Wall clock time and date at job start Tue Mar 31 2020 17:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47007 * 2 1 4 4 N 1.46496 * 109.46797 * 180.02562 * 3 2 1 5 5 C 1.34526 * 126.69333 * 89.97232 * 4 3 2 6 6 O 1.21536 * 123.76873 * 0.03854 * 5 4 3 7 7 N 1.33794 * 112.45948 * 180.02562 * 5 4 3 8 8 C 1.46498 * 124.17875 * 179.97438 * 7 5 4 9 9 C 1.50694 * 109.47187 * 90.02786 * 8 7 5 10 10 C 1.38324 * 119.96426 * 90.00171 * 9 8 7 11 11 C 1.38285 * 120.13471 * 179.72077 * 10 9 8 12 12 C 1.38118 * 120.07260 * 359.97438 * 11 10 9 13 13 C 1.38860 * 119.92772 * 0.02562 * 12 11 10 14 14 O 1.35756 * 120.06561 * 180.02562 * 13 12 11 15 15 C 1.34830 * 116.99962 * 354.46488 * 14 13 12 16 16 H 1.07995 * 120.00370 * 5.05571 * 15 14 13 17 17 C 1.38660 * 119.99875 * 185.05745 * 15 14 13 18 18 N 1.31552 * 119.99729 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99908 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47121 * 90.00077 * 19 17 15 21 21 H 1.48498 * 109.47156 * 209.99966 * 19 17 15 22 22 H 1.48504 * 109.47216 * 329.99988 * 19 17 15 23 23 C 1.38080 * 119.96748 * 269.72515 * 9 8 7 24 24 C 1.34767 * 111.64269 * 0.23535 * 7 5 4 25 25 O 1.21233 * 127.15623 * 179.73023 * 24 7 5 26 26 C 1.47314 * 126.68902 * 270.01680 * 4 3 2 27 27 H 1.08999 * 110.59749 * 298.64615 * 26 4 3 28 28 C 1.52998 * 110.60166 * 61.43905 * 26 4 3 29 29 H 1.09008 * 109.47116 * 299.99842 * 1 2 3 30 30 H 1.09004 * 109.47580 * 59.99958 * 1 2 3 31 31 H 1.08999 * 109.47448 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46885 * 240.00139 * 2 1 3 33 33 H 1.09000 * 109.46861 * 120.00091 * 2 1 3 34 34 H 1.08994 * 109.46894 * 59.99927 * 3 2 1 35 35 H 1.08996 * 109.46676 * 299.99826 * 3 2 1 36 36 H 1.09003 * 109.47082 * 330.02620 * 8 7 5 37 37 H 1.09003 * 109.46957 * 210.02998 * 8 7 5 38 38 H 1.07996 * 119.93353 * 359.70180 * 10 9 8 39 39 H 1.08004 * 119.96248 * 179.97438 * 11 10 9 40 40 H 1.07994 * 120.03603 * 180.02562 * 12 11 10 41 41 H 0.97006 * 119.99854 * 179.97438 * 18 17 15 42 42 H 1.07999 * 120.03314 * 0.25667 * 23 9 8 43 43 H 1.09001 * 109.47287 * 59.99705 * 28 26 4 44 44 H 1.09001 * 109.47133 * 180.02562 * 28 26 4 45 45 H 1.09004 * 109.46886 * 300.00462 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.3083 1.4421 -1.0796 6 8 3.9014 1.4424 -2.2249 7 7 5.6053 1.4416 -0.7512 8 6 6.7006 1.4406 -1.7241 9 6 7.0774 2.8610 -2.0579 10 6 8.0459 3.5116 -1.3149 11 6 8.3985 4.8131 -1.6218 12 6 7.7845 5.4672 -2.6720 13 6 6.8119 4.8167 -3.4196 14 8 6.2069 5.4568 -4.4527 15 6 6.5118 6.7582 -4.6292 16 1 7.2694 7.2234 -4.0160 17 6 5.8526 7.4995 -5.5981 18 7 6.1498 8.7694 -5.7699 19 14 4.5427 6.6948 -6.6592 20 1 3.2181 6.8371 -6.0033 21 1 4.5097 7.3537 -7.9895 22 1 4.8591 5.2537 -6.8283 23 6 6.4595 3.5097 -3.1086 24 6 5.7797 1.4365 0.5851 25 8 6.8325 1.4302 1.1862 26 6 4.3856 1.4419 1.1803 27 1 4.2228 2.3371 1.7805 28 6 4.1585 0.1837 2.0206 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 6.3808 0.9269 -2.6307 37 1 7.5629 0.9260 -1.2999 38 1 8.5276 3.0023 -0.4934 39 1 9.1548 5.3186 -1.0396 40 1 8.0606 6.4834 -2.9113 41 1 5.6889 9.2879 -6.4480 42 1 5.7036 3.0011 -3.6884 43 1 4.3743 -0.6990 1.4188 44 1 4.8179 0.2024 2.8884 45 1 3.1211 0.1516 2.3536 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352120331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:32 Heat of formation + Delta-G solvation = -43.578966 kcal Electronic energy + Delta-G solvation = -28753.085432 eV Core-core repulsion = 24737.479362 eV Total energy + Delta-G solvation = -4015.606070 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.49264 -39.21881 -38.68160 -37.25377 -36.53605 -35.64542 -33.93415 -32.38842 -31.24990 -30.93388 -29.41854 -27.58307 -25.79742 -25.11184 -24.74050 -22.32619 -22.07079 -21.46097 -21.01292 -20.09094 -17.83002 -17.59052 -17.40352 -16.99773 -16.26987 -15.96228 -15.38909 -15.17538 -14.92585 -14.84137 -14.70200 -14.44508 -14.06479 -13.79298 -13.77914 -13.55413 -13.31601 -12.94946 -12.73791 -12.60988 -12.48478 -12.34444 -12.24324 -12.15787 -11.81960 -11.63905 -11.47085 -11.12235 -11.02848 -10.83964 -10.80333 -10.64944 -10.18928 -10.15080 -9.76090 -9.37512 -9.16738 -8.87407 -8.27051 -7.40707 -6.41255 -4.08006 1.56710 1.66950 2.19914 2.29119 2.86534 3.01290 3.23887 3.28090 3.44067 3.82638 4.25684 4.32948 4.45031 4.46782 4.61535 4.69856 4.72296 4.88057 4.90213 5.05052 5.09124 5.14316 5.20220 5.26187 5.29196 5.40983 5.44017 5.56177 5.58701 5.64962 5.69740 5.73668 5.87035 5.89218 5.95491 6.09117 6.25144 6.32793 6.47868 6.75162 7.03682 7.10773 7.20072 7.27407 7.30538 7.56170 7.79098 8.03169 8.07123 8.94199 9.56756 10.66280 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.003576 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.674334 B = 7828.013579 C = 9543.841637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.146 4.146 3 C 0.151 3.849 4 N -0.625 5.625 5 C 0.699 3.301 6 O -0.531 6.531 7 N -0.568 5.568 8 C 0.166 3.834 9 C -0.086 4.086 10 C -0.181 4.181 11 C -0.081 4.081 12 C -0.211 4.211 13 C 0.154 3.846 14 O -0.216 6.216 15 C -0.390 4.390 16 H 0.106 0.894 17 C 0.064 3.936 18 N -0.880 5.880 19 Si 0.904 3.096 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.258 1.258 23 C -0.161 4.161 24 C 0.527 3.473 25 O -0.468 6.468 26 C 0.090 3.910 27 H 0.125 0.875 28 C -0.148 4.148 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.134 0.866 41 H 0.279 0.721 42 H 0.122 0.878 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.268 -18.155 16.152 25.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C 0.030 3.970 4 N -0.364 5.364 5 C 0.402 3.598 6 O -0.404 6.404 7 N -0.313 5.313 8 C 0.047 3.953 9 C -0.087 4.087 10 C -0.201 4.201 11 C -0.099 4.099 12 C -0.230 4.230 13 C 0.102 3.898 14 O -0.121 6.121 15 C -0.465 4.465 16 H 0.123 0.877 17 C -0.139 4.139 18 N -0.518 5.518 19 Si 0.729 3.271 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.182 1.182 23 C -0.181 4.181 24 C 0.314 3.686 25 O -0.337 6.337 26 C -0.018 4.018 27 H 0.142 0.858 28 C -0.206 4.206 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.151 0.849 41 H 0.090 0.910 42 H 0.140 0.860 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.199 -18.026 15.473 24.822 hybrid contribution -0.416 0.136 -0.456 0.632 sum -7.615 -17.890 15.017 24.567 Atomic orbital electron populations 1.21694 0.94752 1.02140 1.02198 1.22058 0.96417 0.97005 1.02996 1.21398 0.74320 0.97326 1.03975 1.47762 1.06140 1.77543 1.04974 1.15921 0.80792 0.77672 0.85434 1.90997 1.76707 1.54050 1.18614 1.46534 1.08009 1.67784 1.08966 1.20532 0.87567 0.95334 0.91906 1.19374 0.97959 0.94692 0.96717 1.20596 1.01598 0.95862 1.02009 1.20786 0.98459 0.94260 0.96378 1.21366 1.00550 1.02077 0.99023 1.19051 0.91654 0.91654 0.87408 1.83591 1.61129 1.25453 1.41937 1.20764 1.22904 0.81696 1.21170 0.87662 1.24454 0.97829 0.94633 0.96981 1.69647 1.41904 1.06429 1.33781 0.86197 0.81220 0.80579 0.79056 1.19870 1.20744 1.18237 1.20157 1.03645 0.93744 1.00505 1.20788 0.91093 0.74404 0.82327 1.90782 1.30701 1.45993 1.66240 1.22112 0.87396 1.02742 0.89520 0.85777 1.21983 1.03632 0.95181 0.99829 0.92500 0.92227 0.92333 0.91286 0.91430 0.89668 0.89103 0.88061 0.88191 0.87048 0.86994 0.84854 0.91049 0.85955 0.91600 0.89904 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.15 -1.01 6.13 -26.73 -0.16 -1.17 16 3 C 0.15 1.23 5.98 -4.04 -0.02 1.21 16 4 N -0.62 -6.63 2.75 -172.41 -0.47 -7.10 16 5 C 0.70 10.16 8.31 -88.02 -0.73 9.42 16 6 O -0.53 -9.56 17.15 5.33 0.09 -9.46 16 7 N -0.57 -7.91 2.59 -122.03 -0.32 -8.22 16 8 C 0.17 2.39 5.82 -5.20 -0.03 2.36 16 9 C -0.09 -1.53 5.46 -104.65 -0.57 -2.10 16 10 C -0.18 -3.17 9.70 -39.53 -0.38 -3.56 16 11 C -0.08 -1.50 10.04 -39.61 -0.40 -1.90 16 12 C -0.21 -4.65 9.17 -39.40 -0.36 -5.01 16 13 C 0.15 3.69 6.65 -39.11 -0.26 3.43 16 14 O -0.22 -5.88 8.59 0.03 0.00 -5.88 16 15 C -0.39 -11.20 9.95 30.89 0.31 -10.89 16 16 H 0.11 3.07 5.44 -52.49 -0.29 2.78 16 17 C 0.06 1.84 5.49 -17.52 -0.10 1.74 16 18 N -0.88 -25.73 13.96 55.48 0.77 -24.95 16 19 Si 0.90 22.28 28.62 -169.99 -4.86 17.41 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.26 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.16 -3.38 9.64 -39.40 -0.38 -3.76 16 24 C 0.53 6.56 7.64 -10.56 -0.08 6.48 16 25 O -0.47 -6.70 17.75 5.60 0.10 -6.60 16 26 C 0.09 0.80 4.06 -68.20 -0.28 0.52 16 27 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 28 C -0.15 -0.89 8.70 37.16 0.32 -0.57 16 29 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.39 6.28 -51.93 -0.33 0.06 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.89 8.03 -51.93 -0.42 0.47 16 36 H 0.10 1.40 7.80 -51.93 -0.41 0.99 16 37 H 0.10 1.23 7.94 -51.93 -0.41 0.82 16 38 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 40 H 0.13 3.07 5.64 -52.49 -0.30 2.77 16 41 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.33 7.01 -51.93 -0.36 -0.03 16 LS Contribution 381.14 15.07 5.74 5.74 Total: -1.00 -33.49 381.14 -7.99 -41.48 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.29 Total: 1.88 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -2.76 Total: -4.30 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: -0.01 Total: -40.28 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: 0.19 Total: -21.95 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.86 Total: 17.41 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.49 -7.99 -41.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352120331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.097 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds