Wall clock time and date at job start Tue Mar 31 2020 17:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47182 * 2 1 4 4 H 1.09006 * 109.46963 * 304.99836 * 3 2 1 5 5 C 1.53004 * 109.47346 * 184.99903 * 3 2 1 6 6 N 1.46491 * 109.47281 * 185.00103 * 5 3 2 7 7 C 1.34777 * 120.00063 * 180.02562 * 6 5 3 8 8 O 1.21652 * 119.99887 * 359.97438 * 7 6 5 9 9 C 1.46993 * 120.00225 * 179.97438 * 7 6 5 10 10 C 1.35814 * 125.14448 * 180.32019 * 9 7 6 11 11 C 1.46250 * 106.08327 * 180.13910 * 10 9 7 12 12 C 1.39821 * 134.14011 * 179.90080 * 11 10 9 13 13 C 1.36598 * 119.81010 * 179.67580 * 12 11 10 14 14 C 1.38813 * 120.49078 * 0.02562 * 13 12 11 15 15 C 1.38210 * 120.68388 * 359.97438 * 14 13 12 16 16 O 1.35966 * 120.12349 * 180.02562 * 15 14 13 17 17 C 1.42905 * 116.99777 * 359.97438 * 16 15 14 18 18 C 1.39491 * 119.76056 * 0.02562 * 15 14 13 19 19 O 1.34777 * 133.24483 * 179.97438 * 18 15 14 20 20 N 1.46496 * 109.47355 * 64.99643 * 3 2 1 21 21 C 1.36940 * 120.00272 * 274.99905 * 20 3 2 22 22 H 1.07996 * 119.99513 * 0.02562 * 21 20 3 23 23 C 1.38807 * 119.99923 * 179.97438 * 21 20 3 24 24 N 1.31616 * 120.00349 * 0.02562 * 23 21 20 25 25 Si 1.86810 * 119.99742 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46969 * 90.00337 * 25 23 21 27 27 H 1.48497 * 109.47002 * 210.00074 * 25 23 21 28 28 H 1.48498 * 109.47080 * 330.00417 * 25 23 21 29 29 H 1.08996 * 109.47326 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47313 * 300.00494 * 1 2 3 31 31 H 1.09003 * 109.46865 * 60.00253 * 1 2 3 32 32 H 1.09004 * 109.47133 * 239.99833 * 2 1 3 33 33 H 1.09003 * 109.46865 * 119.99747 * 2 1 3 34 34 H 1.08998 * 109.47135 * 64.99571 * 5 3 2 35 35 H 1.08997 * 109.46779 * 305.00066 * 5 3 2 36 36 H 0.97002 * 119.99987 * 359.97438 * 6 5 3 37 37 H 1.07998 * 126.95804 * 359.77305 * 10 9 7 38 38 H 1.07992 * 120.09383 * 359.68235 * 12 11 10 39 39 H 1.07999 * 119.75220 * 180.02562 * 13 12 11 40 40 H 1.08000 * 119.65445 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47044 * 59.99992 * 17 16 15 42 42 H 1.09002 * 109.47021 * 179.97438 * 17 16 15 43 43 H 1.08998 * 109.46756 * 299.99591 * 17 16 15 44 44 H 0.96999 * 120.00089 * 95.00129 * 20 3 2 45 45 H 0.97010 * 120.00168 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5649 1.4443 -0.1257 6 7 4.0630 2.8167 -0.0059 7 6 5.3857 3.0630 -0.0868 8 8 6.1658 2.1455 -0.2588 9 6 5.8855 4.4401 0.0329 10 6 7.1913 4.8069 -0.0388 11 6 7.2144 6.2588 0.1353 12 6 8.2294 7.2201 0.1633 13 6 7.9130 8.5366 0.3438 14 6 6.5905 8.9281 0.5002 15 6 5.5711 7.9951 0.4758 16 8 4.2796 8.3913 0.6297 17 6 4.0474 9.7894 0.8132 18 6 5.8721 6.6454 0.2928 19 8 5.1162 5.5316 0.2257 20 7 1.6524 2.0975 1.2517 21 6 0.4156 2.6736 1.3687 22 1 -0.2742 2.6446 0.5382 23 6 0.0482 3.2938 2.5549 24 7 0.8887 3.3286 3.5671 25 14 -1.6393 4.0790 2.7146 26 1 -2.6054 3.0756 3.2297 27 1 -1.5652 5.2241 3.6572 28 1 -2.0888 4.5614 1.3841 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8499 1.0377 -1.0960 35 1 3.9954 0.8311 0.6659 36 1 3.4410 3.5483 0.1309 37 1 8.0410 4.1571 -0.1876 38 1 9.2605 6.9225 0.0426 39 1 8.6977 9.2783 0.3649 40 1 6.3557 9.9726 0.6425 41 1 4.4204 10.3364 -0.0526 42 1 2.9778 9.9687 0.9227 43 1 4.5668 10.1293 1.7092 44 1 2.2718 2.1232 1.9977 45 1 0.6321 3.7624 4.3960 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495052556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:12 Heat of formation + Delta-G solvation = -54.474048 kcal Electronic energy + Delta-G solvation = -28191.292973 eV Core-core repulsion = 24175.214457 eV Total energy + Delta-G solvation = -4016.078517 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.63167 -40.89028 -40.33913 -38.33622 -37.97255 -35.40716 -34.18381 -33.53423 -31.65080 -31.42074 -30.58233 -29.43556 -28.20661 -26.03021 -24.99029 -23.91157 -23.52642 -22.44051 -21.78289 -21.33864 -19.68939 -19.14408 -18.82635 -18.34510 -17.72040 -17.16846 -16.98564 -16.66035 -16.54070 -16.06839 -16.02035 -15.65959 -15.57661 -15.01124 -14.69418 -14.54266 -14.38166 -14.18889 -14.06266 -13.82503 -13.32800 -13.25538 -13.00402 -12.82508 -12.80640 -12.49221 -12.39419 -12.27196 -12.25266 -12.12435 -11.92987 -11.67189 -11.50558 -11.33319 -10.94888 -10.90863 -10.24791 -9.72691 -8.99854 -8.93685 -7.89413 -5.16765 -0.54543 0.26916 0.72105 1.35037 1.47722 1.47932 1.55757 1.96031 2.06663 2.22115 2.57997 2.61858 3.28786 3.45366 3.64683 3.81596 3.85761 3.90267 3.93061 4.05512 4.25408 4.28220 4.35337 4.35777 4.37790 4.46070 4.55151 4.55716 4.69171 4.71287 4.85506 4.95976 5.06138 5.06401 5.08647 5.19150 5.24088 5.31664 5.39754 5.52411 5.57147 5.59176 5.72632 5.73869 6.28425 6.30608 6.39228 6.86526 7.38254 8.10044 8.34162 9.33760 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010242 B = 0.003700 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.246879 B = 7566.707557 C = 9853.229584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.162 3.838 4 H 0.057 0.943 5 C 0.118 3.882 6 N -0.698 5.698 7 C 0.595 3.405 8 O -0.548 6.548 9 C -0.042 4.042 10 C -0.110 4.110 11 C -0.117 4.117 12 C -0.099 4.099 13 C -0.088 4.088 14 C -0.171 4.171 15 C 0.115 3.885 16 O -0.347 6.347 17 C 0.017 3.983 18 C 0.005 3.995 19 O -0.197 6.197 20 N -0.730 5.730 21 C -0.218 4.218 22 H 0.081 0.919 23 C -0.074 4.074 24 N -0.969 5.969 25 Si 0.960 3.040 26 H -0.290 1.290 27 H -0.303 1.303 28 H -0.269 1.269 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.411 0.589 37 H 0.193 0.807 38 H 0.164 0.836 39 H 0.178 0.822 40 H 0.174 0.826 41 H 0.080 0.920 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.371 0.629 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.321 11.698 -9.741 20.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.054 3.946 4 H 0.075 0.925 5 C -0.005 4.005 6 N -0.346 5.346 7 C 0.381 3.619 8 O -0.429 6.429 9 C -0.092 4.092 10 C -0.130 4.130 11 C -0.119 4.119 12 C -0.117 4.117 13 C -0.106 4.106 14 C -0.190 4.190 15 C 0.070 3.930 16 O -0.261 6.261 17 C -0.077 4.077 18 C -0.042 4.042 19 O -0.099 6.099 20 N -0.370 5.370 21 C -0.350 4.350 22 H 0.098 0.902 23 C -0.266 4.266 24 N -0.620 5.620 25 Si 0.790 3.210 26 H -0.218 1.218 27 H -0.230 1.230 28 H -0.194 1.194 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.247 0.753 37 H 0.210 0.790 38 H 0.182 0.818 39 H 0.195 0.805 40 H 0.191 0.809 41 H 0.098 0.902 42 H 0.126 0.874 43 H 0.092 0.908 44 H 0.203 0.797 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.154 10.978 -9.907 20.470 hybrid contribution -1.348 0.706 1.011 1.827 sum 12.806 11.685 -8.895 19.485 Atomic orbital electron populations 1.21701 0.95995 1.00669 1.01739 1.21970 0.96635 0.96841 1.01353 1.20758 0.90738 0.93695 0.89426 0.92494 1.21797 0.94699 0.81508 1.02517 1.45991 1.06611 1.11715 1.70316 1.16793 0.82899 0.84872 0.77337 1.90811 1.56600 1.43237 1.52289 1.22090 0.91307 0.86543 1.09261 1.23001 0.95930 0.93403 1.00703 1.19999 0.92580 0.93623 1.05650 1.20705 0.98982 0.91522 1.00473 1.21077 0.96065 0.96151 0.97318 1.21488 0.92064 0.99670 1.05751 1.18209 0.85609 0.88132 1.01092 1.86191 1.23076 1.29503 1.87338 1.23427 1.04427 0.77183 1.02651 1.19557 0.90386 0.86245 1.08057 1.84094 1.36888 1.13639 1.75298 1.42593 1.15848 1.66208 1.12382 1.19507 0.92407 1.25543 0.97506 0.90154 1.25404 1.01118 1.03408 0.96657 1.69818 1.36870 1.50989 1.04335 0.85331 0.80781 0.77498 0.77365 1.21768 1.22984 1.19426 0.92650 0.93398 0.93256 0.90219 0.93349 0.88913 0.91959 0.75259 0.79023 0.81827 0.80479 0.80878 0.90189 0.87411 0.90769 0.79671 0.94490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 9.18 71.98 0.66 -4.25 16 2 C -0.13 -4.19 5.61 30.59 0.17 -4.02 16 3 C 0.16 6.01 2.59 44.99 0.12 6.13 16 4 H 0.06 2.11 8.08 -2.38 -0.02 2.09 16 5 C 0.12 4.04 5.23 86.38 0.45 4.49 16 6 N -0.70 -25.82 5.38 -466.80 -2.51 -28.33 16 7 C 0.60 22.04 7.80 86.54 0.67 22.71 16 8 O -0.55 -21.45 16.83 -4.19 -0.07 -21.52 16 9 C -0.04 -1.47 7.07 24.00 0.17 -1.30 16 10 C -0.11 -3.15 10.81 23.79 0.26 -2.90 16 11 C -0.12 -3.15 6.38 -20.24 -0.13 -3.28 16 12 C -0.10 -1.77 10.06 22.27 0.22 -1.54 16 13 C -0.09 -1.25 9.97 22.02 0.22 -1.03 16 14 C -0.17 -3.02 9.03 22.40 0.20 -2.82 16 15 C 0.12 3.19 6.70 22.57 0.15 3.34 16 16 O -0.35 -10.21 10.50 -93.17 -0.98 -11.19 16 17 C 0.02 0.28 9.81 113.37 1.11 1.39 16 18 C 0.01 0.18 7.35 23.14 0.17 0.35 16 19 O -0.20 -7.52 10.28 -13.39 -0.14 -7.66 16 20 N -0.73 -34.73 4.51 -322.94 -1.46 -36.18 16 21 C -0.22 -11.44 7.75 84.03 0.65 -10.79 16 22 H 0.08 4.04 7.32 -2.91 -0.02 4.02 16 23 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 24 N -0.97 -59.25 13.06 21.65 0.28 -58.96 16 25 Si 0.96 46.06 29.55 68.60 2.03 48.08 16 26 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 27 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 28 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.05 2.00 5.99 -2.39 -0.01 1.99 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.41 16.52 7.85 -92.71 -0.73 15.79 16 37 H 0.19 4.45 8.06 -2.91 -0.02 4.43 16 38 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 39 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 40 H 0.17 1.77 6.26 -2.91 -0.02 1.76 16 41 H 0.08 0.91 7.66 -2.39 -0.02 0.89 16 42 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 44 H 0.37 19.73 7.80 -92.71 -0.72 19.01 16 45 H 0.25 14.86 8.31 -92.70 -0.77 14.08 16 Total: -1.00 -72.84 380.37 2.31 -70.54 By element: Atomic # 1 Polarization: 42.85 SS G_CDS: -0.42 Total: 42.43 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 5.57 Total: 2.79 kcal Atomic # 7 Polarization: -119.79 SS G_CDS: -3.69 Total: -123.48 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -1.19 Total: -40.37 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -72.84 2.31 -70.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495052556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.062 kcal (2) G-P(sol) polarization free energy of solvation -72.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds