Wall clock time and date at job start Tue Mar 31 2020 17:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.47019 * 2 1 4 4 H 1.08994 * 109.47263 * 54.99364 * 3 2 1 5 5 C 1.53001 * 109.47098 * 294.99692 * 3 2 1 6 6 C 1.52997 * 109.47121 * 175.00088 * 3 2 1 7 7 C 1.53000 * 109.46803 * 294.56023 * 6 3 2 8 8 H 1.09001 * 110.53869 * 54.26746 * 7 6 3 9 9 N 1.47314 * 110.60209 * 291.43238 * 7 6 3 10 10 C 1.34865 * 106.43838 * 241.52747 * 9 7 6 11 11 O 1.21544 * 123.72465 * 179.97438 * 10 9 7 12 12 N 1.33791 * 112.50128 * 359.85907 * 10 9 7 13 13 C 1.40260 * 124.17251 * 180.02562 * 12 10 9 14 14 C 1.38879 * 120.00021 * 353.66937 * 13 12 10 15 15 C 1.38003 * 120.00143 * 179.76978 * 14 13 12 16 16 C 1.38910 * 119.99916 * 0.50319 * 15 14 13 17 17 O 1.35768 * 120.00158 * 179.72572 * 16 15 14 18 18 C 1.34820 * 116.99650 * 185.41163 * 17 16 15 19 19 H 1.08002 * 119.99890 * 4.84744 * 18 17 16 20 20 C 1.38637 * 120.00185 * 184.85210 * 18 17 16 21 21 N 1.31563 * 120.00373 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99586 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47040 * 90.00607 * 22 20 18 24 24 H 1.48500 * 109.46925 * 210.00208 * 22 20 18 25 25 H 1.48501 * 109.47421 * 330.00171 * 22 20 18 26 26 C 1.38904 * 119.99038 * 359.74654 * 16 15 14 27 27 C 1.38009 * 119.99973 * 0.02562 * 26 16 15 28 28 C 1.34766 * 111.64611 * 0.09078 * 12 10 9 29 29 O 1.21237 * 127.15351 * 179.97438 * 28 12 10 30 30 H 1.08996 * 109.46774 * 60.00391 * 1 2 3 31 31 H 1.09000 * 109.46668 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47233 * 300.00259 * 1 2 3 33 33 H 1.09001 * 109.47233 * 239.99741 * 2 1 3 34 34 H 1.08996 * 109.46774 * 119.99609 * 2 1 3 35 35 H 1.08999 * 109.47162 * 65.23353 * 5 3 2 36 36 H 1.08996 * 109.47698 * 185.23154 * 5 3 2 37 37 H 1.09005 * 109.47169 * 305.23451 * 5 3 2 38 38 H 1.08995 * 109.47087 * 54.55929 * 6 3 2 39 39 H 1.09003 * 109.47345 * 174.55749 * 6 3 2 40 40 H 0.96995 * 126.68464 * 61.44401 * 9 7 6 41 41 H 1.08000 * 119.99447 * 359.97438 * 14 13 12 42 42 H 1.08003 * 119.99907 * 180.23027 * 15 14 13 43 43 H 0.96997 * 120.00301 * 179.97438 * 21 20 18 44 44 H 1.08002 * 119.99981 * 179.97438 * 26 16 15 45 45 H 1.07993 * 120.00162 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4443 0.1257 7 6 3.9646 0.8837 1.4920 8 1 3.5168 -0.0977 1.6486 9 7 3.5714 1.8103 2.5677 10 6 4.7109 2.1844 3.1846 11 8 4.7478 2.9521 4.1261 12 7 5.7953 1.6146 2.6465 13 6 7.1054 1.8318 3.0979 14 6 7.3530 2.7823 4.0797 15 6 8.6414 2.9927 4.5272 16 6 9.6920 2.2610 3.9882 17 8 10.9602 2.4719 4.4245 18 6 11.9456 1.8116 3.7837 19 1 11.7176 1.2123 2.9146 20 6 13.2515 1.9017 4.2404 21 7 14.2132 1.2577 3.6148 22 14 13.6458 2.9387 5.7433 23 1 13.5393 2.1007 6.9647 24 1 15.0268 3.4723 5.6280 25 1 12.6848 4.0674 5.8319 26 6 9.4448 1.3140 3.0025 27 6 8.1557 1.1005 2.5585 28 6 5.4734 0.8074 1.6165 29 8 6.2327 0.1561 0.9316 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5494 2.2083 -1.3536 36 1 2.0768 3.1222 -1.3484 37 1 1.9915 1.5361 -2.1517 38 1 3.9950 0.8248 -0.6612 39 1 3.9362 2.4645 0.0287 40 1 2.6705 2.0951 2.7867 41 1 6.5367 3.3545 4.4953 42 1 8.8334 3.7293 5.2934 43 1 15.1269 1.3211 3.9341 44 1 10.2616 0.7454 2.5831 45 1 7.9635 0.3645 1.7919 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349386712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:25 Heat of formation + Delta-G solvation = -65.121656 kcal Electronic energy + Delta-G solvation = -28150.258200 eV Core-core repulsion = 24133.717969 eV Total energy + Delta-G solvation = -4016.540231 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.88107 -40.92516 -39.92321 -39.00021 -38.06611 -37.07793 -35.32837 -34.40313 -32.05409 -31.72294 -30.30103 -29.79841 -27.42122 -26.29188 -24.84673 -24.19921 -23.87447 -22.66089 -21.67328 -20.66327 -19.90947 -19.31794 -19.17412 -18.23752 -17.83419 -17.32276 -16.73257 -16.50740 -16.02221 -15.88812 -15.84688 -15.72931 -15.52157 -15.44782 -15.14562 -14.58367 -14.37900 -14.29046 -14.16683 -14.05136 -13.83060 -13.51888 -13.13966 -12.96474 -12.80698 -12.74653 -12.71684 -12.32366 -12.08268 -11.83108 -11.70375 -11.61272 -11.44524 -11.41330 -11.31124 -10.86867 -10.85749 -10.52359 -10.02657 -8.92622 -8.52048 -6.24646 0.19549 0.36475 0.51574 1.01284 1.32464 1.35935 1.52974 1.88179 2.04907 2.27507 2.69630 2.78023 3.01073 3.02727 3.50994 3.67838 3.88845 3.95635 3.99313 4.03520 4.05468 4.20464 4.32535 4.34863 4.58903 4.65457 4.67249 4.77499 4.80229 4.87232 4.88264 4.98965 5.07974 5.18310 5.24461 5.25740 5.27065 5.29910 5.32409 5.42515 5.56222 5.60453 5.65442 5.77041 5.80536 6.00732 6.04836 6.28419 6.81179 7.00311 7.51011 8.59040 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029054 B = 0.002368 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.480638 B =11819.634041 C =12421.871269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.127 4.127 3 C -0.082 4.082 4 H 0.084 0.916 5 C -0.150 4.150 6 C -0.112 4.112 7 C 0.111 3.889 8 H 0.165 0.835 9 N -0.693 5.693 10 C 0.698 3.302 11 O -0.561 6.561 12 N -0.515 5.515 13 C 0.049 3.951 14 C -0.082 4.082 15 C -0.167 4.167 16 C 0.126 3.874 17 O -0.234 6.234 18 C -0.402 4.402 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.918 5.918 22 Si 0.971 3.029 23 H -0.266 1.266 24 H -0.267 1.267 25 H -0.261 1.261 26 C -0.213 4.213 27 C -0.087 4.087 28 C 0.511 3.489 29 O -0.482 6.482 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.457 0.543 41 H 0.169 0.831 42 H 0.143 0.857 43 H 0.286 0.714 44 H 0.122 0.878 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.041 -0.569 -7.251 31.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.164 4.164 3 C -0.101 4.101 4 H 0.102 0.898 5 C -0.207 4.207 6 C -0.151 4.151 7 C 0.003 3.997 8 H 0.181 0.819 9 N -0.359 5.359 10 C 0.400 3.600 11 O -0.437 6.437 12 N -0.252 5.252 13 C -0.042 4.042 14 C -0.102 4.102 15 C -0.187 4.187 16 C 0.075 3.925 17 O -0.141 6.141 18 C -0.478 4.478 19 H 0.100 0.900 20 C -0.187 4.187 21 N -0.558 5.558 22 Si 0.793 3.207 23 H -0.191 1.191 24 H -0.191 1.191 25 H -0.185 1.185 26 C -0.233 4.233 27 C -0.106 4.106 28 C 0.300 3.700 29 O -0.353 6.353 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.306 0.694 41 H 0.186 0.814 42 H 0.161 0.839 43 H 0.096 0.904 44 H 0.140 0.860 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -30.271 -0.440 -6.978 31.068 hybrid contribution 0.720 0.079 0.306 0.786 sum -29.552 -0.361 -6.672 30.298 Atomic orbital electron populations 1.21815 0.95428 1.01768 1.02165 1.21723 0.96382 0.95598 1.02732 1.21116 0.92119 0.97255 0.99594 0.89762 1.21863 1.01963 1.00201 0.96646 1.21934 0.98342 1.02305 0.92490 1.22336 0.88253 0.98130 0.90975 0.81855 1.45459 1.07834 1.48927 1.33721 1.16003 0.81339 0.80482 0.82214 1.90861 1.85108 1.38375 1.29337 1.43676 1.06456 1.43119 1.31979 1.17472 0.81621 1.02816 1.02278 1.21405 0.97035 0.96493 0.95231 1.20402 0.90081 1.03417 1.04790 1.19670 0.85006 0.94173 0.93617 1.83539 1.12394 1.62849 1.55324 1.20715 0.86400 1.29099 1.11583 0.89961 1.25295 0.93739 0.98062 1.01613 1.69727 1.01640 1.42427 1.42040 0.85218 0.78024 0.79330 0.78177 1.19069 1.19120 1.18476 1.21132 0.97405 1.02650 1.02123 1.21108 0.90458 0.99170 0.99879 1.21730 0.92868 0.77352 0.78026 1.90727 1.58349 1.40590 1.45586 0.92492 0.92859 0.92311 0.91668 0.91083 0.91496 0.92958 0.92556 0.88791 0.91032 0.69448 0.81450 0.83895 0.90433 0.85987 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.67 71.99 0.70 -0.06 16 2 C -0.13 -0.62 5.29 30.60 0.16 -0.46 16 3 C -0.08 -0.45 2.35 -10.80 -0.03 -0.47 16 4 H 0.08 0.29 7.36 -2.39 -0.02 0.28 16 5 C -0.15 -0.95 8.82 71.98 0.63 -0.32 16 6 C -0.11 -1.05 4.43 30.59 0.14 -0.92 16 7 C 0.11 1.34 3.50 44.37 0.16 1.49 16 8 H 0.16 1.06 6.32 -2.39 -0.02 1.05 16 9 N -0.69 -8.88 6.02 -459.11 -2.76 -11.64 16 10 C 0.70 16.94 8.54 179.33 1.53 18.47 16 11 O -0.56 -16.99 14.66 -3.85 -0.06 -17.04 16 12 N -0.51 -14.53 2.83 -594.31 -1.68 -16.21 16 13 C 0.05 1.77 6.56 38.10 0.25 2.02 16 14 C -0.08 -3.03 9.25 22.37 0.21 -2.82 16 15 C -0.17 -6.81 9.99 22.38 0.22 -6.59 16 16 C 0.13 6.03 6.65 22.59 0.15 6.18 16 17 O -0.23 -12.78 8.58 -22.84 -0.20 -12.98 16 18 C -0.40 -23.74 9.91 67.92 0.67 -23.06 16 19 H 0.08 5.09 5.50 -2.91 -0.02 5.07 16 20 C 0.01 0.70 5.49 84.83 0.47 1.16 16 21 N -0.92 -54.82 13.96 21.61 0.30 -54.51 16 22 Si 0.97 45.39 28.62 68.60 1.96 47.35 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 26 C -0.21 -9.85 9.13 22.38 0.20 -9.65 16 27 C -0.09 -3.44 9.31 22.37 0.21 -3.23 16 28 C 0.51 12.12 7.52 87.94 0.66 12.79 16 29 O -0.48 -14.18 15.06 -2.90 -0.04 -14.22 16 30 H 0.06 0.29 6.68 -2.39 -0.02 0.27 16 31 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.07 0.25 6.28 -2.39 -0.02 0.24 16 35 H 0.07 0.35 6.83 -2.39 -0.02 0.34 16 36 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.46 2.96 8.39 -92.71 -0.78 2.19 16 41 H 0.17 5.80 5.18 -2.91 -0.02 5.78 16 42 H 0.14 5.25 8.06 -2.91 -0.02 5.23 16 43 H 0.29 15.62 8.31 -92.71 -0.77 14.85 16 44 H 0.12 6.06 5.69 -2.91 -0.02 6.04 16 45 H 0.15 5.64 5.36 -2.91 -0.02 5.62 16 Total: -1.00 -72.20 364.40 4.13 -68.07 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.27 Total: 16.65 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 6.33 Total: -5.46 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -4.14 Total: -82.37 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -0.30 Total: -44.25 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.96 Total: 47.35 kcal Total: -72.20 4.13 -68.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349386712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.953 kcal (2) G-P(sol) polarization free energy of solvation -72.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds