Wall clock time and date at job start Tue Mar 31 2020 17:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46878 * 2 1 4 4 H 1.08997 * 109.46959 * 55.00203 * 3 2 1 5 5 N 1.46494 * 109.47135 * 294.99946 * 3 2 1 6 6 C 1.34780 * 120.00332 * 84.99963 * 5 3 2 7 7 O 1.21596 * 119.99507 * 0.02562 * 6 5 3 8 8 N 1.34768 * 120.00292 * 180.02562 * 6 5 3 9 9 C 1.40201 * 120.00142 * 180.02562 * 8 6 5 10 10 C 1.40396 * 125.97176 * 359.97438 * 9 8 6 11 11 C 1.35243 * 107.86896 * 179.97438 * 10 9 8 12 12 N 1.34962 * 107.85356 * 0.22585 * 11 10 9 13 13 C 1.46501 * 125.97082 * 179.76577 * 12 11 10 14 14 C 1.50703 * 109.46706 * 125.00181 * 13 12 11 15 15 H 1.07992 * 120.00189 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99721 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99839 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00259 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46837 * 89.99815 * 18 16 14 20 20 H 1.48493 * 109.47140 * 209.99651 * 18 16 14 21 21 H 1.48494 * 109.46790 * 329.99908 * 18 16 14 22 22 N 1.31202 * 125.97171 * 179.97438 * 9 8 6 23 23 C 1.52999 * 109.46775 * 175.00008 * 3 2 1 24 24 H 1.09003 * 109.46783 * 175.00207 * 23 3 2 25 25 O 1.42897 * 109.47348 * 55.00058 * 23 3 2 26 26 C 1.53007 * 109.46868 * 294.99916 * 23 3 2 27 27 F 1.39893 * 109.47222 * 65.00622 * 26 23 3 28 28 F 1.39904 * 109.46378 * 185.00156 * 26 23 3 29 29 H 1.09001 * 109.47114 * 299.99811 * 1 2 3 30 30 H 1.08998 * 109.47275 * 60.00298 * 1 2 3 31 31 H 1.09007 * 109.47172 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47114 * 240.00189 * 2 1 3 33 33 H 1.08998 * 109.46582 * 119.99989 * 2 1 3 34 34 H 0.96998 * 120.00015 * 264.99989 * 5 3 2 35 35 H 0.96998 * 120.00056 * 359.97438 * 8 6 5 36 36 H 1.08003 * 126.06768 * 359.93842 * 10 9 8 37 37 H 1.08002 * 126.06857 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.47836 * 245.00121 * 13 12 11 39 39 H 1.08997 * 109.47518 * 5.00660 * 13 12 11 40 40 H 0.96996 * 120.00319 * 180.02562 * 17 16 14 41 41 H 0.96701 * 113.99713 * 299.99936 * 25 23 3 42 42 H 1.08994 * 109.47110 * 304.99980 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4350 2.6644 -1.3670 7 8 -0.3413 2.6326 -0.4317 8 7 0.0783 3.2664 -2.5187 9 6 -1.1878 3.8566 -2.6384 10 6 -2.1779 3.8933 -1.6437 11 6 -3.2478 4.5497 -2.1471 12 7 -2.9528 4.9119 -3.4133 13 6 -3.8355 5.6407 -4.3277 14 6 -3.1312 6.8756 -4.8279 15 1 -2.1266 7.0953 -4.4981 16 6 -3.7692 7.7244 -5.7075 17 7 -3.1545 8.8018 -6.1444 18 14 -5.5067 7.3441 -6.2785 19 1 -6.4812 7.9738 -5.3518 20 1 -5.7066 7.8825 -7.6479 21 1 -5.7132 5.8736 -6.2897 22 7 -1.6545 4.4711 -3.6995 23 6 3.5648 1.4444 0.1257 24 1 3.9354 2.4656 0.0366 25 8 4.1293 0.6405 -0.9121 26 6 3.9648 0.8736 1.4878 27 9 3.5894 -0.4722 1.5579 28 9 5.3504 0.9802 1.6492 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 2.2719 2.1232 -1.9977 35 1 0.6978 3.2921 -3.2647 36 1 -2.0993 3.4716 -0.6525 37 1 -4.1752 4.7453 -1.6293 38 1 -4.0917 5.0012 -5.1724 39 1 -4.7453 5.9294 -3.8015 40 1 -3.6033 9.3991 -6.7629 41 1 3.8426 -0.2829 -0.8943 42 1 3.4630 1.4325 2.2775 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414401338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:35 Heat of formation + Delta-G solvation = -115.695175 kcal Electronic energy + Delta-G solvation = -28569.853681 eV Core-core repulsion = 24029.183638 eV Total energy + Delta-G solvation = -4540.670043 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.06508 -48.07474 -42.25469 -41.18080 -39.07338 -36.41087 -35.71411 -35.21065 -33.57220 -32.58968 -31.24017 -30.90663 -28.94597 -26.84629 -24.66327 -23.86079 -23.22189 -22.03423 -21.59246 -21.21770 -19.34340 -19.11817 -19.01547 -18.62170 -18.23568 -18.04084 -17.17071 -16.97762 -16.67769 -16.24252 -16.09386 -15.74220 -15.43882 -15.34250 -14.98998 -14.78202 -14.71358 -14.37173 -14.24204 -14.10710 -13.82402 -13.78348 -13.63700 -13.33361 -12.97280 -12.89812 -12.52624 -12.39358 -12.27105 -11.90357 -11.82349 -11.69895 -11.51018 -11.40673 -11.13422 -10.99024 -10.86182 -10.14342 -9.71449 -9.01191 -8.36848 -6.46856 1.05329 1.12890 1.37029 1.40284 1.49864 1.73374 2.03543 2.29577 2.43684 2.65949 2.95765 3.07702 3.18595 3.23123 3.32131 3.66561 3.93928 3.95242 4.05012 4.13964 4.23927 4.44640 4.62158 4.62550 4.64445 4.81839 4.87040 4.96461 4.97216 5.07074 5.16285 5.20637 5.26336 5.50223 5.52824 5.82406 5.95031 6.04810 6.43561 6.45442 6.58702 6.73724 7.14174 7.16889 7.45760 8.80277 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.030798 B = 0.002133 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.919431 B =13124.890964 C =13620.074001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.158 4.158 3 C 0.137 3.863 4 H 0.104 0.896 5 N -0.715 5.715 6 C 0.715 3.285 7 O -0.585 6.585 8 N -0.641 5.641 9 C 0.286 3.714 10 C -0.289 4.289 11 C 0.057 3.943 12 N -0.346 5.346 13 C 0.240 3.760 14 C -0.546 4.546 15 H 0.026 0.974 16 C 0.013 3.987 17 N -0.943 5.943 18 Si 0.956 3.044 19 H -0.253 1.253 20 H -0.281 1.281 21 H -0.239 1.239 22 N -0.353 5.353 23 C 0.064 3.936 24 H 0.144 0.856 25 O -0.553 6.553 26 C 0.234 3.766 27 F -0.200 7.200 28 F -0.209 7.209 29 H 0.050 0.950 30 H 0.033 0.967 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.413 0.587 35 H 0.418 0.582 36 H 0.172 0.828 37 H 0.209 0.791 38 H 0.044 0.956 39 H 0.081 0.919 40 H 0.272 0.728 41 H 0.392 0.608 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.054 -20.170 16.249 28.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.196 4.196 3 C 0.032 3.968 4 H 0.122 0.878 5 N -0.372 5.372 6 C 0.415 3.585 7 O -0.462 6.462 8 N -0.292 5.292 9 C 0.030 3.970 10 C -0.320 4.320 11 C -0.090 4.090 12 N -0.129 5.129 13 C 0.120 3.880 14 C -0.584 4.584 15 H 0.045 0.955 16 C -0.185 4.185 17 N -0.582 5.582 18 Si 0.776 3.224 19 H -0.177 1.177 20 H -0.207 1.207 21 H -0.163 1.163 22 N -0.184 5.184 23 C 0.003 3.997 24 H 0.161 0.839 25 O -0.361 6.361 26 C 0.180 3.820 27 F -0.181 7.181 28 F -0.191 7.191 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.129 0.871 34 H 0.250 0.750 35 H 0.254 0.746 36 H 0.189 0.811 37 H 0.225 0.775 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.243 0.757 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 10.851 -19.128 15.581 26.952 hybrid contribution -0.170 -0.253 -0.480 0.569 sum 10.681 -19.381 15.101 26.791 Atomic orbital electron populations 1.21669 0.95811 1.00399 1.01599 1.22455 0.96603 0.95474 1.05079 1.21524 0.93314 0.94656 0.87337 0.87831 1.44754 1.14494 1.59921 1.18041 1.15650 0.83078 0.78059 0.81737 1.90851 1.51904 1.64472 1.38933 1.41452 1.13447 1.57634 1.16665 1.19119 0.87565 0.96670 0.93648 1.21729 0.93282 1.14115 1.02867 1.23256 1.02046 0.98053 0.85675 1.48467 1.09996 1.42731 1.11657 1.19861 0.88493 0.90292 0.89358 1.21240 1.01704 1.06906 1.28519 0.95544 1.25933 1.03611 0.93965 0.95032 1.70050 1.40413 1.14405 1.33307 0.85614 0.77837 0.80555 0.78362 1.17708 1.20696 1.16268 1.77303 0.96049 1.22119 1.22904 1.23351 0.92080 0.98321 0.85989 0.83856 1.86631 1.71917 1.26387 1.51153 1.22889 0.77382 0.80076 1.01695 1.92854 1.90175 1.37613 1.97501 1.93004 1.33334 1.95966 1.96764 0.93106 0.94825 0.93030 0.90675 0.87117 0.75025 0.74581 0.81121 0.77451 0.93808 0.90107 0.91909 0.75694 0.82849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.51 71.98 0.61 -1.94 16 2 C -0.16 -1.87 4.66 30.60 0.14 -1.72 16 3 C 0.14 1.60 2.13 44.99 0.10 1.70 16 4 H 0.10 1.34 7.58 -2.39 -0.02 1.32 16 5 N -0.72 -11.26 5.02 -457.82 -2.30 -13.56 16 6 C 0.72 18.02 7.10 179.06 1.27 19.29 16 7 O -0.58 -17.58 10.61 -4.02 -0.04 -17.62 16 8 N -0.64 -18.66 5.45 -321.24 -1.75 -20.41 16 9 C 0.29 11.09 8.11 133.31 1.08 12.17 16 10 C -0.29 -10.63 9.61 22.10 0.21 -10.42 16 11 C 0.06 2.09 11.44 83.52 0.96 3.04 16 12 N -0.35 -15.43 3.67 -351.84 -1.29 -16.72 16 13 C 0.24 11.08 5.33 85.63 0.46 11.53 16 14 C -0.55 -31.48 9.79 25.60 0.25 -31.23 16 15 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 16 C 0.01 0.75 5.47 84.66 0.46 1.21 16 17 N -0.94 -58.12 13.96 21.45 0.30 -57.82 16 18 Si 0.96 40.64 27.47 68.60 1.88 42.52 16 19 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.24 -9.19 6.54 99.48 0.65 -8.54 16 22 N -0.35 -16.26 12.42 -54.44 -0.68 -16.94 16 23 C 0.06 0.53 3.17 30.60 0.10 0.63 16 24 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 25 O -0.55 -5.82 12.96 -148.98 -1.93 -7.75 16 26 C 0.23 1.77 4.95 71.98 0.36 2.12 16 27 F -0.20 -1.92 13.54 44.97 0.61 -1.31 16 28 F -0.21 -2.80 17.33 44.97 0.78 -2.02 16 29 H 0.05 1.05 7.84 -2.39 -0.02 1.03 16 30 H 0.03 0.81 5.65 -2.39 -0.01 0.80 16 31 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.07 0.77 7.00 -2.39 -0.02 0.76 16 33 H 0.11 1.04 5.10 -2.39 -0.01 1.03 16 34 H 0.41 5.05 8.40 -92.71 -0.78 4.27 16 35 H 0.42 10.15 8.84 -92.71 -0.82 9.33 16 36 H 0.17 6.00 5.91 -2.91 -0.02 5.98 16 37 H 0.21 5.52 8.06 -2.91 -0.02 5.49 16 38 H 0.04 1.99 7.20 -2.39 -0.02 1.97 16 39 H 0.08 3.20 7.50 -2.39 -0.02 3.18 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.39 2.59 6.82 -74.06 -0.51 2.09 16 42 H 0.15 0.22 8.14 -2.39 -0.02 0.20 16 Total: -1.00 -79.11 350.12 0.53 -78.58 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: -1.05 Total: 26.67 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 5.99 Total: 6.38 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -5.72 Total: -125.45 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -1.97 Total: -25.37 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 1.39 Total: -3.33 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 1.88 Total: 42.52 kcal Total: -79.11 0.53 -78.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414401338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.116 kcal (2) G-P(sol) polarization free energy of solvation -79.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds