Wall clock time and date at job start Tue Mar 31 2020 17:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47299 * 2 1 4 4 C 1.50693 * 109.47314 * 120.00086 * 2 1 3 5 5 O 1.21301 * 120.00222 * 270.00551 * 4 2 1 6 6 C 1.46832 * 120.00141 * 89.99934 * 4 2 1 7 7 C 1.40068 * 120.09788 * 359.72317 * 6 4 2 8 8 C 1.36597 * 119.89287 * 179.74227 * 7 6 4 9 9 C 1.39226 * 120.10478 * 0.55955 * 8 7 6 10 10 N 1.39300 * 119.89688 * 179.71534 * 9 8 7 11 11 C 1.34779 * 119.99813 * 213.55779 * 10 9 8 12 12 O 1.21586 * 119.99994 * 5.33159 * 11 10 9 13 13 N 1.34773 * 119.99938 * 185.32354 * 11 10 9 14 14 C 1.47066 * 136.05925 * 359.63620 * 13 11 10 15 15 C 1.53239 * 88.08327 * 207.19925 * 14 13 11 16 16 O 1.42897 * 114.01557 * 87.71550 * 15 14 13 17 17 C 1.50703 * 114.32810 * 220.47059 * 15 14 13 18 18 H 1.07997 * 120.00035 * 93.75798 * 17 15 14 19 19 C 1.37875 * 119.99628 * 273.76102 * 17 15 14 20 20 N 1.31512 * 120.00204 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 119.99851 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47059 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47231 * 120.00043 * 21 19 17 24 24 H 1.48498 * 109.47422 * 240.00292 * 21 19 17 25 25 C 1.47070 * 136.05564 * 179.97438 * 13 11 10 26 26 C 1.39222 * 120.19919 * 359.69574 * 9 8 7 27 27 C 1.36597 * 120.10249 * 0.02562 * 26 9 8 28 28 H 1.08997 * 109.46852 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47279 * 300.00318 * 1 2 3 30 30 H 1.09004 * 109.46944 * 59.99924 * 1 2 3 31 31 H 1.09001 * 109.47344 * 240.00260 * 2 1 3 32 32 H 1.09001 * 109.47528 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47185 * 299.99929 * 3 2 1 34 34 H 1.09001 * 109.47181 * 59.99624 * 3 2 1 35 35 H 1.07993 * 120.05181 * 0.02562 * 7 6 4 36 36 H 1.08001 * 119.94715 * 180.25373 * 8 7 6 37 37 H 0.96996 * 120.00527 * 33.57081 * 10 9 8 38 38 H 1.08997 * 113.46704 * 321.93654 * 14 13 11 39 39 H 1.08997 * 113.46573 * 92.37483 * 14 13 11 40 40 H 0.96700 * 114.00441 * 86.38783 * 16 15 14 41 41 H 0.97007 * 119.99785 * 179.97438 * 20 19 17 42 42 H 1.08995 * 113.47191 * 267.62950 * 25 13 11 43 43 H 1.09003 * 113.46646 * 38.07470 * 25 13 11 44 44 H 1.08002 * 119.94729 * 179.97438 * 26 9 8 45 45 H 1.08003 * 120.04731 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.2345 -0.0866 2.2509 6 6 2.2771 -2.1577 1.1940 7 6 2.0388 -2.8811 0.0185 8 6 2.2729 -4.2265 -0.0122 9 6 2.7366 -4.8808 1.1259 10 7 2.9682 -6.2540 1.0915 11 6 2.7525 -7.0015 2.1920 12 8 2.2646 -6.4960 3.1843 13 7 3.0776 -8.3095 2.1925 14 6 3.6577 -9.2568 1.2287 15 6 2.9115 -10.3780 1.9598 16 8 1.5820 -10.5978 1.4846 17 6 3.7062 -11.6478 2.1248 18 1 4.2732 -11.8164 3.0284 19 6 3.7092 -12.5942 1.1222 20 7 3.0192 -12.3886 0.0217 21 14 4.6948 -14.1679 1.3264 22 1 5.3782 -14.1564 2.6447 23 1 3.7818 -15.3368 1.2530 24 1 5.7073 -14.2619 0.2442 25 6 3.0027 -9.4189 3.1551 26 6 2.9697 -4.1667 2.2981 27 6 2.7438 -2.8201 2.3364 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6749 -2.3751 -0.8635 36 1 2.0934 -4.7844 -0.9194 37 1 3.2849 -6.6721 0.2756 38 1 3.3124 -9.1022 0.2065 39 1 4.7423 -9.3389 1.3000 40 1 1.5282 -11.2023 0.7318 41 1 3.0217 -13.0544 -0.6838 42 1 3.9111 -9.5446 3.7442 43 1 2.1013 -9.4019 3.7677 44 1 3.3290 -4.6785 3.1787 45 1 2.9246 -2.2671 3.2464 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001476589347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:37 Heat of formation + Delta-G solvation = -50.671909 kcal Electronic energy + Delta-G solvation = -27593.213184 eV Core-core repulsion = 23577.299541 eV Total energy + Delta-G solvation = -4015.913643 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -40.72729 -39.98622 -38.82525 -37.46799 -34.85405 -34.49651 -34.13742 -32.28614 -31.21474 -30.39561 -28.43177 -27.46555 -25.68675 -25.25307 -24.52742 -23.19868 -21.96005 -20.71127 -19.45229 -19.02713 -18.07106 -17.72736 -17.06671 -16.84350 -15.81508 -15.37080 -15.36001 -15.08515 -15.00060 -14.56787 -14.34191 -14.18983 -13.96685 -13.63524 -13.30785 -13.10021 -12.98828 -12.78784 -12.76863 -12.57161 -12.43728 -12.32514 -12.11044 -11.65702 -11.47855 -11.42214 -11.16869 -11.12379 -11.08191 -10.55810 -10.36920 -10.32817 -10.04033 -9.67326 -9.41620 -9.12933 -8.88314 -8.55377 -8.24087 -7.86286 -6.49911 -4.60260 0.56111 1.37169 2.27715 2.73480 3.07491 3.17815 3.21374 3.40693 3.81606 3.84611 4.07417 4.16990 4.49881 4.60189 4.72930 4.74311 4.80787 4.93929 5.19836 5.23588 5.29294 5.36234 5.42876 5.47312 5.48480 5.51378 5.66570 5.75883 5.83131 5.89295 5.90429 5.99834 6.07554 6.18554 6.27535 6.33365 6.35302 6.44314 6.49869 6.53569 6.95822 6.97567 7.37787 7.43154 7.54097 7.70228 8.40972 8.45133 8.81656 9.11724 9.38924 10.56945 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033790 B = 0.002045 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.459570 B =13685.426699 C =13995.376004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.141 4.141 3 C -0.140 4.140 4 C 0.406 3.594 5 O -0.460 6.460 6 C -0.208 4.208 7 C -0.047 4.047 8 C -0.171 4.171 9 C 0.223 3.777 10 N -0.686 5.686 11 C 0.728 3.272 12 O -0.586 6.586 13 N -0.650 5.650 14 C 0.070 3.930 15 C 0.241 3.759 16 O -0.571 6.571 17 C -0.533 4.533 18 H 0.074 0.926 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.910 3.090 22 H -0.269 1.269 23 H -0.280 1.280 24 H -0.281 1.281 25 C 0.128 3.872 26 C -0.141 4.141 27 C -0.035 4.035 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.409 0.591 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.394 0.606 41 H 0.274 0.726 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.143 0.857 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.029 17.669 -5.728 18.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C -0.198 4.198 4 C 0.284 3.716 5 O -0.336 6.336 6 C -0.210 4.210 7 C -0.066 4.066 8 C -0.192 4.192 9 C 0.124 3.876 10 N -0.331 5.331 11 C 0.432 3.568 12 O -0.464 6.464 13 N -0.386 5.386 14 C -0.053 4.053 15 C 0.199 3.801 16 O -0.384 6.384 17 C -0.571 4.571 18 H 0.093 0.907 19 C -0.131 4.131 20 N -0.539 5.539 21 Si 0.737 3.263 22 H -0.193 1.193 23 H -0.206 1.206 24 H -0.207 1.207 25 C 0.006 3.994 26 C -0.162 4.162 27 C -0.054 4.054 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.245 0.755 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.251 0.749 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.161 0.839 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.504 18.773 -4.132 19.229 hybrid contribution 0.839 -1.569 -1.112 2.098 sum 0.335 17.203 -5.244 17.988 Atomic orbital electron populations 1.21719 0.92398 1.02868 1.02872 1.21614 0.98096 0.97952 0.98312 1.21708 1.01229 0.94279 1.02552 1.22330 0.72786 0.87778 0.88688 1.90502 1.40720 1.68775 1.33610 1.20349 1.09864 0.95121 0.95713 1.20916 0.95508 0.93283 0.96864 1.20622 1.04597 0.95335 0.98692 1.17881 0.92732 0.82199 0.94763 1.42641 1.69617 1.05629 1.15230 1.15234 0.79247 0.79728 0.82634 1.90895 1.50914 1.71183 1.33445 1.48848 1.63523 1.05220 1.21007 1.24216 0.99094 0.87980 0.94005 1.19497 0.81903 0.90446 0.88293 1.86057 1.26619 1.70601 1.55133 1.21451 1.29362 1.02272 1.04012 0.90738 1.25089 0.94856 0.98808 0.94348 1.69265 1.41387 1.36194 1.07037 0.86239 0.79579 0.81959 0.78533 1.19348 1.20572 1.20651 1.23286 1.01156 0.80580 0.94395 1.20996 1.02807 0.93578 0.98770 1.21010 0.93301 0.93643 0.97419 0.91770 0.92035 0.91355 0.88589 0.92472 0.91927 0.91646 0.84914 0.85040 0.75469 0.91974 0.89943 0.74919 0.91564 0.89512 0.91320 0.83948 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.18 37.16 0.34 -0.65 16 2 C -0.14 -1.12 2.68 -91.78 -0.25 -1.37 16 3 C -0.14 -1.06 8.79 37.16 0.33 -0.74 16 4 C 0.41 4.64 6.16 -30.84 -0.19 4.45 16 5 O -0.46 -6.61 16.16 5.54 0.09 -6.52 16 6 C -0.21 -2.49 5.87 -105.05 -0.62 -3.11 16 7 C -0.05 -0.47 9.31 -39.49 -0.37 -0.84 16 8 C -0.17 -1.95 9.90 -39.81 -0.39 -2.34 16 9 C 0.22 3.21 6.27 -83.73 -0.53 2.69 16 10 N -0.69 -10.67 5.32 -14.21 -0.08 -10.75 16 11 C 0.73 14.31 8.52 -86.92 -0.74 13.57 16 12 O -0.59 -13.10 14.79 5.29 0.08 -13.02 16 13 N -0.65 -13.01 3.69 -191.16 -0.71 -13.72 16 14 C 0.07 1.39 7.69 -8.64 -0.07 1.32 16 15 C 0.24 5.48 1.57 -91.38 -0.14 5.33 16 16 O -0.57 -14.17 13.53 -35.23 -0.48 -14.65 16 17 C -0.53 -12.68 8.69 -34.44 -0.30 -12.98 16 18 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 19 C 0.07 1.70 5.40 -17.82 -0.10 1.60 16 20 N -0.90 -21.74 11.01 55.43 0.61 -21.13 16 21 Si 0.91 18.65 29.54 -169.99 -5.02 13.63 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 25 C 0.13 2.67 8.04 -8.49 -0.07 2.60 16 26 C -0.14 -2.14 8.58 -39.81 -0.34 -2.48 16 27 C -0.03 -0.47 9.54 -39.49 -0.38 -0.85 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.10 0.58 6.47 -51.93 -0.34 0.25 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.57 7.86 -51.93 -0.41 0.16 16 35 H 0.13 0.90 6.35 -52.49 -0.33 0.57 16 36 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.41 5.43 8.54 -40.82 -0.35 5.09 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 40 H 0.39 9.88 6.33 45.56 0.29 10.17 16 41 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 42 H 0.09 1.63 8.10 -51.93 -0.42 1.21 16 43 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 44 H 0.14 2.41 6.41 -52.49 -0.34 2.07 16 45 H 0.13 1.75 7.64 -52.48 -0.40 1.35 16 LS Contribution 378.51 15.07 5.70 5.70 Total: -1.00 -28.98 378.51 -9.24 -38.22 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -5.64 Total: 16.03 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: -3.81 Total: 6.20 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.17 Total: -45.60 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.31 Total: -34.19 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -28.98 -9.24 -38.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476589347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.452 kcal (2) G-P(sol) polarization free energy of solvation -28.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds