79204 -15.43723 -15.09890 -14.81283 -14.70896 -14.19980 -14.04460 -13.93094 -13.84520 -13.83765 -13.39233 -12.94889 -12.62322 -12.61449 -12.51178 -12.35022 -12.29977 -12.08959 -12.00952 -11.91352 -11.27282 -11.08847 -11.06630 -10.98103 -10.92969 -10.42750 -10.28554 -10.16393 -9.83839 -9.71942 -9.33983 -8.84840 -8.35895 -7.21395 -6.45014 -4.10682 1.42170 1.94143 2.06559 2.12636 2.90562 3.07939 3.22099 3.25576 3.39937 3.70624 4.14545 4.21679 4.23492 4.40537 4.44129 4.45114 4.71632 4.84236 4.98120 5.02977 5.04940 5.05759 5.13488 5.21623 5.22878 5.41579 5.44076 5.56842 5.59553 5.60484 5.61218 5.67459 5.73036 5.89334 5.91039 6.05458 6.14149 6.45570 6.55272 6.77964 6.78774 6.89049 7.19452 7.28026 7.32913 7.54384 7.74375 7.97476 8.06070 8.89574 9.50452 10.62144 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029054 B = 0.002368 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.480638 B =11819.634041 C =12421.871269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.090 4.090 4 H 0.072 0.928 5 C -0.148 4.148 6 C -0.116 4.116 7 C 0.094 3.906 8 H 0.129 0.871 9 N -0.725 5.725 10 C 0.701 3.299 11 O -0.532 6.532 12 N -0.500 5.500 13 C 0.024 3.976 14 C -0.084 4.084 15 C -0.178 4.178 16 C 0.158 3.842 17 O -0.211 6.211 18 C -0.390 4.390 19 H 0.108 0.892 20 C 0.064 3.936 21 N -0.875 5.875 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.258 1.258 26 C -0.207 4.207 27 C -0.082 4.082 28 C 0.517 3.483 29 O -0.456 6.456 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.439 0.561 41 H 0.153 0.847 42 H 0.125 0.875 43 H 0.280 0.720 44 H 0.141 0.859 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.326 -1.051 -7.550 28.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.108 4.108 4 H 0.090 0.910 5 C -0.206 4.206 6 C -0.155 4.155 7 C -0.015 4.015 8 H 0.147 0.853 9 N -0.391 5.391 10 C 0.403 3.597 11 O -0.405 6.405 12 N -0.238 5.238 13 C -0.065 4.065 14 C -0.103 4.103 15 C -0.198 4.198 16 C 0.104 3.896 17 O -0.115 6.115 18 C -0.465 4.465 19 H 0.125 0.875 20 C -0.140 4.140 21 N -0.513 5.513 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.182 1.182 26 C -0.227 4.227 27 C -0.102 4.102 28 C 0.304 3.696 29 O -0.326 6.326 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.283 0.717 41 H 0.170 0.830 42 H 0.143 0.857 43 H 0.090 0.910 44 H 0.159 0.841 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -26.444 -0.908 -7.237 27.431 hybrid contribution -0.037 0.297 0.578 0.651 sum -26.481 -0.611 -6.659 27.312 Atomic orbital electron populations 1.21814 0.95656 1.01726 1.01934 1.21709 0.96190 0.95995 1.02484 1.21149 0.93813 0.96736 0.99116 0.90954 1.21858 1.01504 1.00507 0.96699 1.21911 0.96892 1.02842 0.93854 1.22185 0.92402 0.96554 0.90372 0.85342 1.45610 1.08445 1.50106 1.34900 1.15909 0.80735 0.80752 0.82318 1.90886 1.84714 1.37000 1.27914 1.43472 1.07347 1.42022 1.30928 1.17354 0.79926 1.05030 1.04233 1.21191 0.97367 0.96430 0.95339 1.20126 0.90358 1.04130 1.05157 1.19269 0.85143 0.92738 0.92406 1.83590 1.11805 1.61664 1.54477 1.20794 0.85260 1.28848 1.11627 0.87485 1.24486 0.94064 0.96779 0.98668 1.69648 1.01085 1.40400 1.40134 0.86172 0.77831 0.81122 0.81758 1.19830 1.20721 1.18238 1.21160 0.96736 1.02721 1.02040 1.21073 0.91053 0.98573 0.99503 1.20820 0.90682 0.78723 0.79340 1.90737 1.56967 1.39838 1.45035 0.92453 0.92746 0.92770 0.91405 0.91787 0.92210 0.92500 0.92340 0.88940 0.90319 0.71661 0.82976 0.85661 0.90950 0.84108 0.84232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.67 37.16 0.36 -0.26 16 2 C -0.13 -0.54 5.29 -26.73 -0.14 -0.68 16 3 C -0.09 -0.41 2.35 -90.62 -0.21 -0.62 16 4 H 0.07 0.29 7.36 -51.93 -0.38 -0.09 16 5 C -0.15 -0.68 8.82 37.16 0.33 -0.35 16 6 C -0.12 -0.74 4.43 -26.73 -0.12 -0.86 16 7 C 0.09 0.74 3.50 -68.20 -0.24 0.50 16 8 H 0.13 0.74 6.32 -51.93 -0.33 0.42 16 9 N -0.72 -6.09 6.02 -59.09 -0.36 -6.45 16 10 C 0.70 9.53 8.54 -87.72 -0.75 8.78 16 11 O -0.53 -8.74 14.66 5.33 0.08 -8.67 16 12 N -0.50 -7.60 2.83 -64.21 -0.18 -7.78 16 13 C 0.02 0.45 6.56 -83.52 -0.55 -0.10 16 14 C -0.08 -1.60 9.25 -39.43 -0.36 -1.97 16 15 C -0.18 -3.66 9.99 -39.42 -0.39 -4.06 16 16 C 0.16 3.68 6.65 -39.09 -0.26 3.42 16 17 O -0.21 -5.56 8.58 0.02 0.00 -5.56 16 18 C -0.39 -10.95 9.91 30.88 0.31 -10.64 16 19 H 0.11 3.07 5.50 -52.49 -0.29 2.78 16 20 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 21 N -0.88 -25.16 13.96 55.48 0.77 -24.39 16 22 Si 0.91 21.61 28.62 -169.99 -4.86 16.75 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 26 C -0.21 -4.58 9.13 -39.42 -0.36 -4.94 16 27 C -0.08 -1.63 9.31 -39.43 -0.37 -1.99 16 28 C 0.52 6.74 7.52 -10.55 -0.08 6.66 16 29 O -0.46 -7.04 15.06 5.59 0.08 -6.95 16 30 H 0.06 0.22 6.68 -51.93 -0.35 -0.12 16 31 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.26 6.28 -51.93 -0.33 -0.07 16 35 H 0.06 0.24 6.83 -51.93 -0.35 -0.11 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.44 2.46 8.39 -40.82 -0.34 2.11 16 41 H 0.15 2.80 5.18 -52.49 -0.27 2.53 16 42 H 0.13 2.38 8.06 -52.48 -0.42 1.95 16 43 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.14 3.23 5.69 -52.49 -0.30 2.93 16 45 H 0.14 2.64 5.36 -52.49 -0.28 2.36 16 LS Contribution 364.40 15.07 5.49 5.49 Total: -1.00 -31.89 364.40 -7.65 -39.53 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.74 Total: 3.43 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -2.94 Total: -5.40 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.24 Total: -38.62 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: 0.16 Total: -21.18 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.86 Total: 16.75 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.89 -7.65 -39.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349386712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.724 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds