Wall clock time and date at job start Tue Mar 31 2020 17:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47007 * 2 1 4 4 N 1.46496 * 109.46797 * 180.02562 * 3 2 1 5 5 C 1.34526 * 126.69333 * 89.97232 * 4 3 2 6 6 O 1.21536 * 123.76873 * 0.03854 * 5 4 3 7 7 N 1.33794 * 112.45948 * 180.02562 * 5 4 3 8 8 C 1.46498 * 124.17875 * 179.97438 * 7 5 4 9 9 C 1.50694 * 109.47187 * 90.02786 * 8 7 5 10 10 C 1.38324 * 119.96426 * 90.00171 * 9 8 7 11 11 C 1.38285 * 120.13471 * 179.72077 * 10 9 8 12 12 C 1.38118 * 120.07260 * 359.97438 * 11 10 9 13 13 C 1.38860 * 119.92772 * 0.02562 * 12 11 10 14 14 O 1.35756 * 120.06561 * 180.02562 * 13 12 11 15 15 C 1.34830 * 116.99962 * 354.46488 * 14 13 12 16 16 H 1.07995 * 120.00370 * 5.05571 * 15 14 13 17 17 C 1.38660 * 119.99875 * 185.05745 * 15 14 13 18 18 N 1.31552 * 119.99729 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99908 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47121 * 90.00077 * 19 17 15 21 21 H 1.48498 * 109.47156 * 209.99966 * 19 17 15 22 22 H 1.48504 * 109.47216 * 329.99988 * 19 17 15 23 23 C 1.38080 * 119.96748 * 269.72515 * 9 8 7 24 24 C 1.34767 * 111.64269 * 0.23535 * 7 5 4 25 25 O 1.21233 * 127.15623 * 179.73023 * 24 7 5 26 26 C 1.47314 * 126.68902 * 270.01680 * 4 3 2 27 27 H 1.08999 * 110.59749 * 298.64615 * 26 4 3 28 28 C 1.52998 * 110.60166 * 61.43905 * 26 4 3 29 29 H 1.09008 * 109.47116 * 299.99842 * 1 2 3 30 30 H 1.09004 * 109.47580 * 59.99958 * 1 2 3 31 31 H 1.08999 * 109.47448 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46885 * 240.00139 * 2 1 3 33 33 H 1.09000 * 109.46861 * 120.00091 * 2 1 3 34 34 H 1.08994 * 109.46894 * 59.99927 * 3 2 1 35 35 H 1.08996 * 109.46676 * 299.99826 * 3 2 1 36 36 H 1.09003 * 109.47082 * 330.02620 * 8 7 5 37 37 H 1.09003 * 109.46957 * 210.02998 * 8 7 5 38 38 H 1.07996 * 119.93353 * 359.70180 * 10 9 8 39 39 H 1.08004 * 119.96248 * 179.97438 * 11 10 9 40 40 H 1.07994 * 120.03603 * 180.02562 * 12 11 10 41 41 H 0.97006 * 119.99854 * 179.97438 * 18 17 15 42 42 H 1.07999 * 120.03314 * 0.25667 * 23 9 8 43 43 H 1.09001 * 109.47287 * 59.99705 * 28 26 4 44 44 H 1.09001 * 109.47133 * 180.02562 * 28 26 4 45 45 H 1.09004 * 109.46886 * 300.00462 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.3083 1.4421 -1.0796 6 8 3.9014 1.4424 -2.2249 7 7 5.6053 1.4416 -0.7512 8 6 6.7006 1.4406 -1.7241 9 6 7.0774 2.8610 -2.0579 10 6 8.0459 3.5116 -1.3149 11 6 8.3985 4.8131 -1.6218 12 6 7.7845 5.4672 -2.6720 13 6 6.8119 4.8167 -3.4196 14 8 6.2069 5.4568 -4.4527 15 6 6.5118 6.7582 -4.6292 16 1 7.2694 7.2234 -4.0160 17 6 5.8526 7.4995 -5.5981 18 7 6.1498 8.7694 -5.7699 19 14 4.5427 6.6948 -6.6592 20 1 3.2181 6.8371 -6.0033 21 1 4.5097 7.3537 -7.9895 22 1 4.8591 5.2537 -6.8283 23 6 6.4595 3.5097 -3.1086 24 6 5.7797 1.4365 0.5851 25 8 6.8325 1.4302 1.1862 26 6 4.3856 1.4419 1.1803 27 1 4.2228 2.3371 1.7805 28 6 4.1585 0.1837 2.0206 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 6.3808 0.9269 -2.6307 37 1 7.5629 0.9260 -1.2999 38 1 8.5276 3.0023 -0.4934 39 1 9.1548 5.3186 -1.0396 40 1 8.0606 6.4834 -2.9113 41 1 5.6889 9.2879 -6.4480 42 1 5.7036 3.0011 -3.6884 43 1 4.3743 -0.6990 1.4188 44 1 4.8179 0.2024 2.8884 45 1 3.1211 0.1516 2.3536 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352120331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:31 Heat of formation + Delta-G solvation = -63.505609 kcal Electronic energy + Delta-G solvation = -28753.949516 eV Core-core repulsion = 24737.479362 eV Total energy + Delta-G solvation = -4016.470154 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.48984 -40.97533 -39.73877 -38.75351 -37.69225 -36.73236 -34.76443 -34.47983 -32.54496 -31.66083 -31.11314 -28.64798 -27.33059 -26.55759 -25.65079 -23.50740 -23.14398 -22.57224 -22.30450 -21.22421 -19.75258 -19.12834 -18.52499 -18.09217 -17.37762 -16.98819 -16.82966 -16.58469 -16.25798 -15.93733 -15.74131 -15.64577 -15.52509 -15.43162 -15.07893 -14.56427 -14.45188 -14.24454 -14.13276 -13.90921 -13.48139 -13.22333 -13.20015 -13.07533 -12.91606 -12.78029 -12.68344 -12.61677 -12.48175 -12.16668 -12.00795 -11.98249 -11.49137 -11.45616 -11.17668 -10.96720 -10.89808 -10.00723 -9.87114 -9.19590 -8.54846 -6.27371 0.20413 0.56696 0.60082 1.16288 1.26408 1.30484 1.47513 1.90430 1.99439 2.23837 2.70048 2.91350 2.99490 3.06898 3.58877 3.75175 3.85558 3.93613 4.03829 4.07611 4.12979 4.25412 4.31959 4.34569 4.39836 4.46255 4.57400 4.61713 4.66558 4.72625 4.74576 4.79652 4.93650 4.97103 5.10774 5.12451 5.23883 5.30617 5.31366 5.37115 5.52183 5.56335 5.60495 5.69233 5.83288 6.09360 6.12797 6.33236 6.79638 7.00993 7.53714 8.56689 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.003576 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.674334 B = 7828.013579 C = 9543.841637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.144 3.856 4 N -0.615 5.615 5 C 0.689 3.311 6 O -0.578 6.578 7 N -0.574 5.574 8 C 0.166 3.834 9 C -0.075 4.075 10 C -0.158 4.158 11 C -0.074 4.074 12 C -0.225 4.225 13 C 0.119 3.881 14 O -0.246 6.246 15 C -0.401 4.401 16 H 0.085 0.915 17 C 0.015 3.985 18 N -0.919 5.919 19 Si 0.964 3.036 20 H -0.267 1.267 21 H -0.261 1.261 22 H -0.269 1.269 23 C -0.166 4.166 24 C 0.523 3.477 25 O -0.485 6.485 26 C 0.095 3.905 27 H 0.150 0.850 28 C -0.142 4.142 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.128 0.872 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.114 0.886 41 H 0.286 0.714 42 H 0.112 0.888 43 H 0.058 0.942 44 H 0.094 0.906 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.895 -20.479 19.439 29.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C 0.024 3.976 4 N -0.353 5.353 5 C 0.392 3.608 6 O -0.454 6.454 7 N -0.319 5.319 8 C 0.046 3.954 9 C -0.076 4.076 10 C -0.177 4.177 11 C -0.092 4.092 12 C -0.244 4.244 13 C 0.070 3.930 14 O -0.154 6.154 15 C -0.477 4.477 16 H 0.102 0.898 17 C -0.184 4.184 18 N -0.560 5.560 19 Si 0.787 3.213 20 H -0.192 1.192 21 H -0.186 1.186 22 H -0.194 1.194 23 C -0.186 4.186 24 C 0.312 3.688 25 O -0.356 6.356 26 C -0.011 4.011 27 H 0.168 0.832 28 C -0.199 4.199 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.139 0.861 35 H 0.086 0.914 36 H 0.120 0.880 37 H 0.146 0.854 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.132 0.868 41 H 0.096 0.904 42 H 0.130 0.870 43 H 0.077 0.923 44 H 0.113 0.887 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.828 -20.376 18.835 28.830 hybrid contribution -0.101 0.665 -1.197 1.373 sum -7.929 -19.711 17.637 27.612 Atomic orbital electron populations 1.21683 0.93703 1.02626 1.02530 1.21981 0.97208 0.95856 1.02602 1.21674 0.72881 0.98451 1.04613 1.47969 1.06925 1.75895 1.04494 1.16210 0.81311 0.77631 0.85683 1.90966 1.77412 1.56382 1.20669 1.46558 1.07698 1.67967 1.09647 1.20553 0.88989 0.92970 0.92899 1.19758 0.96746 0.96229 0.94870 1.21012 0.99987 0.95098 1.01559 1.21150 0.98280 0.94738 0.95067 1.21393 1.01029 1.01624 1.00368 1.19553 0.92794 0.92793 0.87885 1.83541 1.62933 1.24686 1.44246 1.20735 1.22839 0.82760 1.21350 0.89753 1.25193 0.99831 0.95166 0.98172 1.69713 1.43568 1.07526 1.35151 0.85317 0.78731 0.78969 0.78310 1.19240 1.18569 1.19353 1.20252 1.03958 0.92790 1.01576 1.21372 0.92390 0.73448 0.81605 1.90773 1.31725 1.46842 1.66265 1.22382 0.84435 1.05476 0.88850 0.83242 1.22013 1.05566 0.92993 0.99357 0.90692 0.93390 0.91795 0.93955 0.89485 0.86103 0.91383 0.87999 0.85389 0.83746 0.83562 0.86768 0.90446 0.86960 0.92261 0.88695 0.87841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.98 0.71 -0.64 16 2 C -0.14 -1.61 6.13 30.60 0.19 -1.43 16 3 C 0.14 2.04 5.98 86.38 0.52 2.56 16 4 N -0.61 -11.72 2.75 -817.80 -2.25 -13.97 16 5 C 0.69 19.48 8.31 179.44 1.49 20.97 16 6 O -0.58 -21.31 17.15 -3.83 -0.07 -21.37 16 7 N -0.57 -14.93 2.59 -777.23 -2.01 -16.94 16 8 C 0.17 4.46 5.82 85.63 0.50 4.96 16 9 C -0.07 -2.55 5.46 -19.88 -0.11 -2.66 16 10 C -0.16 -5.04 9.70 22.30 0.22 -4.82 16 11 C -0.07 -2.64 10.04 22.25 0.22 -2.42 16 12 C -0.22 -10.17 9.17 22.39 0.21 -9.96 16 13 C 0.12 5.90 6.65 22.58 0.15 6.05 16 14 O -0.25 -14.16 8.59 -22.80 -0.20 -14.35 16 15 C -0.40 -24.34 9.95 67.92 0.68 -23.66 16 16 H 0.09 5.29 5.44 -2.91 -0.02 5.28 16 17 C 0.02 0.91 5.49 84.84 0.47 1.38 16 18 N -0.92 -55.74 13.96 21.61 0.30 -55.44 16 19 Si 0.96 47.44 28.62 68.60 1.96 49.41 16 20 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 22 H -0.27 -13.53 7.11 99.48 0.71 -12.82 16 23 C -0.17 -7.11 9.64 22.39 0.22 -6.90 16 24 C 0.52 11.43 7.64 87.94 0.67 12.10 16 25 O -0.49 -12.18 17.75 -2.88 -0.05 -12.23 16 26 C 0.09 1.33 4.06 44.37 0.18 1.51 16 27 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16 28 C -0.14 -1.08 8.70 71.98 0.63 -0.45 16 29 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 0.68 6.28 -2.39 -0.01 0.67 16 34 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 1.31 8.03 -2.39 -0.02 1.29 16 36 H 0.10 2.74 7.80 -2.39 -0.02 2.72 16 37 H 0.13 2.73 7.94 -2.39 -0.02 2.71 16 38 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 39 H 0.15 4.18 8.06 -2.91 -0.02 4.16 16 40 H 0.11 5.58 5.64 -2.91 -0.02 5.56 16 41 H 0.29 15.87 8.31 -92.70 -0.77 15.10 16 42 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 43 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.10 0.32 7.01 -2.38 -0.02 0.30 16 Total: -1.00 -77.74 381.14 5.63 -72.11 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 1.00 Total: 16.21 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 6.93 Total: -3.42 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -3.95 Total: -86.35 kcal Atomic # 8 Polarization: -47.64 SS G_CDS: -0.31 Total: -47.95 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.96 Total: 49.41 kcal Total: -77.74 5.63 -72.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352120331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.607 kcal (2) G-P(sol) polarization free energy of solvation -77.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds