Wall clock time and date at job start Tue Mar 31 2020 17:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46878 * 2 1 4 4 H 1.08997 * 109.46959 * 55.00203 * 3 2 1 5 5 N 1.46494 * 109.47135 * 294.99946 * 3 2 1 6 6 C 1.34780 * 120.00332 * 84.99963 * 5 3 2 7 7 O 1.21596 * 119.99507 * 0.02562 * 6 5 3 8 8 N 1.34768 * 120.00292 * 180.02562 * 6 5 3 9 9 C 1.40201 * 120.00142 * 180.02562 * 8 6 5 10 10 C 1.40396 * 125.97176 * 359.97438 * 9 8 6 11 11 C 1.35243 * 107.86896 * 179.97438 * 10 9 8 12 12 N 1.34962 * 107.85356 * 0.22585 * 11 10 9 13 13 C 1.46501 * 125.97082 * 179.76577 * 12 11 10 14 14 C 1.50703 * 109.46706 * 125.00181 * 13 12 11 15 15 H 1.07992 * 120.00189 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99721 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99839 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00259 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46837 * 89.99815 * 18 16 14 20 20 H 1.48493 * 109.47140 * 209.99651 * 18 16 14 21 21 H 1.48494 * 109.46790 * 329.99908 * 18 16 14 22 22 N 1.31202 * 125.97171 * 179.97438 * 9 8 6 23 23 C 1.52999 * 109.46775 * 175.00008 * 3 2 1 24 24 H 1.09003 * 109.46783 * 175.00207 * 23 3 2 25 25 O 1.42897 * 109.47348 * 55.00058 * 23 3 2 26 26 C 1.53007 * 109.46868 * 294.99916 * 23 3 2 27 27 F 1.39893 * 109.47222 * 65.00622 * 26 23 3 28 28 F 1.39904 * 109.46378 * 185.00156 * 26 23 3 29 29 H 1.09001 * 109.47114 * 299.99811 * 1 2 3 30 30 H 1.08998 * 109.47275 * 60.00298 * 1 2 3 31 31 H 1.09007 * 109.47172 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47114 * 240.00189 * 2 1 3 33 33 H 1.08998 * 109.46582 * 119.99989 * 2 1 3 34 34 H 0.96998 * 120.00015 * 264.99989 * 5 3 2 35 35 H 0.96998 * 120.00056 * 359.97438 * 8 6 5 36 36 H 1.08003 * 126.06768 * 359.93842 * 10 9 8 37 37 H 1.08002 * 126.06857 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.47836 * 245.00121 * 13 12 11 39 39 H 1.08997 * 109.47518 * 5.00660 * 13 12 11 40 40 H 0.96996 * 120.00319 * 180.02562 * 17 16 14 41 41 H 0.96701 * 113.99713 * 299.99936 * 25 23 3 42 42 H 1.08994 * 109.47110 * 304.99980 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4350 2.6644 -1.3670 7 8 -0.3413 2.6326 -0.4317 8 7 0.0783 3.2664 -2.5187 9 6 -1.1878 3.8566 -2.6384 10 6 -2.1779 3.8933 -1.6437 11 6 -3.2478 4.5497 -2.1471 12 7 -2.9528 4.9119 -3.4133 13 6 -3.8355 5.6407 -4.3277 14 6 -3.1312 6.8756 -4.8279 15 1 -2.1266 7.0953 -4.4981 16 6 -3.7692 7.7244 -5.7075 17 7 -3.1545 8.8018 -6.1444 18 14 -5.5067 7.3441 -6.2785 19 1 -6.4812 7.9738 -5.3518 20 1 -5.7066 7.8825 -7.6479 21 1 -5.7132 5.8736 -6.2897 22 7 -1.6545 4.4711 -3.6995 23 6 3.5648 1.4444 0.1257 24 1 3.9354 2.4656 0.0366 25 8 4.1293 0.6405 -0.9121 26 6 3.9648 0.8736 1.4878 27 9 3.5894 -0.4722 1.5579 28 9 5.3504 0.9802 1.6492 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 2.2719 2.1232 -1.9977 35 1 0.6978 3.2921 -3.2647 36 1 -2.0993 3.4716 -0.6525 37 1 -4.1752 4.7453 -1.6293 38 1 -4.0917 5.0012 -5.1724 39 1 -4.7453 5.9294 -3.8015 40 1 -3.6033 9.3991 -6.7629 41 1 3.8426 -0.2829 -0.8943 42 1 3.4630 1.4325 2.2775 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414401338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:35 Heat of formation + Delta-G solvation = -88.143139 kcal Electronic energy + Delta-G solvation = -28568.658935 eV Core-core repulsion = 24029.183638 eV Total energy + Delta-G solvation = -4539.475297 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.61711 -47.60409 -40.94711 -40.04467 -38.36426 -35.44678 -34.62273 -33.39720 -32.41764 -31.11548 -30.64973 -29.38707 -27.22494 -26.10303 -23.34311 -22.96404 -22.02440 -21.01433 -20.45946 -19.87432 -18.53941 -18.29519 -18.19696 -17.65676 -17.08517 -16.68300 -16.14341 -16.00355 -15.77326 -15.18480 -14.96364 -14.65962 -14.35956 -14.33195 -14.20275 -13.78637 -13.67051 -13.34022 -13.10439 -12.98342 -12.80052 -12.54499 -12.34011 -12.32325 -12.12524 -11.69868 -11.36737 -11.17214 -10.98519 -10.78655 -10.66594 -10.57636 -10.12859 -9.99967 -9.77620 -9.53335 -9.31247 -8.77242 -8.19041 -7.49971 -6.24116 -4.26356 2.14945 2.56060 3.00465 3.05011 3.15082 3.21985 3.23470 3.43766 3.55108 3.64894 3.70348 3.78721 4.07552 4.22223 4.25642 4.36522 4.53901 4.73216 4.99535 5.03669 5.19857 5.29409 5.42640 5.60734 5.67912 5.80774 5.92769 6.10949 6.17490 6.31769 6.34683 6.44388 6.55219 6.69566 6.81850 6.91810 7.26930 7.41032 7.80300 7.84947 8.33199 8.50475 8.57750 8.85826 9.30897 10.88612 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.030798 B = 0.002133 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.919431 B =13124.890964 C =13620.074001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.165 4.165 3 C 0.137 3.863 4 H 0.106 0.894 5 N -0.734 5.734 6 C 0.716 3.284 7 O -0.562 6.562 8 N -0.643 5.643 9 C 0.278 3.722 10 C -0.281 4.281 11 C 0.050 3.950 12 N -0.320 5.320 13 C 0.232 3.768 14 C -0.534 4.534 15 H 0.085 0.915 16 C 0.076 3.924 17 N -0.888 5.888 18 Si 0.873 3.127 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.264 1.264 22 N -0.300 5.300 23 C 0.054 3.946 24 H 0.136 0.864 25 O -0.541 6.541 26 C 0.236 3.764 27 F -0.195 7.195 28 F -0.195 7.195 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.402 0.598 35 H 0.408 0.592 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.042 0.958 39 H 0.049 0.951 40 H 0.268 0.732 41 H 0.384 0.616 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.009 -18.475 15.094 26.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.203 4.203 3 C 0.031 3.969 4 H 0.123 0.877 5 N -0.391 5.391 6 C 0.415 3.585 7 O -0.437 6.437 8 N -0.292 5.292 9 C 0.024 3.976 10 C -0.313 4.313 11 C -0.099 4.099 12 N -0.102 5.102 13 C 0.113 3.887 14 C -0.572 4.572 15 H 0.103 0.897 16 C -0.128 4.128 17 N -0.525 5.525 18 Si 0.699 3.301 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.189 1.189 22 N -0.130 5.130 23 C -0.007 4.007 24 H 0.154 0.846 25 O -0.348 6.348 26 C 0.181 3.819 27 F -0.176 7.176 28 F -0.176 7.176 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.238 0.762 35 H 0.243 0.757 36 H 0.180 0.820 37 H 0.185 0.815 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.234 0.766 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.741 -17.380 14.398 25.440 hybrid contribution -0.644 -0.723 -0.221 0.993 sum 11.097 -18.102 14.176 25.531 Atomic orbital electron populations 1.21735 0.93770 1.00669 1.03620 1.22486 0.98699 0.95288 1.03841 1.21393 0.92113 0.94938 0.88482 0.87654 1.44846 1.16037 1.61278 1.16956 1.15524 0.82130 0.78190 0.82629 1.90878 1.50843 1.63628 1.38368 1.41370 1.14641 1.57706 1.15514 1.18775 0.86165 0.98275 0.94397 1.21519 0.93272 1.13835 1.02658 1.22557 1.00648 0.99722 0.87019 1.48591 1.09781 1.41270 1.10543 1.20037 0.87858 0.92349 0.88432 1.21111 1.03636 1.04522 1.27951 0.89652 1.24840 0.97968 0.94649 0.95340 1.69871 1.37718 1.12782 1.32148 0.86904 0.84843 0.79314 0.79031 1.19710 1.20546 1.18866 1.77393 0.95003 1.19809 1.20810 1.23423 0.93654 0.97881 0.85790 0.84595 1.86641 1.71746 1.25643 1.50723 1.22618 0.78065 0.80157 1.01050 1.92872 1.90246 1.37021 1.97469 1.93032 1.31925 1.95905 1.96708 0.91955 0.92055 0.93607 0.91622 0.88643 0.76249 0.75723 0.81954 0.81472 0.94075 0.93347 0.92182 0.76612 0.85996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.51 37.16 0.32 -1.06 16 2 C -0.16 -1.13 4.66 -26.73 -0.12 -1.26 16 3 C 0.14 0.93 2.13 -67.93 -0.14 0.78 16 4 H 0.11 0.78 7.58 -51.93 -0.39 0.39 16 5 N -0.73 -6.27 5.02 -58.68 -0.29 -6.57 16 6 C 0.72 9.26 7.10 -86.92 -0.62 8.64 16 7 O -0.56 -8.62 10.61 5.28 0.06 -8.57 16 8 N -0.64 -9.37 5.45 -15.51 -0.08 -9.45 16 9 C 0.28 5.36 8.11 -154.36 -1.25 4.11 16 10 C -0.28 -5.27 9.61 -39.84 -0.38 -5.66 16 11 C 0.05 0.94 11.44 -17.24 -0.20 0.74 16 12 N -0.32 -7.15 3.67 -62.56 -0.23 -7.38 16 13 C 0.23 5.46 5.33 -5.19 -0.03 5.43 16 14 C -0.53 -14.98 9.79 -34.44 -0.34 -15.32 16 15 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 16 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 17 N -0.89 -26.52 13.96 55.43 0.77 -25.74 16 18 Si 0.87 20.02 27.47 -169.99 -4.67 15.35 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 21 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 22 N -0.30 -6.74 12.42 31.44 0.39 -6.35 16 23 C 0.05 0.28 3.17 -26.73 -0.08 0.20 16 24 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 25 O -0.54 -3.40 12.96 -35.23 -0.46 -3.86 16 26 C 0.24 1.17 4.95 37.16 0.18 1.36 16 27 F -0.19 -1.17 13.54 2.25 0.03 -1.14 16 28 F -0.19 -1.48 17.33 2.25 0.04 -1.44 16 29 H 0.06 0.66 7.84 -51.93 -0.41 0.26 16 30 H 0.06 0.76 5.65 -51.93 -0.29 0.47 16 31 H 0.04 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.07 0.41 7.00 -51.93 -0.36 0.05 16 33 H 0.10 0.57 5.10 -51.93 -0.27 0.30 16 34 H 0.40 2.78 8.40 -40.82 -0.34 2.44 16 35 H 0.41 4.93 8.84 -40.82 -0.36 4.57 16 36 H 0.16 2.93 5.91 -52.48 -0.31 2.62 16 37 H 0.17 2.49 8.06 -52.49 -0.42 2.06 16 38 H 0.04 0.96 7.20 -51.93 -0.37 0.59 16 39 H 0.05 1.03 7.50 -51.93 -0.39 0.64 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.38 1.68 6.82 45.56 0.31 1.99 16 42 H 0.12 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 350.12 15.07 5.28 5.28 Total: -1.00 -34.68 350.12 -6.40 -41.08 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -4.47 Total: 8.80 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -2.76 Total: -0.02 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.56 Total: -55.48 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.40 Total: -12.43 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.07 Total: -2.58 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.67 Total: 15.35 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.68 -6.40 -41.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414401338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.065 kcal (2) G-P(sol) polarization free energy of solvation -34.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds