Wall clock time and date at job start Tue Mar 31 2020 17:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08995 * 109.47098 * 54.99720 * 3 2 1 5 5 C 1.53004 * 109.47083 * 174.99797 * 3 2 1 6 6 N 1.46502 * 109.46925 * 175.00128 * 5 3 2 7 7 C 1.34775 * 119.99947 * 180.02562 * 6 5 3 8 8 O 1.21652 * 120.00106 * 359.97438 * 7 6 5 9 9 C 1.46988 * 120.00049 * 179.97438 * 7 6 5 10 10 C 1.35815 * 125.14384 * 179.71809 * 9 7 6 11 11 C 1.46254 * 106.08498 * 179.85939 * 10 9 7 12 12 C 1.39815 * 134.14515 * 180.13998 * 11 10 9 13 13 C 1.36597 * 119.81413 * 180.27893 * 12 11 10 14 14 C 1.38824 * 120.49039 * 0.02562 * 13 12 11 15 15 C 1.38213 * 120.67974 * 359.97438 * 14 13 12 16 16 O 1.35958 * 120.12128 * 180.02562 * 15 14 13 17 17 C 1.42898 * 116.99972 * 359.95871 * 16 15 14 18 18 C 1.39491 * 119.75842 * 359.97438 * 15 14 13 19 19 O 1.34775 * 133.23667 * 180.02562 * 18 15 14 20 20 N 1.46498 * 109.47257 * 294.99786 * 3 2 1 21 21 C 1.36943 * 119.99752 * 84.72207 * 20 3 2 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 3 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 3 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47294 * 90.00155 * 25 23 21 27 27 H 1.48499 * 109.47218 * 210.00015 * 25 23 21 28 28 H 1.48496 * 109.47166 * 329.99846 * 25 23 21 29 29 H 1.09005 * 109.47462 * 300.00060 * 1 2 3 30 30 H 1.08997 * 109.47521 * 60.00105 * 1 2 3 31 31 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47253 * 239.99716 * 2 1 3 33 33 H 1.09001 * 109.47082 * 119.99695 * 2 1 3 34 34 H 1.08997 * 109.47038 * 294.99798 * 5 3 2 35 35 H 1.08999 * 109.47047 * 55.00424 * 5 3 2 36 36 H 0.96997 * 120.00059 * 359.97438 * 6 5 3 37 37 H 1.07994 * 126.95490 * 359.97438 * 10 9 7 38 38 H 1.08003 * 120.09567 * 0.25558 * 12 11 10 39 39 H 1.07997 * 119.76048 * 179.97438 * 13 12 11 40 40 H 1.08001 * 119.65281 * 179.97438 * 14 13 12 41 41 H 1.09007 * 109.47050 * 299.99552 * 17 16 15 42 42 H 1.09001 * 109.47330 * 59.99945 * 17 16 15 43 43 H 1.08999 * 109.47264 * 179.97438 * 17 16 15 44 44 H 0.97001 * 120.00384 * 265.00562 * 20 3 2 45 45 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0629 0.0859 8 8 6.1658 2.1454 0.2579 9 6 5.8857 4.4398 -0.0348 10 6 7.1915 4.8064 0.0351 11 6 7.2148 6.2583 -0.1395 12 6 8.2299 7.2193 -0.1699 13 6 7.9136 8.5357 -0.3511 14 6 6.5907 8.9276 -0.5050 15 6 5.5712 7.9948 -0.4782 16 8 4.2796 8.3911 -0.6306 17 6 4.0473 9.7891 -0.8136 18 6 5.8723 6.6451 -0.2954 19 8 5.1162 5.5315 -0.2266 20 7 1.6525 2.0975 -1.2518 21 6 0.4135 2.6685 -1.3707 22 1 -0.2763 2.6399 -0.5402 23 6 0.0441 3.2841 -2.5588 24 7 0.8846 3.3185 -3.5712 25 14 -1.6456 4.0637 -2.7208 26 1 -1.5781 5.4847 -2.2947 27 1 -2.0903 3.9919 -4.1358 28 1 -2.6118 3.3344 -1.8607 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.8498 1.0377 1.0961 35 1 3.9954 0.8311 -0.6659 36 1 3.4410 3.5482 -0.1315 37 1 8.0409 4.1569 0.1868 38 1 9.2612 6.9217 -0.0501 39 1 8.6983 9.2773 -0.3740 40 1 6.3559 9.9721 -0.6470 41 1 4.4213 10.3360 0.0520 42 1 4.5658 10.1293 -1.7101 43 1 2.9778 9.9685 -0.9228 44 1 2.2719 2.1231 -1.9978 45 1 0.6267 3.7490 -4.4012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495052568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:18 Heat of formation + Delta-G solvation = -33.072974 kcal Electronic energy + Delta-G solvation = -28189.101208 eV Core-core repulsion = 24173.950712 eV Total energy + Delta-G solvation = -4015.150496 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.54908 -39.77373 -39.14394 -37.07003 -36.74336 -33.84930 -32.45978 -32.36952 -30.59702 -29.82079 -29.47424 -28.03916 -27.35980 -24.54065 -23.33977 -22.91262 -22.22442 -21.41521 -20.39928 -19.91835 -18.44894 -17.84445 -17.49931 -17.05299 -16.58708 -15.76860 -15.73058 -15.65785 -15.24562 -15.17908 -14.52653 -14.30706 -13.97202 -13.62661 -13.45100 -13.21261 -13.07930 -12.94460 -12.69354 -12.48693 -12.46813 -12.16738 -11.66233 -11.50371 -11.46842 -11.44708 -10.97012 -10.86012 -10.77602 -10.46539 -10.19185 -10.13782 -9.98099 -9.91939 -9.52554 -8.95204 -8.89122 -8.64327 -8.00336 -7.02467 -5.79288 -3.08844 0.51365 1.17904 1.79779 2.43584 3.02633 3.27128 3.36664 3.41805 3.47128 3.48508 3.50504 4.42100 4.56137 4.57565 4.60427 4.81587 4.96859 4.98858 5.07914 5.15942 5.21739 5.34167 5.36830 5.44460 5.47602 5.55334 5.88382 5.90207 5.91582 5.94551 5.95820 6.10893 6.12662 6.24222 6.37307 6.41493 6.47900 6.56316 6.58893 6.68925 6.80783 7.01132 7.21833 7.25599 7.68273 7.76238 8.27968 8.37721 9.49629 10.03692 10.39309 11.42605 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010248 B = 0.003694 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.464679 B = 7577.569842 C = 9860.675297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.055 0.945 5 C 0.112 3.888 6 N -0.693 5.693 7 C 0.593 3.407 8 O -0.528 6.528 9 C -0.002 4.002 10 C -0.132 4.132 11 C -0.102 4.102 12 C -0.103 4.103 13 C -0.098 4.098 14 C -0.191 4.191 15 C 0.147 3.853 16 O -0.306 6.306 17 C 0.027 3.973 18 C 0.044 3.956 19 O -0.165 6.165 20 N -0.722 5.722 21 C -0.239 4.239 22 H 0.073 0.927 23 C -0.009 4.009 24 N -0.928 5.928 25 Si 0.903 3.097 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.040 0.960 30 H 0.085 0.915 31 H 0.032 0.968 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.418 0.582 37 H 0.172 0.828 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.140 0.860 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.104 0.896 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.585 10.192 8.183 18.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.073 0.927 5 C -0.012 4.012 6 N -0.343 5.343 7 C 0.377 3.623 8 O -0.408 6.408 9 C -0.053 4.053 10 C -0.153 4.153 11 C -0.104 4.104 12 C -0.122 4.122 13 C -0.116 4.116 14 C -0.210 4.210 15 C 0.102 3.898 16 O -0.219 6.219 17 C -0.068 4.068 18 C -0.005 4.005 19 O -0.066 6.066 20 N -0.364 5.364 21 C -0.370 4.370 22 H 0.091 0.909 23 C -0.206 4.206 24 N -0.576 5.576 25 Si 0.734 3.266 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.207 1.207 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.256 0.744 37 H 0.189 0.811 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.158 0.842 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.122 0.878 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.416 9.479 8.287 17.683 hybrid contribution -0.919 1.072 -0.615 1.540 sum 11.497 10.551 7.672 17.389 Atomic orbital electron populations 1.21771 0.95664 0.99642 1.03321 1.22065 0.97041 0.98230 1.00070 1.20576 0.89596 0.93008 0.91622 0.92699 1.21825 0.96067 0.81732 1.01585 1.45967 1.06499 1.11775 1.70090 1.16667 0.83248 0.84315 0.78078 1.90848 1.56386 1.42423 1.51116 1.22236 0.90378 0.86974 1.05759 1.22642 0.96422 0.92528 1.03665 1.19721 0.92453 0.93558 1.04627 1.20216 0.98285 0.91587 1.02067 1.20506 0.95555 0.95783 0.99792 1.20966 0.92380 0.98782 1.08849 1.17789 0.84743 0.88141 0.99175 1.86251 1.22270 1.26616 1.86808 1.23128 1.03612 0.79212 1.00863 1.18861 0.89288 0.85814 1.06517 1.84174 1.35611 1.12756 1.74014 1.42462 1.16734 1.65982 1.11232 1.19188 0.91737 1.28180 0.97879 0.90873 1.24729 0.98027 1.01460 0.96357 1.69663 1.35166 1.48865 1.03883 0.86264 0.84153 0.79371 0.76843 1.21739 1.21884 1.20736 0.94112 0.89605 0.94861 0.92453 0.93787 0.91243 0.91222 0.74390 0.81059 0.85056 0.84993 0.84230 0.92512 0.92406 0.87797 0.78069 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.17 37.15 0.34 -2.28 16 2 C -0.13 -2.28 5.61 -26.74 -0.15 -2.43 16 3 C 0.16 3.02 2.59 -67.93 -0.18 2.84 16 4 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 5 C 0.11 1.90 5.23 -4.04 -0.02 1.88 16 6 N -0.69 -12.31 5.38 -61.52 -0.33 -12.64 16 7 C 0.59 10.53 7.80 -12.72 -0.10 10.43 16 8 O -0.53 -10.15 16.83 5.23 0.09 -10.06 16 9 C 0.00 -0.04 7.07 -36.91 -0.26 -0.30 16 10 C -0.13 -1.89 10.81 -37.23 -0.40 -2.29 16 11 C -0.10 -1.41 6.38 -105.21 -0.67 -2.08 16 12 C -0.10 -1.09 10.06 -39.58 -0.40 -1.49 16 13 C -0.10 -0.91 9.97 -39.96 -0.40 -1.31 16 14 C -0.19 -1.97 9.03 -39.37 -0.36 -2.32 16 15 C 0.15 2.05 6.70 -39.12 -0.26 1.79 16 16 O -0.31 -4.40 10.50 -19.61 -0.21 -4.61 16 17 C 0.03 0.24 9.81 101.05 0.99 1.23 16 18 C 0.04 0.70 7.35 -38.23 -0.28 0.42 16 19 O -0.17 -2.93 10.28 2.65 0.03 -2.91 16 20 N -0.72 -16.74 4.51 -53.43 -0.24 -16.98 16 21 C -0.24 -6.16 7.74 -15.06 -0.12 -6.28 16 22 H 0.07 1.84 7.31 -52.49 -0.38 1.46 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 24 N -0.93 -27.25 13.06 55.49 0.72 -26.53 16 25 Si 0.90 21.84 29.55 -169.99 -5.02 16.82 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 1.82 5.97 -51.93 -0.31 1.51 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.42 7.90 7.85 -40.82 -0.32 7.58 16 37 H 0.17 2.07 8.06 -52.49 -0.42 1.65 16 38 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.14 1.02 6.26 -52.49 -0.33 0.69 16 41 H 0.06 0.39 7.66 -51.92 -0.40 -0.01 16 42 H 0.06 0.42 7.66 -51.93 -0.40 0.03 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.39 9.81 7.80 -40.82 -0.32 9.49 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 380.33 15.07 5.73 5.73 Total: -1.00 -31.54 380.33 -7.83 -39.37 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -6.24 Total: 14.34 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -2.36 Total: -2.53 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.15 Total: -56.15 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.09 Total: -17.58 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.54 -7.83 -39.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495052568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.296 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds