Wall clock time and date at job start Tue Mar 31 2020 17:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47115 * 103.26797 * 3 2 1 5 5 O 1.42903 * 109.47270 * 179.97438 * 4 3 2 6 6 C 1.35708 * 117.00263 * 179.97438 * 5 4 3 7 7 C 1.38996 * 119.91169 * 180.02562 * 6 5 4 8 8 C 1.37709 * 120.08451 * 180.02562 * 7 6 5 9 9 C 1.39730 * 119.91413 * 359.97438 * 8 7 6 10 10 C 1.47605 * 120.08781 * 180.02562 * 9 8 7 11 11 O 1.21580 * 119.99863 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99753 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99874 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47349 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.46953 * 295.00895 * 14 13 12 16 16 C 1.52996 * 109.47332 * 175.00381 * 14 13 12 17 17 O 1.42906 * 109.46885 * 305.00176 * 16 14 13 18 18 N 1.46505 * 109.46807 * 55.00436 * 14 13 12 19 19 C 1.36931 * 119.99788 * 205.00000 * 18 14 13 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 14 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 14 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48496 * 109.47141 * 59.99751 * 23 21 19 25 25 H 1.48490 * 109.47071 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46993 * 300.00028 * 23 21 19 27 27 C 1.39733 * 119.82260 * 0.27517 * 9 8 7 28 28 C 1.37705 * 119.91135 * 359.47219 * 27 9 8 29 29 H 4.44642 * 5.63340 * 180.02562 * 4 1 2 30 30 H 1.09002 * 109.47938 * 343.26563 * 3 2 1 31 31 H 1.09006 * 109.46940 * 223.26437 * 3 2 1 32 32 H 1.09001 * 109.47522 * 59.99578 * 4 3 2 33 33 H 1.08996 * 109.46994 * 299.99115 * 4 3 2 34 34 H 1.07997 * 119.95591 * 359.97438 * 7 6 5 35 35 H 1.08000 * 120.03922 * 179.97438 * 8 7 6 36 36 H 0.97000 * 120.00108 * 0.02562 * 12 10 9 37 37 H 1.09009 * 109.46721 * 60.00549 * 13 12 10 38 38 H 1.09000 * 109.47501 * 300.00847 * 13 12 10 39 39 H 1.08998 * 109.47306 * 65.00267 * 16 14 13 40 40 H 1.08990 * 109.47060 * 185.00303 * 16 14 13 41 41 H 0.96701 * 113.99874 * 179.97438 * 17 16 14 42 42 H 0.97000 * 119.99792 * 24.99795 * 18 14 13 43 43 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 44 44 H 1.08005 * 120.04301 * 179.69829 * 27 9 8 45 45 H 1.07998 * 119.95627 * 180.25342 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.3319 -1.4040 5 8 4.5848 0.3332 -1.4039 6 6 5.2008 0.6105 -2.5809 7 6 6.5890 0.6273 -2.6496 8 6 7.2178 0.9089 -3.8420 9 6 6.4584 1.1773 -4.9838 10 6 7.1284 1.4789 -6.2640 11 8 8.3425 1.4936 -6.3260 12 7 6.3942 1.7370 -7.3643 13 6 7.0592 2.0370 -8.6348 14 6 6.0053 2.2905 -9.7147 15 1 5.4409 1.3754 -9.8935 16 6 6.6957 2.7252 -11.0090 17 8 7.5279 3.8572 -10.7480 18 7 5.0937 3.3472 -9.2688 19 6 3.8216 3.4110 -9.7713 20 1 3.4900 2.6822 -10.4961 21 6 2.9560 4.4088 -9.3445 22 7 3.3599 5.2967 -8.4609 23 14 1.2180 4.4913 -10.0243 24 1 0.5003 3.2318 -9.7023 25 1 0.5017 5.6398 -9.4137 26 1 1.2707 4.6681 -11.4978 27 6 5.0632 1.1645 -4.9093 28 6 4.4419 0.8770 -3.7145 29 1 -1.0500 0.0002 0.0001 30 1 3.0099 -0.9833 0.2959 31 1 3.0089 0.7492 0.7044 32 1 2.7920 1.3159 -1.7000 33 1 2.7929 -0.4166 -2.1083 34 1 7.1752 0.4202 -1.7665 35 1 8.2964 0.9221 -3.8944 36 1 5.4255 1.7249 -7.3149 37 1 7.6830 1.1920 -8.9267 38 1 7.6810 2.9247 -8.5188 39 1 7.3057 1.9055 -11.3884 40 1 5.9427 2.9912 -11.7507 41 1 7.9982 4.1873 -11.5258 42 1 5.3914 4.0016 -8.6175 43 1 2.7551 5.9942 -8.1629 44 1 4.4727 1.3763 -5.7886 45 1 3.3635 0.8629 -3.6570 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485995481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:48 Heat of formation + Delta-G solvation = -32.939458 kcal Electronic energy + Delta-G solvation = -27243.349658 eV Core-core repulsion = 23228.204952 eV Total energy + Delta-G solvation = -4015.144707 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -40.47012 -39.33328 -37.46279 -36.88262 -34.89410 -34.87738 -33.52260 -31.72408 -31.07729 -30.81504 -29.73138 -28.21169 -25.53248 -24.61973 -23.68537 -23.14850 -21.95308 -20.16170 -19.95316 -18.90705 -18.10721 -17.68942 -17.11266 -16.61372 -16.56304 -16.34024 -15.44904 -15.04793 -14.84042 -14.55234 -14.34495 -14.13749 -14.06956 -13.84101 -13.61239 -13.45328 -13.34374 -13.01720 -12.85223 -12.55726 -12.36911 -12.22323 -11.94992 -11.42592 -11.13510 -10.95987 -10.89518 -10.85929 -10.66989 -10.57272 -10.48565 -10.14974 -9.80988 -9.61019 -9.35690 -9.11762 -8.99814 -8.62927 -8.25084 -7.05997 -5.83267 -3.13929 0.95946 1.30204 2.23170 2.45081 2.97576 3.07586 3.36629 3.42067 3.43501 3.61803 3.97926 4.10134 4.50359 4.52377 4.57077 4.71368 4.81956 4.92531 4.92766 5.04375 5.18849 5.30631 5.38856 5.40374 5.44128 5.51423 5.55391 5.57388 5.64111 5.89422 5.92303 6.01999 6.05110 6.08498 6.23031 6.34360 6.43676 6.51007 6.58247 6.75095 6.93887 7.16080 7.20898 7.59712 7.98598 8.20849 8.33446 8.61983 9.45633 10.01129 10.37933 11.37968 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008841 B = 0.003035 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3166.413729 B = 9224.017648 C =12026.109332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.194 4.194 3 C -0.008 4.008 4 C 0.061 3.939 5 O -0.313 6.313 6 C 0.150 3.850 7 C -0.163 4.163 8 C -0.022 4.022 9 C -0.167 4.167 10 C 0.557 3.443 11 O -0.554 6.554 12 N -0.708 5.708 13 C 0.119 3.881 14 C 0.165 3.835 15 H 0.065 0.935 16 C 0.060 3.940 17 O -0.560 6.560 18 N -0.713 5.713 19 C -0.250 4.250 20 H 0.069 0.931 21 C -0.007 4.007 22 N -0.925 5.925 23 Si 0.905 3.095 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.037 4.037 28 C -0.215 4.215 29 H 0.220 0.780 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.408 0.592 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.027 0.973 40 H 0.048 0.952 41 H 0.364 0.636 42 H 0.389 0.611 43 H 0.256 0.744 44 H 0.136 0.864 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.849 -12.040 12.187 17.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.194 4.194 3 C -0.044 4.044 4 C -0.014 4.014 5 O -0.226 6.226 6 C 0.104 3.896 7 C -0.181 4.181 8 C -0.041 4.041 9 C -0.170 4.170 10 C 0.345 3.655 11 O -0.435 6.435 12 N -0.360 5.360 13 C -0.006 4.006 14 C 0.054 3.946 15 H 0.083 0.917 16 C -0.022 4.022 17 O -0.363 6.363 18 N -0.355 5.355 19 C -0.381 4.381 20 H 0.087 0.913 21 C -0.204 4.204 22 N -0.572 5.572 23 Si 0.736 3.264 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.056 4.056 28 C -0.234 4.234 29 H 0.237 0.763 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.154 0.846 35 H 0.160 0.840 36 H 0.245 0.755 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.045 0.955 40 H 0.067 0.933 41 H 0.208 0.792 42 H 0.224 0.776 43 H 0.066 0.934 44 H 0.154 0.846 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.360 -12.163 12.848 17.744 hybrid contribution -1.716 0.555 -1.068 2.096 sum -0.356 -11.608 11.780 16.542 Atomic orbital electron populations 1.24994 0.95991 1.00551 0.99074 1.22589 0.93965 1.01041 1.01808 1.18421 0.84892 1.04525 0.96573 1.22726 0.78487 1.02487 0.97682 1.85937 1.20959 1.85118 1.30618 1.19186 0.92273 0.93804 0.84298 1.20344 0.91037 1.07650 0.99117 1.21059 1.00632 0.92386 0.90056 1.19945 0.93604 1.08630 0.94804 1.18105 0.86814 0.77002 0.83624 1.90728 1.13590 1.53396 1.85741 1.45912 1.11096 1.69807 1.09163 1.21561 0.95458 1.00815 0.82719 1.20604 0.90122 0.93202 0.90711 0.91676 1.23021 0.92408 0.86883 0.99848 1.86575 1.63286 1.48954 1.37509 1.42375 1.10231 1.31912 1.50981 1.19168 0.88457 1.10516 1.19920 0.91262 1.24740 0.98338 0.97836 0.99443 1.69671 1.35648 1.17795 1.34054 0.86316 0.84683 0.76986 0.78405 1.21277 1.21713 1.21320 1.21267 0.93538 0.93036 0.97768 1.21191 1.00375 1.08812 0.92982 0.76287 0.88374 0.88312 0.91062 0.91203 0.84644 0.83994 0.75494 0.92023 0.90482 0.95511 0.93331 0.79159 0.77638 0.93368 0.84605 0.84906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.45 19.25 29.55 0.57 -0.88 16 2 C -0.19 -1.65 13.34 -37.13 -0.50 -2.15 16 3 C -0.01 -0.06 6.07 -29.52 -0.18 -0.23 16 4 C 0.06 0.53 4.69 37.16 0.17 0.70 16 5 O -0.31 -3.35 10.12 -18.83 -0.19 -3.54 16 6 C 0.15 1.82 6.70 -39.02 -0.26 1.56 16 7 C -0.16 -1.94 9.97 -39.49 -0.39 -2.34 16 8 C -0.02 -0.30 9.58 -39.22 -0.38 -0.68 16 9 C -0.17 -2.56 5.87 -104.96 -0.62 -3.17 16 10 C 0.56 10.00 7.76 -12.44 -0.10 9.90 16 11 O -0.55 -11.36 16.34 5.30 0.09 -11.28 16 12 N -0.71 -12.49 5.34 -61.32 -0.33 -12.81 16 13 C 0.12 2.15 5.12 -4.04 -0.02 2.13 16 14 C 0.16 3.12 2.84 -67.93 -0.19 2.92 16 15 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 16 C 0.06 1.03 6.86 37.16 0.25 1.29 16 17 O -0.56 -10.03 12.64 -35.23 -0.45 -10.47 16 18 N -0.71 -16.81 4.51 -53.42 -0.24 -17.05 16 19 C -0.25 -6.46 9.93 -15.06 -0.15 -6.61 16 20 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 22 N -0.92 -26.90 13.06 55.49 0.72 -26.18 16 23 Si 0.91 21.39 29.55 -169.99 -5.02 16.37 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 27 C -0.04 -0.52 9.53 -39.22 -0.37 -0.90 16 28 C -0.21 -2.67 9.01 -39.50 -0.36 -3.03 16 29 H 0.22 0.97 7.80 -54.09 -0.42 0.55 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.62 7.65 -51.93 -0.40 0.23 16 33 H 0.07 0.57 7.65 -51.93 -0.40 0.17 16 34 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 35 H 0.14 1.85 7.64 -52.49 -0.40 1.44 16 36 H 0.41 7.09 6.16 -40.82 -0.25 6.84 16 37 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 38 H 0.08 1.57 7.39 -51.93 -0.38 1.19 16 39 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.36 4.69 9.12 45.56 0.42 5.10 16 42 H 0.39 10.25 7.80 -40.82 -0.32 9.93 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.14 1.88 6.40 -52.48 -0.34 1.55 16 45 H 0.13 1.41 6.28 -52.49 -0.33 1.08 16 LS Contribution 391.79 15.07 5.90 5.90 Total: -1.00 -33.10 391.79 -7.45 -40.54 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: -5.32 Total: 20.28 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -2.61 Total: -1.77 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.16 Total: -56.04 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.55 Total: -25.29 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.10 -7.45 -40.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485995481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.603 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds