Wall clock time and date at job start Tue Mar 31 2020 17:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47301 * 68.30222 * 3 2 1 5 5 C 1.36936 * 120.00029 * 97.97472 * 4 3 2 6 6 H 1.07994 * 120.00227 * 155.77778 * 5 4 3 7 7 C 1.38817 * 120.00080 * 335.78320 * 5 4 3 8 8 N 1.31622 * 119.99759 * 351.11020 * 7 5 4 9 9 Si 1.86796 * 120.00051 * 171.10986 * 7 5 4 10 10 H 1.48499 * 109.47319 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46947 * 120.00167 * 9 7 5 12 12 H 1.48506 * 109.47283 * 240.00099 * 9 7 5 13 13 C 1.46494 * 119.99847 * 277.97656 * 4 3 2 14 14 C 1.50706 * 109.46978 * 90.00050 * 13 4 3 15 15 C 1.34440 * 125.72171 * 89.72014 * 14 13 4 16 16 C 1.41424 * 106.92415 * 179.85358 * 15 14 13 17 17 C 1.35351 * 106.77454 * 0.40198 * 16 15 14 18 18 N 1.39254 * 125.85818 * 179.75385 * 17 16 15 19 19 C 1.46844 * 111.00051 * 304.23009 * 18 17 16 20 20 C 1.53035 * 109.52495 * 174.16142 * 19 18 17 21 21 C 1.53114 * 109.27828 * 59.18285 * 20 19 18 22 22 C 1.53119 * 109.16057 * 302.34457 * 21 20 19 23 23 H 1.09001 * 109.50673 * 297.71962 * 22 21 20 24 24 C 1.50704 * 109.50440 * 177.59446 * 22 21 20 25 25 O 1.20825 * 119.99784 * 240.19657 * 24 22 21 26 26 O 1.34224 * 119.99619 * 60.19988 * 24 22 21 27 27 C 1.46846 * 111.00102 * 180.02562 * 18 17 16 28 28 O 1.34367 * 108.28284 * 359.75129 * 17 16 15 29 29 H 4.40646 * 5.51413 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.47367 * 188.30096 * 3 2 1 31 31 H 1.09004 * 109.47684 * 308.30231 * 3 2 1 32 32 H 0.96995 * 119.99690 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47358 * 209.99851 * 13 4 3 34 34 H 1.09004 * 109.47445 * 329.99881 * 13 4 3 35 35 H 1.07998 * 126.53443 * 359.97438 * 15 14 13 36 36 H 1.07998 * 126.60661 * 180.15235 * 16 15 14 37 37 H 1.09004 * 109.46577 * 294.17973 * 19 18 17 38 38 H 1.09005 * 109.45908 * 54.14739 * 19 18 17 39 39 H 1.09005 * 109.50383 * 299.23928 * 20 19 18 40 40 H 1.09004 * 109.53898 * 179.14496 * 20 19 18 41 41 H 1.09006 * 109.52545 * 182.44236 * 21 20 19 42 42 H 1.08997 * 109.52716 * 62.25075 * 21 20 19 43 43 H 0.96704 * 116.99753 * 179.97438 * 26 24 22 44 44 H 1.09001 * 109.46495 * 305.85907 * 27 18 17 45 45 H 1.09003 * 109.46037 * 65.83177 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5098 -1.2834 5 6 3.5176 0.3632 -2.2664 6 1 4.2176 0.0480 -3.0259 7 6 3.0061 1.6536 -2.2866 8 7 2.0264 1.9860 -1.4728 9 14 3.7080 2.9181 -3.4688 10 1 4.7939 2.2979 -4.2696 11 1 2.6345 3.3968 -4.3763 12 1 4.2541 4.0652 -2.6998 13 6 3.2134 -1.9541 -1.5150 14 6 1.9138 -2.4402 -2.1032 15 6 1.6214 -2.5063 -3.4137 16 6 0.3076 -3.0194 -3.5171 17 6 -0.1303 -3.2292 -2.2537 18 7 -1.3810 -3.7262 -1.8959 19 6 -2.4565 -2.9092 -2.4723 20 6 -3.8085 -3.5645 -2.1815 21 6 -3.9938 -3.6905 -0.6669 22 6 -2.8350 -4.5046 -0.0847 23 1 -2.8490 -5.5100 -0.5056 24 6 -2.9781 -4.5834 1.4135 25 8 -2.1104 -4.1392 2.1274 26 8 -4.0695 -5.1470 1.9546 27 6 -1.5113 -3.8220 -0.4363 28 8 0.8488 -2.8758 -1.4041 29 1 -1.0500 0.0001 -0.0002 30 1 3.0089 1.0177 0.1484 31 1 3.0097 -0.6361 0.8065 32 1 1.6688 2.8874 -1.4872 33 1 4.0278 -2.1672 -2.2075 34 1 3.3977 -2.4643 -0.5695 35 1 2.2675 -2.2234 -4.2317 36 1 -0.2418 -3.2040 -4.4284 37 1 -2.4330 -1.9132 -2.0299 38 1 -2.3151 -2.8311 -3.5503 39 1 -3.8379 -4.5552 -2.6354 40 1 -4.6079 -2.9505 -2.5962 41 1 -4.9363 -4.1960 -0.4559 42 1 -4.0035 -2.6976 -0.2172 43 1 -4.1163 -5.1748 2.9201 44 1 -0.6834 -4.4068 -0.0354 45 1 -1.4924 -2.8218 -0.0036 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588394910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:04 Heat of formation + Delta-G solvation = 14.656473 kcal Electronic energy + Delta-G solvation = -29436.703781 eV Core-core repulsion = 25423.622989 eV Total energy + Delta-G solvation = -4013.080792 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.85003 -40.68824 -38.61986 -36.32037 -36.11333 -33.85621 -32.42599 -31.57374 -31.38486 -31.18311 -28.59476 -26.10675 -25.61325 -25.09434 -23.68757 -21.99961 -21.61524 -20.51805 -20.08154 -19.33303 -18.27777 -17.62646 -17.42617 -16.51530 -16.35008 -15.86165 -15.57522 -15.20519 -14.86850 -14.67439 -14.26175 -13.97643 -13.68974 -13.65075 -13.43223 -13.36939 -12.86730 -12.81293 -12.18377 -12.08089 -11.83525 -11.78490 -11.67699 -11.46595 -11.26770 -11.17897 -11.02204 -10.92994 -10.80050 -10.65994 -10.49229 -10.26341 -10.12219 -9.64889 -9.01229 -8.91907 -8.79224 -8.36938 -7.15690 -6.97664 -5.83480 -3.35238 2.00946 2.39416 2.70944 3.30810 3.32688 3.40584 3.42057 3.48262 4.18549 4.25496 4.32165 4.43537 4.48344 4.54215 4.63790 4.90180 5.08703 5.16260 5.30799 5.33876 5.46119 5.50535 5.57747 5.66172 5.67519 5.74789 5.80047 5.85269 5.86535 5.90143 6.03109 6.14910 6.26610 6.30121 6.37425 6.45930 6.65607 6.75294 6.95189 7.26779 7.28260 7.45056 7.47013 7.68524 7.68753 8.04883 8.25447 9.05338 9.26219 9.66308 10.14344 11.18594 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.003542 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.673059 B = 7902.217519 C = 8286.283869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.083 4.083 3 C 0.266 3.734 4 N -0.569 5.569 5 C -0.266 4.266 6 H 0.077 0.923 7 C 0.009 3.991 8 N -0.889 5.889 9 Si 0.908 3.092 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.288 1.288 13 C 0.214 3.786 14 C 0.001 3.999 15 C -0.204 4.204 16 C -0.216 4.216 17 C 0.139 3.861 18 N -0.434 5.434 19 C 0.048 3.952 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.076 4.076 23 H 0.119 0.881 24 C 0.483 3.517 25 O -0.505 6.505 26 O -0.517 6.517 27 C 0.066 3.934 28 O -0.185 6.185 29 H 0.181 0.819 30 H 0.105 0.895 31 H 0.035 0.965 32 H 0.255 0.745 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.049 0.951 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.410 0.590 44 H 0.092 0.908 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.298 -13.322 1.975 17.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 C -0.086 4.086 3 C 0.142 3.858 4 N -0.288 5.288 5 C -0.395 4.395 6 H 0.095 0.905 7 C -0.191 4.191 8 N -0.532 5.532 9 Si 0.738 3.262 10 H -0.201 1.201 11 H -0.217 1.217 12 H -0.215 1.215 13 C 0.086 3.914 14 C -0.053 4.053 15 C -0.225 4.225 16 C -0.238 4.238 17 C -0.006 4.006 18 N -0.157 5.157 19 C -0.077 4.077 20 C -0.151 4.151 21 C -0.152 4.152 22 C -0.095 4.095 23 H 0.137 0.863 24 C 0.324 3.676 25 O -0.391 6.391 26 O -0.329 6.329 27 C -0.061 4.061 28 O -0.080 6.080 29 H 0.199 0.801 30 H 0.123 0.877 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.156 0.844 36 H 0.153 0.847 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.110 0.890 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.112 -13.452 1.918 17.553 hybrid contribution -0.440 1.601 -0.087 1.663 sum -11.552 -11.850 1.831 16.650 Atomic orbital electron populations 1.23896 0.95053 1.07623 1.05695 1.24076 0.95100 0.94132 0.95309 1.17937 0.82897 0.99720 0.85275 1.44409 1.72557 0.99161 1.12638 1.19315 1.20107 0.92263 1.07798 0.90480 1.25167 0.96234 0.99083 0.98603 1.70027 1.25243 1.18997 1.38923 0.86137 0.78260 0.81403 0.80437 1.20117 1.21713 1.21484 1.19797 0.87728 0.85426 0.98461 1.24417 0.90936 0.98871 0.91104 1.21205 0.96910 1.07823 0.96557 1.21008 0.97343 1.10322 0.95160 1.20165 0.87771 1.03850 0.88769 1.59806 0.98287 1.46355 1.11221 1.22445 0.89539 0.94845 1.00902 1.21605 0.96123 1.02327 0.95040 1.21624 0.96947 1.00221 0.96405 1.21019 0.97576 1.03695 0.87225 0.86299 1.23348 0.78559 0.73569 0.92117 1.90789 1.41160 1.43843 1.63347 1.84513 1.44012 1.74621 1.29731 1.21881 0.95972 1.01632 0.86646 1.84085 1.22221 1.64208 1.37453 0.80144 0.87708 0.94740 0.93403 0.89747 0.92536 0.84360 0.84740 0.93283 0.89402 0.90339 0.90141 0.89958 0.91248 0.73170 0.89004 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.37 19.25 29.55 0.57 -6.80 16 2 C -0.08 -2.11 11.16 -37.13 -0.41 -2.52 16 3 C 0.27 6.43 5.43 -6.83 -0.04 6.40 16 4 N -0.57 -13.77 2.50 -177.95 -0.44 -14.21 16 5 C -0.27 -6.92 9.67 -15.06 -0.15 -7.06 16 6 H 0.08 1.94 7.84 -52.49 -0.41 1.53 16 7 C 0.01 0.24 5.12 -17.43 -0.09 0.15 16 8 N -0.89 -25.04 9.15 55.49 0.51 -24.53 16 9 Si 0.91 21.24 29.56 -169.99 -5.03 16.21 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.21 4.41 6.21 -5.19 -0.03 4.38 16 14 C 0.00 0.03 6.49 -35.65 -0.23 -0.20 16 15 C -0.20 -4.17 10.80 -39.71 -0.43 -4.60 16 16 C -0.22 -4.05 10.16 -39.40 -0.40 -4.45 16 17 C 0.14 2.62 6.57 -15.20 -0.10 2.52 16 18 N -0.43 -6.58 4.74 -173.76 -0.82 -7.40 16 19 C 0.05 0.62 5.31 -3.84 -0.02 0.60 16 20 C -0.11 -1.03 6.09 -26.65 -0.16 -1.19 16 21 C -0.11 -1.05 5.22 -26.61 -0.14 -1.19 16 22 C -0.08 -0.82 2.79 -91.69 -0.26 -1.08 16 23 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 24 C 0.48 5.56 7.63 36.01 0.27 5.84 16 25 O -0.50 -7.81 16.74 -18.75 -0.31 -8.13 16 26 O -0.52 -4.23 13.35 -39.24 -0.52 -4.75 16 27 C 0.07 0.97 3.50 -3.83 -0.01 0.96 16 28 O -0.19 -3.93 9.79 4.61 0.05 -3.89 16 29 H 0.18 3.87 7.80 -54.09 -0.42 3.45 16 30 H 0.11 2.72 6.40 -51.93 -0.33 2.39 16 31 H 0.03 0.74 8.01 -51.93 -0.42 0.33 16 32 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.08 1.58 8.04 -51.93 -0.42 1.16 16 34 H 0.06 1.06 7.97 -51.93 -0.41 0.65 16 35 H 0.14 2.68 8.06 -52.49 -0.42 2.26 16 36 H 0.13 2.18 7.84 -52.49 -0.41 1.77 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 1.11 7.37 -51.93 -0.38 0.72 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.41 1.73 9.10 45.56 0.41 2.14 16 44 H 0.09 1.48 7.93 -51.93 -0.41 1.07 16 45 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 LS Contribution 380.15 15.07 5.73 5.73 Total: -1.00 -33.11 380.15 -8.19 -41.30 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -5.72 Total: 7.92 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -1.63 Total: -8.25 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -0.76 Total: -46.15 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.79 Total: -16.77 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.11 -8.19 -41.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588394910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.956 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds