Wall clock time and date at job start Tue Mar 31 2020 17:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47115 * 103.26797 * 3 2 1 5 5 O 1.42903 * 109.47270 * 179.97438 * 4 3 2 6 6 C 1.35708 * 117.00263 * 179.97438 * 5 4 3 7 7 C 1.38996 * 119.91169 * 180.02562 * 6 5 4 8 8 C 1.37709 * 120.08451 * 180.02562 * 7 6 5 9 9 C 1.39730 * 119.91413 * 359.97438 * 8 7 6 10 10 C 1.47605 * 120.08781 * 180.02562 * 9 8 7 11 11 O 1.21580 * 119.99863 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99753 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99874 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47349 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.46953 * 295.00895 * 14 13 12 16 16 C 1.52996 * 109.47332 * 175.00381 * 14 13 12 17 17 O 1.42906 * 109.46885 * 305.00176 * 16 14 13 18 18 N 1.46505 * 109.46807 * 55.00436 * 14 13 12 19 19 C 1.36931 * 119.99788 * 205.00000 * 18 14 13 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 14 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 14 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48496 * 109.47141 * 59.99751 * 23 21 19 25 25 H 1.48490 * 109.47071 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46993 * 300.00028 * 23 21 19 27 27 C 1.39733 * 119.82260 * 0.27517 * 9 8 7 28 28 C 1.37705 * 119.91135 * 359.47219 * 27 9 8 29 29 H 4.44642 * 5.63340 * 180.02562 * 4 1 2 30 30 H 1.09002 * 109.47938 * 343.26563 * 3 2 1 31 31 H 1.09006 * 109.46940 * 223.26437 * 3 2 1 32 32 H 1.09001 * 109.47522 * 59.99578 * 4 3 2 33 33 H 1.08996 * 109.46994 * 299.99115 * 4 3 2 34 34 H 1.07997 * 119.95591 * 359.97438 * 7 6 5 35 35 H 1.08000 * 120.03922 * 179.97438 * 8 7 6 36 36 H 0.97000 * 120.00108 * 0.02562 * 12 10 9 37 37 H 1.09009 * 109.46721 * 60.00549 * 13 12 10 38 38 H 1.09000 * 109.47501 * 300.00847 * 13 12 10 39 39 H 1.08998 * 109.47306 * 65.00267 * 16 14 13 40 40 H 1.08990 * 109.47060 * 185.00303 * 16 14 13 41 41 H 0.96701 * 113.99874 * 179.97438 * 17 16 14 42 42 H 0.97000 * 119.99792 * 24.99795 * 18 14 13 43 43 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 44 44 H 1.08005 * 120.04301 * 179.69829 * 27 9 8 45 45 H 1.07998 * 119.95627 * 180.25342 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.3319 -1.4040 5 8 4.5848 0.3332 -1.4039 6 6 5.2008 0.6105 -2.5809 7 6 6.5890 0.6273 -2.6496 8 6 7.2178 0.9089 -3.8420 9 6 6.4584 1.1773 -4.9838 10 6 7.1284 1.4789 -6.2640 11 8 8.3425 1.4936 -6.3260 12 7 6.3942 1.7370 -7.3643 13 6 7.0592 2.0370 -8.6348 14 6 6.0053 2.2905 -9.7147 15 1 5.4409 1.3754 -9.8935 16 6 6.6957 2.7252 -11.0090 17 8 7.5279 3.8572 -10.7480 18 7 5.0937 3.3472 -9.2688 19 6 3.8216 3.4110 -9.7713 20 1 3.4900 2.6822 -10.4961 21 6 2.9560 4.4088 -9.3445 22 7 3.3599 5.2967 -8.4609 23 14 1.2180 4.4913 -10.0243 24 1 0.5003 3.2318 -9.7023 25 1 0.5017 5.6398 -9.4137 26 1 1.2707 4.6681 -11.4978 27 6 5.0632 1.1645 -4.9093 28 6 4.4419 0.8770 -3.7145 29 1 -1.0500 0.0002 0.0001 30 1 3.0099 -0.9833 0.2959 31 1 3.0089 0.7492 0.7044 32 1 2.7920 1.3159 -1.7000 33 1 2.7929 -0.4166 -2.1083 34 1 7.1752 0.4202 -1.7665 35 1 8.2964 0.9221 -3.8944 36 1 5.4255 1.7249 -7.3149 37 1 7.6830 1.1920 -8.9267 38 1 7.6810 2.9247 -8.5188 39 1 7.3057 1.9055 -11.3884 40 1 5.9427 2.9912 -11.7507 41 1 7.9982 4.1873 -11.5258 42 1 5.3914 4.0016 -8.6175 43 1 2.7551 5.9942 -8.1629 44 1 4.4727 1.3763 -5.7886 45 1 3.3635 0.8629 -3.6570 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485995481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:45 Heat of formation + Delta-G solvation = -56.718866 kcal Electronic energy + Delta-G solvation = -27244.380811 eV Core-core repulsion = 23228.204952 eV Total energy + Delta-G solvation = -4016.175859 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -41.51360 -40.56786 -38.74912 -38.12600 -36.39890 -35.51971 -35.22700 -33.29139 -32.21487 -31.72795 -30.76538 -29.82292 -26.81914 -25.68759 -25.38102 -24.29496 -22.92836 -21.65065 -21.27760 -19.74470 -19.44146 -18.83500 -18.34905 -18.15740 -17.52377 -17.30282 -16.84141 -16.40263 -16.19374 -16.00852 -15.54671 -15.30362 -14.99846 -14.93008 -14.84590 -14.73567 -14.47195 -14.41982 -14.23603 -13.70140 -13.59011 -13.24289 -13.11754 -13.00365 -12.73275 -12.62564 -12.28729 -11.99376 -11.94955 -11.86086 -11.72448 -11.28056 -11.10498 -11.06453 -10.90156 -10.71306 -10.13559 -10.07091 -9.30417 -9.00095 -7.88674 -5.18310 -0.14783 0.28679 1.50460 1.52213 1.57039 1.58234 1.82915 1.86448 2.20940 2.27237 2.58489 2.82212 3.43159 3.56009 3.61894 3.65308 3.77770 3.82229 3.90774 3.95047 3.99653 4.04972 4.17362 4.28952 4.36772 4.45022 4.54113 4.56821 4.61943 4.82093 4.82951 4.86634 4.92863 5.00407 5.07606 5.11123 5.20982 5.23272 5.34060 5.48271 5.55691 5.59849 6.25185 6.29214 6.57410 6.63650 7.07401 7.21086 7.37642 8.09569 8.35669 9.33667 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008841 B = 0.003035 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3166.413729 B = 9224.017648 C =12026.109332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.224 4.224 3 C -0.004 4.004 4 C 0.057 3.943 5 O -0.311 6.311 6 C 0.156 3.844 7 C -0.158 4.158 8 C -0.025 4.025 9 C -0.190 4.190 10 C 0.555 3.445 11 O -0.586 6.586 12 N -0.708 5.708 13 C 0.129 3.871 14 C 0.160 3.840 15 H 0.080 0.920 16 C 0.065 3.935 17 O -0.584 6.584 18 N -0.722 5.722 19 C -0.238 4.238 20 H 0.081 0.919 21 C -0.069 4.069 22 N -0.965 5.965 23 Si 0.968 3.032 24 H -0.274 1.274 25 H -0.303 1.303 26 H -0.283 1.283 27 C -0.043 4.043 28 C -0.216 4.216 29 H 0.245 0.755 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.161 0.839 35 H 0.144 0.856 36 H 0.409 0.591 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.037 0.963 41 H 0.385 0.615 42 H 0.372 0.628 43 H 0.248 0.752 44 H 0.132 0.868 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.010 -13.657 12.529 18.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.225 4.225 3 C -0.040 4.040 4 C -0.017 4.017 5 O -0.224 6.224 6 C 0.109 3.891 7 C -0.176 4.176 8 C -0.044 4.044 9 C -0.193 4.193 10 C 0.344 3.656 11 O -0.469 6.469 12 N -0.358 5.358 13 C 0.004 3.996 14 C 0.051 3.949 15 H 0.098 0.902 16 C -0.016 4.016 17 O -0.391 6.391 18 N -0.362 5.362 19 C -0.370 4.370 20 H 0.099 0.901 21 C -0.261 4.261 22 N -0.615 5.615 23 Si 0.797 3.203 24 H -0.200 1.200 25 H -0.229 1.229 26 H -0.209 1.209 27 C -0.061 4.061 28 C -0.235 4.235 29 H 0.261 0.739 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.179 0.821 35 H 0.162 0.838 36 H 0.246 0.754 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.233 0.767 42 H 0.204 0.796 43 H 0.057 0.943 44 H 0.149 0.851 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.530 -13.830 13.145 19.088 hybrid contribution -1.434 0.986 -1.126 2.073 sum -0.904 -12.844 12.019 17.613 Atomic orbital electron populations 1.25769 0.96944 0.99725 0.98046 1.23020 0.94750 1.01904 1.02777 1.18415 0.84456 1.05379 0.95740 1.22889 0.77238 1.02692 0.98924 1.85947 1.22186 1.84560 1.29729 1.19299 0.92503 0.92654 0.84595 1.20571 0.91302 1.06513 0.99250 1.21142 1.00767 0.92347 0.90149 1.19845 0.94236 1.11057 0.94145 1.18526 0.86517 0.76153 0.84399 1.90695 1.14861 1.55044 1.86310 1.45908 1.11089 1.69625 1.09204 1.21418 0.95056 1.00315 0.82766 1.20860 0.89915 0.92381 0.91716 0.90194 1.22869 0.92727 0.87957 0.98038 1.86528 1.63621 1.49477 1.39474 1.42473 1.10413 1.32524 1.50807 1.19572 0.89127 1.09677 1.18626 0.90083 1.25464 1.01960 0.98220 1.00484 1.69843 1.36618 1.18830 1.36246 0.85306 0.80602 0.76761 0.77581 1.20025 1.22946 1.20939 1.21255 0.93026 0.93462 0.98402 1.21366 1.01363 1.08276 0.92473 0.73887 0.87292 0.87632 0.91190 0.90586 0.82116 0.83828 0.75390 0.90258 0.93070 0.91592 0.94442 0.76675 0.79625 0.94312 0.85051 0.83197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.56 19.25 74.32 1.43 -1.13 16 2 C -0.22 -3.50 13.34 31.12 0.42 -3.08 16 3 C 0.00 -0.05 6.07 28.79 0.17 0.13 16 4 C 0.06 0.89 4.69 71.98 0.34 1.23 16 5 O -0.31 -6.01 10.12 -90.29 -0.91 -6.93 16 6 C 0.16 3.52 6.70 22.63 0.15 3.67 16 7 C -0.16 -3.52 9.97 22.33 0.22 -3.29 16 8 C -0.03 -0.67 9.58 22.51 0.22 -0.46 16 9 C -0.19 -5.87 5.87 -20.08 -0.12 -5.99 16 10 C 0.55 20.31 7.76 86.72 0.67 20.99 16 11 O -0.59 -24.54 16.34 -3.97 -0.06 -24.61 16 12 N -0.71 -25.28 5.34 -466.19 -2.49 -27.77 16 13 C 0.13 4.64 5.12 86.38 0.44 5.08 16 14 C 0.16 5.92 2.84 44.99 0.13 6.05 16 15 H 0.08 2.73 8.08 -2.39 -0.02 2.71 16 16 C 0.06 2.12 6.86 71.98 0.49 2.62 16 17 O -0.58 -20.39 12.64 -148.98 -1.88 -22.28 16 18 N -0.72 -34.11 4.51 -322.93 -1.46 -35.56 16 19 C -0.24 -12.22 9.93 84.04 0.83 -11.39 16 20 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 21 C -0.07 -3.73 5.50 84.86 0.47 -3.27 16 22 N -0.97 -57.34 13.06 21.65 0.28 -57.06 16 23 Si 0.97 44.04 29.55 68.60 2.03 46.06 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 27 C -0.04 -1.19 9.53 22.51 0.21 -0.98 16 28 C -0.22 -5.14 9.01 22.33 0.20 -4.94 16 29 H 0.24 1.62 7.80 -4.42 -0.03 1.58 16 30 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.07 1.12 7.65 -2.39 -0.02 1.10 16 33 H 0.08 1.10 7.65 -2.39 -0.02 1.08 16 34 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.14 3.73 7.64 -2.91 -0.02 3.70 16 36 H 0.41 14.45 6.16 -92.71 -0.57 13.88 16 37 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 38 H 0.05 2.12 7.39 -2.39 -0.02 2.11 16 39 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.39 9.41 9.12 -74.06 -0.68 8.73 16 42 H 0.37 20.06 7.80 -92.71 -0.72 19.34 16 43 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 44 H 0.13 3.72 6.40 -2.91 -0.02 3.70 16 45 H 0.15 2.97 6.28 -2.91 -0.02 2.95 16 Total: -1.00 -71.29 391.79 0.86 -70.43 By element: Atomic # 1 Polarization: 53.41 SS G_CDS: -0.93 Total: 52.48 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 6.28 Total: 5.23 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -3.66 Total: -120.40 kcal Atomic # 8 Polarization: -50.95 SS G_CDS: -2.86 Total: -53.81 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -71.29 0.86 -70.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485995481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.714 kcal (2) G-P(sol) polarization free energy of solvation -71.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds