Wall clock time and date at job start Tue Mar 31 2020 17:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52991 * 109.46944 * 208.11412 * 3 2 1 5 5 O 1.42904 * 109.46963 * 180.02562 * 4 3 2 6 6 C 1.35716 * 116.99792 * 180.02562 * 5 4 3 7 7 C 1.38997 * 119.90697 * 180.02562 * 6 5 4 8 8 C 1.37703 * 120.08660 * 180.02562 * 7 6 5 9 9 C 1.39742 * 119.91128 * 359.97438 * 8 7 6 10 10 C 1.47598 * 120.08861 * 180.02562 * 9 8 7 11 11 O 1.21583 * 119.99933 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99934 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99861 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46985 * 180.02562 * 13 12 10 15 15 H 1.09005 * 109.47159 * 64.99675 * 14 13 12 16 16 C 1.52999 * 109.47264 * 184.99674 * 14 13 12 17 17 O 1.42903 * 109.46807 * 54.99742 * 16 14 13 18 18 N 1.46498 * 109.47167 * 304.99505 * 14 13 12 19 19 C 1.36935 * 120.00239 * 154.99975 * 18 14 13 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 14 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 14 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72253 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72375 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72186 * 23 21 19 27 27 C 1.39732 * 119.82073 * 0.27431 * 9 8 7 28 28 C 1.37703 * 119.91390 * 359.46918 * 27 9 8 29 29 H 4.44641 * 5.63313 * 180.02562 * 4 1 2 30 30 H 1.09002 * 109.46769 * 88.11450 * 3 2 1 31 31 H 1.09004 * 109.47014 * 328.11567 * 3 2 1 32 32 H 1.09002 * 109.47357 * 60.00398 * 4 3 2 33 33 H 1.08998 * 109.47737 * 300.00147 * 4 3 2 34 34 H 1.07997 * 119.96030 * 0.02562 * 7 6 5 35 35 H 1.08001 * 120.04808 * 179.97438 * 8 7 6 36 36 H 0.96994 * 120.00036 * 359.97438 * 12 10 9 37 37 H 1.08996 * 109.47079 * 59.99484 * 13 12 10 38 38 H 1.09001 * 109.46574 * 299.99257 * 13 12 10 39 39 H 1.08997 * 109.47298 * 174.99526 * 16 14 13 40 40 H 1.08997 * 109.46949 * 294.99894 * 16 14 13 41 41 H 0.96702 * 113.99897 * 179.97438 * 17 16 14 42 42 H 0.97004 * 119.99747 * 335.00715 * 18 14 13 43 43 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 44 44 H 1.08001 * 120.04032 * 179.72789 * 27 9 8 45 45 H 1.08002 * 119.95596 * 180.25457 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1554 1.2731 0.6797 5 8 4.5845 1.2741 0.6792 6 6 5.2001 2.3407 1.2494 7 6 6.5882 2.4040 1.2817 8 6 7.2167 3.4843 1.8599 9 6 6.4570 4.5180 2.4141 10 6 7.1265 5.6780 3.0342 11 8 8.3407 5.7349 3.0638 12 7 6.3921 6.6741 3.5677 13 6 7.0567 7.8258 4.1828 14 6 6.0025 8.8028 4.7071 15 1 5.4386 8.3314 5.5121 16 6 6.6924 10.0615 5.2369 17 8 7.5239 10.6148 4.2149 18 7 5.0904 9.1668 3.6201 19 6 3.8180 9.5852 3.9050 20 1 3.4871 9.6474 4.9312 21 6 2.9535 9.9296 2.8750 22 7 3.3586 9.8591 1.6247 23 14 1.2181 10.5011 3.2637 24 1 0.5046 10.8127 1.9992 25 1 0.4939 9.4264 3.9890 26 1 1.2763 11.7185 4.1122 27 6 5.0617 4.4479 2.3842 28 6 4.4408 3.3668 1.7995 29 1 -1.0501 -0.0004 0.0000 30 1 3.0094 -0.0330 -1.0271 31 1 3.0098 -0.8718 0.5428 32 1 2.7921 1.3068 1.7069 33 1 2.7917 2.1456 0.1370 34 1 7.1747 1.6050 0.8528 35 1 8.2954 3.5327 1.8850 36 1 5.4235 6.6289 3.5438 37 1 7.6786 8.3257 3.4402 38 1 7.6802 7.4863 5.0099 39 1 5.9391 10.7934 5.5283 40 1 7.3029 9.8042 6.1024 41 1 7.9933 11.4173 4.4813 42 1 5.3877 9.1112 2.6984 43 1 4.2599 9.5627 1.4227 44 1 4.4711 5.2427 2.8153 45 1 3.3624 3.3139 1.7723 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485995479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:37 Heat of formation + Delta-G solvation = -57.338148 kcal Electronic energy + Delta-G solvation = -27290.898767 eV Core-core repulsion = 23274.696054 eV Total energy + Delta-G solvation = -4016.202713 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.56457 -40.63128 -38.87335 -38.18783 -36.57180 -35.54927 -35.45542 -33.33675 -32.23209 -31.75409 -30.73488 -29.66746 -26.90737 -25.63223 -25.37194 -24.34987 -22.97398 -21.84718 -21.36688 -19.76743 -19.56160 -18.95441 -18.45675 -18.23865 -17.59131 -17.32362 -16.86093 -16.45231 -16.39827 -15.87401 -15.70613 -15.43606 -15.13999 -14.99848 -14.93872 -14.84660 -14.59510 -14.49215 -14.30380 -13.64461 -13.58754 -13.23251 -13.14487 -13.05654 -12.70834 -12.53796 -12.09866 -12.01579 -11.93432 -11.88573 -11.28679 -11.27860 -11.15878 -11.07002 -10.93253 -10.78977 -10.17994 -10.16373 -9.34826 -9.11533 -8.32632 -5.28271 -0.19882 0.24358 1.55843 1.61005 1.69955 1.76640 1.85942 1.86134 2.15689 2.21774 2.73198 2.77063 3.43366 3.50721 3.54969 3.60800 3.70697 3.73284 3.78057 3.91802 3.93634 3.99385 4.12870 4.26583 4.31345 4.34873 4.45774 4.49961 4.53036 4.74481 4.81050 4.81576 4.88225 4.89575 5.03507 5.10219 5.12139 5.17291 5.28498 5.39998 5.55071 5.63737 6.21927 6.48132 6.52640 6.63385 6.96724 7.10283 7.13014 7.99946 8.14990 9.17609 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008883 B = 0.003033 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3151.432238 B = 9228.685796 C =12019.569827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.225 4.225 3 C -0.003 4.003 4 C 0.057 3.943 5 O -0.310 6.310 6 C 0.157 3.843 7 C -0.157 4.157 8 C -0.024 4.024 9 C -0.191 4.191 10 C 0.555 3.445 11 O -0.584 6.584 12 N -0.710 5.710 13 C 0.128 3.872 14 C 0.166 3.834 15 H 0.078 0.922 16 C 0.066 3.934 17 O -0.585 6.585 18 N -0.734 5.734 19 C -0.327 4.327 20 H 0.072 0.928 21 C -0.100 4.100 22 N -0.974 5.974 23 Si 1.125 2.875 24 H -0.300 1.300 25 H -0.274 1.274 26 H -0.283 1.283 27 C -0.044 4.044 28 C -0.216 4.216 29 H 0.245 0.755 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.162 0.838 35 H 0.144 0.856 36 H 0.408 0.592 37 H 0.052 0.948 38 H 0.080 0.920 39 H 0.036 0.964 40 H 0.068 0.932 41 H 0.387 0.613 42 H 0.358 0.642 43 H 0.242 0.758 44 H 0.130 0.870 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.100 -18.547 2.404 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.225 4.225 3 C -0.040 4.040 4 C -0.018 4.018 5 O -0.224 6.224 6 C 0.111 3.889 7 C -0.176 4.176 8 C -0.043 4.043 9 C -0.194 4.194 10 C 0.345 3.655 11 O -0.467 6.467 12 N -0.361 5.361 13 C 0.004 3.996 14 C 0.057 3.943 15 H 0.096 0.904 16 C -0.015 4.015 17 O -0.392 6.392 18 N -0.375 5.375 19 C -0.458 4.458 20 H 0.090 0.910 21 C -0.292 4.292 22 N -0.621 5.621 23 Si 0.951 3.049 24 H -0.226 1.226 25 H -0.200 1.200 26 H -0.209 1.209 27 C -0.063 4.063 28 C -0.234 4.234 29 H 0.261 0.739 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.180 0.820 35 H 0.162 0.838 36 H 0.245 0.755 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.235 0.765 42 H 0.190 0.810 43 H 0.052 0.948 44 H 0.147 0.853 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.926 -18.635 1.614 18.728 hybrid contribution 1.051 0.637 0.654 1.392 sum 0.125 -17.998 2.267 18.140 Atomic orbital electron populations 1.25781 0.96948 0.98314 0.99353 1.23018 0.94746 1.02655 1.02118 1.18411 0.84478 0.97574 1.03503 1.22898 0.77182 0.99559 1.02132 1.85953 1.22240 1.40034 1.74123 1.19302 0.92508 0.86135 0.90971 1.20581 0.91307 1.00675 1.04989 1.21145 1.00777 0.90513 0.91901 1.19831 0.94223 0.97243 1.08128 1.18544 0.86527 0.82896 0.77578 1.90700 1.14819 1.80540 1.60649 1.45920 1.11027 1.20387 1.58727 1.21423 0.94998 0.85459 0.97719 1.20784 0.89681 0.92194 0.91649 0.90447 1.22843 0.92692 0.96122 0.89861 1.86506 1.63701 1.46809 1.42163 1.42482 1.10986 1.80439 1.03633 1.20341 0.90424 1.40386 0.94632 0.90994 1.27037 1.08204 1.01320 0.92590 1.70985 1.19207 1.52426 1.19531 0.82651 0.71236 0.76442 0.74586 1.22613 1.19953 1.20905 1.21232 0.93007 0.97182 0.94833 1.21371 1.01411 0.95493 1.05165 0.73857 0.87628 0.87284 0.90566 0.91175 0.82013 0.83778 0.75511 0.92981 0.90161 0.94602 0.91427 0.76528 0.81014 0.94767 0.85253 0.83144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.55 19.25 74.32 1.43 -1.12 16 2 C -0.23 -3.50 13.34 31.13 0.42 -3.09 16 3 C 0.00 -0.04 6.07 28.79 0.17 0.13 16 4 C 0.06 0.88 4.69 71.98 0.34 1.22 16 5 O -0.31 -5.96 10.12 -90.38 -0.92 -6.88 16 6 C 0.16 3.53 6.70 22.63 0.15 3.68 16 7 C -0.16 -3.47 9.97 22.33 0.22 -3.24 16 8 C -0.02 -0.65 9.58 22.51 0.22 -0.43 16 9 C -0.19 -5.89 5.87 -20.08 -0.12 -6.01 16 10 C 0.56 20.25 7.76 86.71 0.67 20.92 16 11 O -0.58 -24.35 16.34 -3.98 -0.06 -24.41 16 12 N -0.71 -25.36 5.34 -466.21 -2.49 -27.85 16 13 C 0.13 4.64 5.12 86.38 0.44 5.08 16 14 C 0.17 6.23 2.84 44.99 0.13 6.36 16 15 H 0.08 2.74 8.08 -2.38 -0.02 2.72 16 16 C 0.07 2.18 6.86 71.98 0.49 2.68 16 17 O -0.58 -20.48 12.64 -148.98 -1.88 -22.36 16 18 N -0.73 -34.85 4.51 -322.94 -1.45 -36.31 16 19 C -0.33 -17.06 9.93 84.03 0.83 -16.23 16 20 H 0.07 3.59 7.83 -2.91 -0.02 3.57 16 21 C -0.10 -5.53 5.50 84.86 0.47 -5.07 16 22 N -0.97 -59.63 13.70 21.65 0.30 -59.33 16 23 Si 1.13 49.82 29.92 68.60 2.05 51.87 16 24 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 26 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 27 C -0.04 -1.22 9.53 22.50 0.21 -1.01 16 28 C -0.22 -5.12 9.01 22.32 0.20 -4.92 16 29 H 0.25 1.61 7.80 -4.41 -0.03 1.57 16 30 H 0.11 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.08 1.10 7.65 -2.39 -0.02 1.08 16 33 H 0.07 1.12 7.65 -2.39 -0.02 1.10 16 34 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 35 H 0.14 3.70 7.64 -2.91 -0.02 3.68 16 36 H 0.41 14.49 6.16 -92.71 -0.57 13.92 16 37 H 0.05 2.15 7.39 -2.39 -0.02 2.13 16 38 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.39 9.48 9.12 -74.06 -0.68 8.81 16 42 H 0.36 18.94 6.63 -92.71 -0.61 18.32 16 43 H 0.24 15.08 6.77 -92.71 -0.63 14.45 16 44 H 0.13 3.67 6.39 -2.91 -0.02 3.65 16 45 H 0.15 2.98 6.28 -2.91 -0.02 2.96 16 Total: -1.00 -73.52 390.09 1.15 -72.37 By element: Atomic # 1 Polarization: 54.62 SS G_CDS: -0.68 Total: 53.94 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 6.28 Total: -1.04 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -3.65 Total: -123.49 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -2.86 Total: -53.65 kcal Atomic # 14 Polarization: 49.82 SS G_CDS: 2.05 Total: 51.87 kcal Total: -73.52 1.15 -72.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485995479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.029 kcal (2) G-P(sol) polarization free energy of solvation -73.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds