Wall clock time and date at job start Tue Mar 31 2020 17:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47299 * 2 1 4 4 C 1.50693 * 109.47314 * 120.00086 * 2 1 3 5 5 O 1.21301 * 120.00222 * 270.00551 * 4 2 1 6 6 C 1.46832 * 120.00141 * 89.99934 * 4 2 1 7 7 C 1.40068 * 120.09788 * 359.72317 * 6 4 2 8 8 C 1.36597 * 119.89287 * 179.74227 * 7 6 4 9 9 C 1.39226 * 120.10478 * 0.55955 * 8 7 6 10 10 N 1.39300 * 119.89688 * 179.71534 * 9 8 7 11 11 C 1.34779 * 119.99813 * 213.55779 * 10 9 8 12 12 O 1.21586 * 119.99994 * 5.33159 * 11 10 9 13 13 N 1.34773 * 119.99938 * 185.32354 * 11 10 9 14 14 C 1.47066 * 136.05925 * 359.63620 * 13 11 10 15 15 C 1.53239 * 88.08327 * 207.19925 * 14 13 11 16 16 O 1.42897 * 114.01557 * 87.71550 * 15 14 13 17 17 C 1.50703 * 114.32810 * 220.47059 * 15 14 13 18 18 H 1.07997 * 120.00035 * 93.75798 * 17 15 14 19 19 C 1.37875 * 119.99628 * 273.76102 * 17 15 14 20 20 N 1.31512 * 120.00204 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 119.99851 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47059 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47231 * 120.00043 * 21 19 17 24 24 H 1.48498 * 109.47422 * 240.00292 * 21 19 17 25 25 C 1.47070 * 136.05564 * 179.97438 * 13 11 10 26 26 C 1.39222 * 120.19919 * 359.69574 * 9 8 7 27 27 C 1.36597 * 120.10249 * 0.02562 * 26 9 8 28 28 H 1.08997 * 109.46852 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47279 * 300.00318 * 1 2 3 30 30 H 1.09004 * 109.46944 * 59.99924 * 1 2 3 31 31 H 1.09001 * 109.47344 * 240.00260 * 2 1 3 32 32 H 1.09001 * 109.47528 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47185 * 299.99929 * 3 2 1 34 34 H 1.09001 * 109.47181 * 59.99624 * 3 2 1 35 35 H 1.07993 * 120.05181 * 0.02562 * 7 6 4 36 36 H 1.08001 * 119.94715 * 180.25373 * 8 7 6 37 37 H 0.96996 * 120.00527 * 33.57081 * 10 9 8 38 38 H 1.08997 * 113.46704 * 321.93654 * 14 13 11 39 39 H 1.08997 * 113.46573 * 92.37483 * 14 13 11 40 40 H 0.96700 * 114.00441 * 86.38783 * 16 15 14 41 41 H 0.97007 * 119.99785 * 179.97438 * 20 19 17 42 42 H 1.08995 * 113.47191 * 267.62950 * 25 13 11 43 43 H 1.09003 * 113.46646 * 38.07470 * 25 13 11 44 44 H 1.08002 * 119.94729 * 179.97438 * 26 9 8 45 45 H 1.08003 * 120.04731 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.2345 -0.0866 2.2509 6 6 2.2771 -2.1577 1.1940 7 6 2.0388 -2.8811 0.0185 8 6 2.2729 -4.2265 -0.0122 9 6 2.7366 -4.8808 1.1259 10 7 2.9682 -6.2540 1.0915 11 6 2.7525 -7.0015 2.1920 12 8 2.2646 -6.4960 3.1843 13 7 3.0776 -8.3095 2.1925 14 6 3.6577 -9.2568 1.2287 15 6 2.9115 -10.3780 1.9598 16 8 1.5820 -10.5978 1.4846 17 6 3.7062 -11.6478 2.1248 18 1 4.2732 -11.8164 3.0284 19 6 3.7092 -12.5942 1.1222 20 7 3.0192 -12.3886 0.0217 21 14 4.6948 -14.1679 1.3264 22 1 5.3782 -14.1564 2.6447 23 1 3.7818 -15.3368 1.2530 24 1 5.7073 -14.2619 0.2442 25 6 3.0027 -9.4189 3.1551 26 6 2.9697 -4.1667 2.2981 27 6 2.7438 -2.8201 2.3364 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6749 -2.3751 -0.8635 36 1 2.0934 -4.7844 -0.9194 37 1 3.2849 -6.6721 0.2756 38 1 3.3124 -9.1022 0.2065 39 1 4.7423 -9.3389 1.3000 40 1 1.5282 -11.2023 0.7318 41 1 3.0217 -13.0544 -0.6838 42 1 3.9111 -9.5446 3.7442 43 1 2.1013 -9.4019 3.7677 44 1 3.3290 -4.6785 3.1787 45 1 2.9246 -2.2671 3.2464 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001476589347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:35 Heat of formation + Delta-G solvation = -69.060261 kcal Electronic energy + Delta-G solvation = -27594.010563 eV Core-core repulsion = 23577.299541 eV Total energy + Delta-G solvation = -4016.711022 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.00920 -41.15155 -40.16266 -38.81780 -35.94028 -35.90778 -35.45002 -34.12923 -32.20360 -31.62417 -29.92401 -28.02562 -27.29172 -26.88181 -25.58325 -24.25671 -22.90253 -22.19290 -20.73359 -20.15220 -19.60556 -19.08978 -18.48108 -17.96538 -17.12454 -16.95422 -16.62702 -16.54596 -15.92896 -15.89740 -15.61572 -15.31474 -14.99294 -14.88024 -14.58358 -14.47666 -14.36792 -13.90679 -13.77151 -13.68397 -13.54002 -13.42063 -13.19546 -12.91428 -12.81722 -12.76057 -12.35910 -12.23632 -12.16332 -12.04016 -11.80130 -11.73648 -11.43824 -11.13146 -10.69724 -10.56463 -10.29173 -10.12288 -9.75134 -9.14873 -8.28675 -6.44896 -0.44778 0.39023 1.23447 1.39526 1.46050 1.52410 1.61612 1.97342 2.39851 2.72919 2.79569 2.95807 3.00274 3.66849 3.74041 3.86456 3.89475 4.08201 4.13625 4.17713 4.24085 4.33818 4.40286 4.46142 4.59463 4.62472 4.66273 4.78702 4.81401 4.87491 4.89238 4.93538 4.95790 5.07684 5.14083 5.19698 5.24833 5.28476 5.33289 5.36403 5.43193 5.72909 5.87391 5.88882 6.07983 6.55302 6.61633 6.88665 7.27484 7.33836 7.48644 8.77765 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033790 B = 0.002045 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.459570 B =13685.426699 C =13995.376004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C -0.141 4.141 4 C 0.405 3.595 5 O -0.498 6.498 6 C -0.210 4.210 7 C -0.029 4.029 8 C -0.158 4.158 9 C 0.196 3.804 10 N -0.672 5.672 11 C 0.724 3.276 12 O -0.620 6.620 13 N -0.652 5.652 14 C 0.087 3.913 15 C 0.219 3.781 16 O -0.586 6.586 17 C -0.549 4.549 18 H 0.075 0.925 19 C 0.033 3.967 20 N -0.916 5.916 21 Si 0.969 3.031 22 H -0.267 1.267 23 H -0.283 1.283 24 H -0.276 1.276 25 C 0.128 3.872 26 C -0.159 4.159 27 C -0.049 4.049 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.127 0.873 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.180 0.820 36 H 0.163 0.837 37 H 0.421 0.579 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.390 0.610 41 H 0.277 0.723 42 H 0.105 0.895 43 H 0.054 0.946 44 H 0.114 0.886 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.063 18.540 -8.641 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C -0.198 4.198 4 C 0.285 3.715 5 O -0.376 6.376 6 C -0.212 4.212 7 C -0.047 4.047 8 C -0.179 4.179 9 C 0.099 3.901 10 N -0.319 5.319 11 C 0.428 3.572 12 O -0.501 6.501 13 N -0.388 5.388 14 C -0.036 4.036 15 C 0.178 3.822 16 O -0.399 6.399 17 C -0.587 4.587 18 H 0.093 0.907 19 C -0.167 4.167 20 N -0.557 5.557 21 Si 0.795 3.205 22 H -0.192 1.192 23 H -0.209 1.209 24 H -0.202 1.202 25 C 0.005 3.995 26 C -0.179 4.179 27 C -0.068 4.068 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.145 0.855 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.197 0.803 36 H 0.181 0.819 37 H 0.260 0.740 38 H 0.085 0.915 39 H 0.114 0.886 40 H 0.246 0.754 41 H 0.087 0.913 42 H 0.123 0.877 43 H 0.072 0.928 44 H 0.132 0.868 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.401 19.672 -7.079 20.911 hybrid contribution 0.767 -1.738 -0.189 1.909 sum 0.366 17.934 -7.269 19.354 Atomic orbital electron populations 1.21759 0.91425 1.03247 1.03401 1.21697 0.98681 0.97889 0.97120 1.21731 1.00987 0.94186 1.02924 1.22920 0.71585 0.87451 0.89498 1.90498 1.42378 1.69355 1.35383 1.20635 1.08957 0.95859 0.95779 1.21371 0.93363 0.92659 0.97329 1.20975 1.02626 0.95902 0.98363 1.18147 0.94621 0.81551 0.95786 1.42387 1.69218 1.05909 1.14346 1.15406 0.78942 0.79614 0.83254 1.90872 1.52396 1.71744 1.35083 1.48784 1.63859 1.05451 1.20749 1.23995 0.99370 0.86396 0.93811 1.19762 0.81355 0.91234 0.89859 1.86043 1.28237 1.70555 1.55093 1.21660 1.29692 1.03141 1.04246 0.90664 1.25737 0.95683 1.01196 0.94131 1.69317 1.41969 1.36962 1.07442 0.85324 0.78221 0.78518 0.78463 1.19156 1.20945 1.20199 1.23288 1.01383 0.80735 0.94070 1.20818 1.04334 0.94246 0.98549 1.21005 0.94311 0.93189 0.98324 0.91469 0.93625 0.88802 0.85483 0.92931 0.89348 0.93485 0.80281 0.81906 0.74047 0.91473 0.88643 0.75415 0.91321 0.87696 0.92779 0.86832 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.18 71.98 0.66 -0.86 16 2 C -0.14 -1.70 2.68 -11.54 -0.03 -1.73 16 3 C -0.14 -1.79 8.79 71.98 0.63 -1.16 16 4 C 0.40 8.67 6.16 27.93 0.17 8.85 16 5 O -0.50 -14.45 16.16 -3.09 -0.05 -14.50 16 6 C -0.21 -4.70 5.87 -20.14 -0.12 -4.82 16 7 C -0.03 -0.47 9.31 22.33 0.21 -0.26 16 8 C -0.16 -3.08 9.90 22.12 0.22 -2.86 16 9 C 0.20 5.50 6.27 38.43 0.24 5.74 16 10 N -0.67 -20.50 5.32 -317.13 -1.69 -22.18 16 11 C 0.72 28.79 8.52 179.05 1.53 30.32 16 12 O -0.62 -28.72 14.79 -3.99 -0.06 -28.78 16 13 N -0.65 -26.18 3.69 -877.45 -3.24 -29.42 16 14 C 0.09 3.39 7.69 83.09 0.64 4.03 16 15 C 0.22 10.00 1.57 -11.28 -0.02 9.99 16 16 O -0.59 -29.46 13.53 -148.98 -2.02 -31.47 16 17 C -0.55 -26.00 8.69 25.60 0.22 -25.77 16 18 H 0.08 3.46 7.81 -2.91 -0.02 3.44 16 19 C 0.03 1.55 5.40 84.65 0.46 2.01 16 20 N -0.92 -43.92 11.01 21.45 0.24 -43.69 16 21 Si 0.97 37.67 29.54 68.60 2.03 39.70 16 22 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 23 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.28 -10.49 7.11 99.48 0.71 -9.79 16 25 C 0.13 5.39 8.04 83.19 0.67 6.06 16 26 C -0.16 -5.00 8.58 22.12 0.19 -4.81 16 27 C -0.05 -1.39 9.54 22.33 0.21 -1.17 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.13 0.83 6.47 -2.39 -0.02 0.81 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.05 0.77 7.86 -2.39 -0.02 0.75 16 35 H 0.18 1.27 6.35 -2.91 -0.02 1.25 16 36 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 37 H 0.42 10.53 8.54 -92.71 -0.79 9.74 16 38 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.10 3.47 8.10 -2.39 -0.02 3.45 16 40 H 0.39 19.79 6.33 -74.06 -0.47 19.33 16 41 H 0.28 12.54 8.31 -92.70 -0.77 11.77 16 42 H 0.11 3.96 8.10 -2.39 -0.02 3.94 16 43 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.11 4.18 6.41 -2.91 -0.02 4.16 16 45 H 0.12 3.57 7.64 -2.91 -0.02 3.54 16 Total: -1.00 -64.95 378.51 0.87 -64.08 By element: Atomic # 1 Polarization: 42.93 SS G_CDS: -0.22 Total: 42.71 kcal Atomic # 6 Polarization: 17.66 SS G_CDS: 5.88 Total: 23.54 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -4.69 Total: -95.29 kcal Atomic # 8 Polarization: -72.62 SS G_CDS: -2.13 Total: -74.75 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.70 kcal Total: -64.95 0.87 -64.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476589347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.979 kcal (2) G-P(sol) polarization free energy of solvation -64.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds