Wall clock time and date at job start Tue Mar 31 2020 17:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08995 * 109.47098 * 54.99720 * 3 2 1 5 5 C 1.53004 * 109.47083 * 174.99797 * 3 2 1 6 6 N 1.46502 * 109.46925 * 175.00128 * 5 3 2 7 7 C 1.34775 * 119.99947 * 180.02562 * 6 5 3 8 8 O 1.21652 * 120.00106 * 359.97438 * 7 6 5 9 9 C 1.46988 * 120.00049 * 179.97438 * 7 6 5 10 10 C 1.35815 * 125.14384 * 179.71809 * 9 7 6 11 11 C 1.46254 * 106.08498 * 179.85939 * 10 9 7 12 12 C 1.39815 * 134.14515 * 180.13998 * 11 10 9 13 13 C 1.36597 * 119.81413 * 180.27893 * 12 11 10 14 14 C 1.38824 * 120.49039 * 0.02562 * 13 12 11 15 15 C 1.38213 * 120.67974 * 359.97438 * 14 13 12 16 16 O 1.35958 * 120.12128 * 180.02562 * 15 14 13 17 17 C 1.42898 * 116.99972 * 359.95871 * 16 15 14 18 18 C 1.39491 * 119.75842 * 359.97438 * 15 14 13 19 19 O 1.34775 * 133.23667 * 180.02562 * 18 15 14 20 20 N 1.46498 * 109.47257 * 294.99786 * 3 2 1 21 21 C 1.36943 * 119.99752 * 84.72207 * 20 3 2 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 3 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 3 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47294 * 90.00155 * 25 23 21 27 27 H 1.48499 * 109.47218 * 210.00015 * 25 23 21 28 28 H 1.48496 * 109.47166 * 329.99846 * 25 23 21 29 29 H 1.09005 * 109.47462 * 300.00060 * 1 2 3 30 30 H 1.08997 * 109.47521 * 60.00105 * 1 2 3 31 31 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47253 * 239.99716 * 2 1 3 33 33 H 1.09001 * 109.47082 * 119.99695 * 2 1 3 34 34 H 1.08997 * 109.47038 * 294.99798 * 5 3 2 35 35 H 1.08999 * 109.47047 * 55.00424 * 5 3 2 36 36 H 0.96997 * 120.00059 * 359.97438 * 6 5 3 37 37 H 1.07994 * 126.95490 * 359.97438 * 10 9 7 38 38 H 1.08003 * 120.09567 * 0.25558 * 12 11 10 39 39 H 1.07997 * 119.76048 * 179.97438 * 13 12 11 40 40 H 1.08001 * 119.65281 * 179.97438 * 14 13 12 41 41 H 1.09007 * 109.47050 * 299.99552 * 17 16 15 42 42 H 1.09001 * 109.47330 * 59.99945 * 17 16 15 43 43 H 1.08999 * 109.47264 * 179.97438 * 17 16 15 44 44 H 0.97001 * 120.00384 * 265.00562 * 20 3 2 45 45 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0629 0.0859 8 8 6.1658 2.1454 0.2579 9 6 5.8857 4.4398 -0.0348 10 6 7.1915 4.8064 0.0351 11 6 7.2148 6.2583 -0.1395 12 6 8.2299 7.2193 -0.1699 13 6 7.9136 8.5357 -0.3511 14 6 6.5907 8.9276 -0.5050 15 6 5.5712 7.9948 -0.4782 16 8 4.2796 8.3911 -0.6306 17 6 4.0473 9.7891 -0.8136 18 6 5.8723 6.6451 -0.2954 19 8 5.1162 5.5315 -0.2266 20 7 1.6525 2.0975 -1.2518 21 6 0.4135 2.6685 -1.3707 22 1 -0.2763 2.6399 -0.5402 23 6 0.0441 3.2841 -2.5588 24 7 0.8846 3.3185 -3.5712 25 14 -1.6456 4.0637 -2.7208 26 1 -1.5781 5.4847 -2.2947 27 1 -2.0903 3.9919 -4.1358 28 1 -2.6118 3.3344 -1.8607 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.8498 1.0377 1.0961 35 1 3.9954 0.8311 -0.6659 36 1 3.4410 3.5482 -0.1315 37 1 8.0409 4.1569 0.1868 38 1 9.2612 6.9217 -0.0501 39 1 8.6983 9.2773 -0.3740 40 1 6.3559 9.9721 -0.6470 41 1 4.4213 10.3360 0.0520 42 1 4.5658 10.1293 -1.7101 43 1 2.9778 9.9685 -0.9228 44 1 2.2719 2.1231 -1.9978 45 1 0.6267 3.7490 -4.4012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495052568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:17 Heat of formation + Delta-G solvation = -54.450373 kcal Electronic energy + Delta-G solvation = -28190.028202 eV Core-core repulsion = 24173.950712 eV Total energy + Delta-G solvation = -4016.077490 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.63188 -40.89126 -40.34086 -38.33731 -37.97359 -35.40797 -34.18170 -33.53476 -31.65051 -31.42028 -30.58330 -29.43718 -28.20862 -26.03114 -24.98922 -23.91203 -23.52603 -22.44125 -21.78353 -21.33940 -19.69024 -19.14446 -18.82684 -18.34613 -17.72122 -17.16820 -16.98714 -16.66183 -16.54232 -16.06784 -16.02055 -15.65932 -15.57650 -15.01117 -14.69543 -14.54325 -14.38255 -14.19010 -14.06319 -13.82476 -13.32862 -13.25659 -13.01742 -12.83710 -12.76520 -12.49280 -12.40990 -12.27305 -12.25437 -12.13177 -11.91578 -11.67821 -11.50258 -11.32978 -10.94949 -10.90951 -10.24847 -9.72736 -8.99828 -8.93775 -7.89416 -5.16737 -0.54601 0.26842 0.72042 1.35015 1.47667 1.48209 1.55840 1.95925 2.06666 2.21997 2.58107 2.61795 3.28708 3.45374 3.64608 3.81539 3.85755 3.90268 3.93007 4.05424 4.25337 4.28111 4.35230 4.35642 4.37557 4.46065 4.55113 4.55696 4.69154 4.71082 4.85534 4.95924 5.06095 5.06380 5.08646 5.19042 5.24026 5.31617 5.39693 5.52399 5.57107 5.59206 5.72758 5.73914 6.28372 6.30669 6.39172 6.86482 7.38255 8.10017 8.34139 9.33795 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010248 B = 0.003694 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.464679 B = 7577.569842 C = 9860.675297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.162 3.838 4 H 0.057 0.943 5 C 0.119 3.881 6 N -0.698 5.698 7 C 0.595 3.405 8 O -0.548 6.548 9 C -0.042 4.042 10 C -0.110 4.110 11 C -0.117 4.117 12 C -0.099 4.099 13 C -0.088 4.088 14 C -0.171 4.171 15 C 0.115 3.885 16 O -0.347 6.347 17 C 0.017 3.983 18 C 0.005 3.995 19 O -0.197 6.197 20 N -0.730 5.730 21 C -0.218 4.218 22 H 0.081 0.919 23 C -0.074 4.074 24 N -0.969 5.969 25 Si 0.960 3.040 26 H -0.293 1.293 27 H -0.302 1.302 28 H -0.268 1.268 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.411 0.589 37 H 0.193 0.807 38 H 0.164 0.836 39 H 0.178 0.822 40 H 0.174 0.826 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.107 0.893 44 H 0.371 0.629 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.310 11.650 9.717 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.054 3.946 4 H 0.075 0.925 5 C -0.005 4.005 6 N -0.346 5.346 7 C 0.381 3.619 8 O -0.429 6.429 9 C -0.092 4.092 10 C -0.130 4.130 11 C -0.118 4.118 12 C -0.117 4.117 13 C -0.106 4.106 14 C -0.190 4.190 15 C 0.069 3.931 16 O -0.261 6.261 17 C -0.077 4.077 18 C -0.042 4.042 19 O -0.099 6.099 20 N -0.370 5.370 21 C -0.349 4.349 22 H 0.099 0.901 23 C -0.266 4.266 24 N -0.620 5.620 25 Si 0.790 3.210 26 H -0.220 1.220 27 H -0.229 1.229 28 H -0.193 1.193 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.247 0.753 37 H 0.210 0.790 38 H 0.182 0.818 39 H 0.195 0.805 40 H 0.191 0.809 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.126 0.874 44 H 0.203 0.797 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.136 10.915 9.880 20.410 hybrid contribution -1.340 0.733 -1.003 1.827 sum 12.796 11.647 8.876 19.447 Atomic orbital electron populations 1.21703 0.96002 1.00657 1.01743 1.21968 0.96619 0.96851 1.01354 1.20758 0.90744 0.93686 0.89433 0.92484 1.21798 0.94687 0.81503 1.02521 1.45993 1.06607 1.11722 1.70314 1.16791 0.82899 0.84870 0.77338 1.90811 1.56600 1.43233 1.52288 1.22091 0.91300 0.86544 1.09274 1.23002 0.95929 0.93402 1.00692 1.19998 0.92572 0.93623 1.05653 1.20705 0.98985 0.91525 1.00463 1.21080 0.96060 0.96150 0.97319 1.21492 0.92058 0.99672 1.05750 1.18209 0.85598 0.88138 1.01106 1.86188 1.23079 1.29500 1.87354 1.23426 1.04414 0.77183 1.02663 1.19557 0.90385 0.86247 1.08059 1.84095 1.36876 1.13646 1.75315 1.42598 1.15716 1.66336 1.12388 1.19509 0.92312 1.25748 0.97379 0.90145 1.25408 1.01155 1.03428 0.96621 1.69820 1.36909 1.51065 1.04233 0.85329 0.81012 0.78392 0.76234 1.22016 1.22890 1.19251 0.93291 0.93381 0.92660 0.93343 0.90225 0.88903 0.91958 0.75263 0.79017 0.81818 0.80475 0.80878 0.90176 0.90759 0.87440 0.79671 0.94494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 9.17 71.98 0.66 -4.27 16 2 C -0.13 -4.19 5.61 30.59 0.17 -4.02 16 3 C 0.16 6.01 2.59 44.99 0.12 6.13 16 4 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 5 C 0.12 4.04 5.23 86.38 0.45 4.49 16 6 N -0.70 -25.82 5.38 -466.79 -2.51 -28.33 16 7 C 0.60 22.03 7.80 86.54 0.67 22.71 16 8 O -0.55 -21.44 16.83 -4.20 -0.07 -21.51 16 9 C -0.04 -1.48 7.07 24.00 0.17 -1.31 16 10 C -0.11 -3.15 10.81 23.79 0.26 -2.89 16 11 C -0.12 -3.15 6.38 -20.24 -0.13 -3.28 16 12 C -0.10 -1.77 10.06 22.27 0.22 -1.54 16 13 C -0.09 -1.25 9.97 22.03 0.22 -1.03 16 14 C -0.17 -3.03 9.03 22.40 0.20 -2.82 16 15 C 0.11 3.19 6.70 22.57 0.15 3.34 16 16 O -0.35 -10.24 10.50 -93.07 -0.98 -11.22 16 17 C 0.02 0.28 9.81 113.37 1.11 1.40 16 18 C 0.01 0.18 7.35 23.14 0.17 0.35 16 19 O -0.20 -7.54 10.28 -13.43 -0.14 -7.67 16 20 N -0.73 -34.73 4.51 -322.94 -1.46 -36.19 16 21 C -0.22 -11.43 7.74 84.03 0.65 -10.78 16 22 H 0.08 4.05 7.31 -2.91 -0.02 4.03 16 23 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 24 N -0.97 -59.26 13.06 21.65 0.28 -58.98 16 25 Si 0.96 46.05 29.55 68.60 2.03 48.07 16 26 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 28 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 29 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.05 2.01 5.97 -2.39 -0.01 2.00 16 31 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.41 16.52 7.85 -92.71 -0.73 15.79 16 37 H 0.19 4.45 8.06 -2.91 -0.02 4.43 16 38 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 39 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 40 H 0.17 1.78 6.26 -2.91 -0.02 1.76 16 41 H 0.08 0.92 7.66 -2.38 -0.02 0.90 16 42 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 43 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.37 19.73 7.80 -92.71 -0.72 19.01 16 45 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -72.87 380.33 2.31 -70.56 By element: Atomic # 1 Polarization: 42.91 SS G_CDS: -0.42 Total: 42.50 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 5.57 Total: 2.77 kcal Atomic # 7 Polarization: -119.81 SS G_CDS: -3.69 Total: -123.49 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -1.19 Total: -40.41 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -72.87 2.31 -70.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495052568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.114 kcal (2) G-P(sol) polarization free energy of solvation -72.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds