Wall clock time and date at job start Tue Mar 31 2020 17:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52991 * 109.46944 * 208.11412 * 3 2 1 5 5 O 1.42904 * 109.46963 * 180.02562 * 4 3 2 6 6 C 1.35716 * 116.99792 * 180.02562 * 5 4 3 7 7 C 1.38997 * 119.90697 * 180.02562 * 6 5 4 8 8 C 1.37703 * 120.08660 * 180.02562 * 7 6 5 9 9 C 1.39742 * 119.91128 * 359.97438 * 8 7 6 10 10 C 1.47598 * 120.08861 * 180.02562 * 9 8 7 11 11 O 1.21583 * 119.99933 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99934 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99861 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46985 * 180.02562 * 13 12 10 15 15 H 1.09005 * 109.47159 * 64.99675 * 14 13 12 16 16 C 1.52999 * 109.47264 * 184.99674 * 14 13 12 17 17 O 1.42903 * 109.46807 * 54.99742 * 16 14 13 18 18 N 1.46498 * 109.47167 * 304.99505 * 14 13 12 19 19 C 1.36935 * 120.00239 * 154.99975 * 18 14 13 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 14 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 14 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72253 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72375 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72186 * 23 21 19 27 27 C 1.39732 * 119.82073 * 0.27431 * 9 8 7 28 28 C 1.37703 * 119.91390 * 359.46918 * 27 9 8 29 29 H 4.44641 * 5.63313 * 180.02562 * 4 1 2 30 30 H 1.09002 * 109.46769 * 88.11450 * 3 2 1 31 31 H 1.09004 * 109.47014 * 328.11567 * 3 2 1 32 32 H 1.09002 * 109.47357 * 60.00398 * 4 3 2 33 33 H 1.08998 * 109.47737 * 300.00147 * 4 3 2 34 34 H 1.07997 * 119.96030 * 0.02562 * 7 6 5 35 35 H 1.08001 * 120.04808 * 179.97438 * 8 7 6 36 36 H 0.96994 * 120.00036 * 359.97438 * 12 10 9 37 37 H 1.08996 * 109.47079 * 59.99484 * 13 12 10 38 38 H 1.09001 * 109.46574 * 299.99257 * 13 12 10 39 39 H 1.08997 * 109.47298 * 174.99526 * 16 14 13 40 40 H 1.08997 * 109.46949 * 294.99894 * 16 14 13 41 41 H 0.96702 * 113.99897 * 179.97438 * 17 16 14 42 42 H 0.97004 * 119.99747 * 335.00715 * 18 14 13 43 43 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 44 44 H 1.08001 * 120.04032 * 179.72789 * 27 9 8 45 45 H 1.08002 * 119.95596 * 180.25457 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1554 1.2731 0.6797 5 8 4.5845 1.2741 0.6792 6 6 5.2001 2.3407 1.2494 7 6 6.5882 2.4040 1.2817 8 6 7.2167 3.4843 1.8599 9 6 6.4570 4.5180 2.4141 10 6 7.1265 5.6780 3.0342 11 8 8.3407 5.7349 3.0638 12 7 6.3921 6.6741 3.5677 13 6 7.0567 7.8258 4.1828 14 6 6.0025 8.8028 4.7071 15 1 5.4386 8.3314 5.5121 16 6 6.6924 10.0615 5.2369 17 8 7.5239 10.6148 4.2149 18 7 5.0904 9.1668 3.6201 19 6 3.8180 9.5852 3.9050 20 1 3.4871 9.6474 4.9312 21 6 2.9535 9.9296 2.8750 22 7 3.3586 9.8591 1.6247 23 14 1.2181 10.5011 3.2637 24 1 0.5046 10.8127 1.9992 25 1 0.4939 9.4264 3.9890 26 1 1.2763 11.7185 4.1122 27 6 5.0617 4.4479 2.3842 28 6 4.4408 3.3668 1.7995 29 1 -1.0501 -0.0004 0.0000 30 1 3.0094 -0.0330 -1.0271 31 1 3.0098 -0.8718 0.5428 32 1 2.7921 1.3068 1.7069 33 1 2.7917 2.1456 0.1370 34 1 7.1747 1.6050 0.8528 35 1 8.2954 3.5327 1.8850 36 1 5.4235 6.6289 3.5438 37 1 7.6786 8.3257 3.4402 38 1 7.6802 7.4863 5.0099 39 1 5.9391 10.7934 5.5283 40 1 7.3029 9.8042 6.1024 41 1 7.9933 11.4173 4.4813 42 1 5.3877 9.1112 2.6984 43 1 4.2599 9.5627 1.4227 44 1 4.4711 5.2427 2.8153 45 1 3.3624 3.3139 1.7723 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485995479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:39 Heat of formation + Delta-G solvation = -32.851258 kcal Electronic energy + Delta-G solvation = -27289.836936 eV Core-core repulsion = 23274.696054 eV Total energy + Delta-G solvation = -4015.140882 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -40.51548 -39.40171 -37.54220 -36.96839 -35.02618 -34.89343 -33.76096 -31.79624 -31.09464 -30.84949 -29.73303 -27.98962 -25.60020 -24.65473 -23.54352 -23.18306 -21.99985 -20.31252 -20.07364 -18.93266 -18.12658 -17.74958 -17.30505 -16.73197 -16.58552 -16.38379 -15.53381 -15.10144 -14.94356 -14.62018 -14.27873 -14.19460 -13.98691 -13.89677 -13.72824 -13.61474 -13.41336 -13.28916 -13.08244 -12.60432 -12.40109 -12.26680 -11.84842 -11.49659 -11.16358 -11.01793 -10.85923 -10.79195 -10.67599 -10.49434 -10.45922 -10.05582 -9.69692 -9.50618 -9.21344 -9.16523 -9.01178 -8.71511 -8.30613 -7.13198 -6.16276 -3.18043 0.90628 1.25453 2.22112 2.44645 2.95343 3.01286 3.45332 3.48133 3.53554 3.66545 3.91755 4.09250 4.49703 4.55495 4.58699 4.67413 4.78215 4.84810 4.90469 4.97526 5.14536 5.26061 5.32420 5.37525 5.40767 5.43799 5.52353 5.53295 5.62426 5.81993 5.87212 5.94599 5.94997 6.03129 6.17622 6.26354 6.36840 6.39327 6.53642 6.65384 6.84715 7.12368 7.20391 7.70713 7.89427 8.12711 8.53466 8.69347 9.13872 10.00715 10.16468 11.31183 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008883 B = 0.003033 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3151.432238 B = 9228.685796 C =12019.569827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.195 4.195 3 C -0.007 4.007 4 C 0.061 3.939 5 O -0.312 6.312 6 C 0.151 3.849 7 C -0.162 4.162 8 C -0.022 4.022 9 C -0.168 4.168 10 C 0.557 3.443 11 O -0.553 6.553 12 N -0.710 5.710 13 C 0.118 3.882 14 C 0.171 3.829 15 H 0.067 0.933 16 C 0.060 3.940 17 O -0.562 6.562 18 N -0.724 5.724 19 C -0.340 4.340 20 H 0.064 0.936 21 C -0.039 4.039 22 N -0.937 5.937 23 Si 1.078 2.922 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.296 1.296 27 C -0.038 4.038 28 C -0.214 4.214 29 H 0.221 0.779 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.407 0.593 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.028 0.972 41 H 0.365 0.635 42 H 0.372 0.628 43 H 0.257 0.743 44 H 0.135 0.865 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.781 -17.228 1.408 17.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.195 4.195 3 C -0.044 4.044 4 C -0.014 4.014 5 O -0.226 6.226 6 C 0.106 3.894 7 C -0.181 4.181 8 C -0.041 4.041 9 C -0.171 4.171 10 C 0.345 3.655 11 O -0.433 6.433 12 N -0.362 5.362 13 C -0.007 4.007 14 C 0.060 3.940 15 H 0.084 0.916 16 C -0.021 4.021 17 O -0.365 6.365 18 N -0.367 5.367 19 C -0.471 4.471 20 H 0.082 0.918 21 C -0.238 4.238 22 N -0.582 5.582 23 Si 0.909 3.091 24 H -0.211 1.211 25 H -0.223 1.223 26 H -0.223 1.223 27 C -0.057 4.057 28 C -0.233 4.233 29 H 0.237 0.763 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.154 0.846 35 H 0.160 0.840 36 H 0.244 0.756 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.046 0.954 41 H 0.210 0.790 42 H 0.206 0.794 43 H 0.069 0.931 44 H 0.153 0.847 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.070 -17.311 0.553 17.320 hybrid contribution 0.756 0.311 0.941 1.246 sum 0.685 -16.999 1.494 17.078 Atomic orbital electron populations 1.25004 0.95993 0.99291 1.00229 1.22584 0.93955 1.01713 1.01227 1.18416 0.84919 0.97974 1.03074 1.22735 0.78418 0.98740 1.01517 1.85942 1.21028 1.40875 1.74739 1.19189 0.92272 0.86117 0.91863 1.20351 0.91056 1.00775 1.05913 1.21060 1.00632 0.90463 0.91936 1.19930 0.93605 0.97321 1.06275 1.18126 0.86826 0.82428 0.78157 1.90733 1.13569 1.79735 1.59261 1.45929 1.11056 1.20510 1.58717 1.21578 0.95475 0.85642 0.97974 1.20536 0.89845 0.91020 0.92642 0.91557 1.23008 0.92405 0.97725 0.89003 1.86551 1.63413 1.45313 1.41263 1.42375 1.10905 1.80235 1.03235 1.20009 0.89629 1.42917 0.94519 0.91809 1.25733 1.04690 1.00413 0.92954 1.70861 1.19824 1.49416 1.18078 0.83270 0.74946 0.75802 0.75066 1.21057 1.22282 1.22339 1.21249 0.93506 0.96626 0.94321 1.21196 1.00431 0.95984 1.05684 0.76261 0.88308 0.88376 0.91182 0.91031 0.84577 0.83976 0.75572 0.90563 0.91888 0.93254 0.95371 0.79031 0.79432 0.93110 0.84747 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.44 19.25 29.55 0.57 -0.87 16 2 C -0.19 -1.66 13.34 -37.12 -0.50 -2.15 16 3 C -0.01 -0.05 6.07 -29.52 -0.18 -0.23 16 4 C 0.06 0.52 4.69 37.15 0.17 0.70 16 5 O -0.31 -3.33 10.12 -18.85 -0.19 -3.52 16 6 C 0.15 1.82 6.70 -39.02 -0.26 1.56 16 7 C -0.16 -1.92 9.97 -39.50 -0.39 -2.32 16 8 C -0.02 -0.30 9.58 -39.22 -0.38 -0.67 16 9 C -0.17 -2.56 5.87 -104.96 -0.62 -3.18 16 10 C 0.56 9.95 7.76 -12.44 -0.10 9.85 16 11 O -0.55 -11.28 16.34 5.29 0.09 -11.19 16 12 N -0.71 -12.49 5.34 -61.33 -0.33 -12.81 16 13 C 0.12 2.13 5.12 -4.04 -0.02 2.11 16 14 C 0.17 3.26 2.84 -67.93 -0.19 3.07 16 15 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 16 C 0.06 1.05 6.86 37.16 0.25 1.30 16 17 O -0.56 -10.08 12.64 -35.23 -0.45 -10.52 16 18 N -0.72 -17.10 4.51 -53.43 -0.24 -17.34 16 19 C -0.34 -8.94 9.93 -15.06 -0.15 -9.09 16 20 H 0.06 1.64 7.83 -52.48 -0.41 1.23 16 21 C -0.04 -1.09 5.50 -17.43 -0.10 -1.18 16 22 N -0.94 -28.09 13.70 55.49 0.76 -27.33 16 23 Si 1.08 24.87 29.92 -169.99 -5.09 19.78 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.30 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.30 -6.59 7.11 56.52 0.40 -6.19 16 27 C -0.04 -0.53 9.53 -39.22 -0.37 -0.91 16 28 C -0.21 -2.65 9.01 -39.50 -0.36 -3.01 16 29 H 0.22 0.97 7.80 -54.08 -0.42 0.55 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.57 7.65 -51.93 -0.40 0.17 16 33 H 0.07 0.62 7.65 -51.93 -0.40 0.23 16 34 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.14 1.83 7.64 -52.49 -0.40 1.43 16 36 H 0.41 7.08 6.16 -40.82 -0.25 6.83 16 37 H 0.08 1.55 7.39 -51.93 -0.38 1.16 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.36 4.72 9.12 45.56 0.42 5.14 16 42 H 0.37 9.55 6.63 -40.82 -0.27 9.28 16 43 H 0.26 7.74 6.77 -40.82 -0.28 7.46 16 44 H 0.13 1.86 6.39 -52.49 -0.34 1.53 16 45 H 0.13 1.42 6.28 -52.49 -0.33 1.09 16 LS Contribution 390.09 15.07 5.88 5.88 Total: -1.00 -34.00 390.09 -7.39 -41.39 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: -5.21 Total: 20.70 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -2.61 Total: -5.02 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: 0.19 Total: -57.49 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.55 Total: -25.23 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.09 Total: 19.78 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.00 -7.39 -41.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485995479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.540 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds