Wall clock time and date at job start Tue Mar 31 2020 17:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47301 * 68.30222 * 3 2 1 5 5 C 1.36936 * 120.00029 * 97.97472 * 4 3 2 6 6 H 1.07994 * 120.00227 * 155.77778 * 5 4 3 7 7 C 1.38817 * 120.00080 * 335.78320 * 5 4 3 8 8 N 1.31622 * 119.99759 * 351.11020 * 7 5 4 9 9 Si 1.86796 * 120.00051 * 171.10986 * 7 5 4 10 10 H 1.48499 * 109.47319 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46947 * 120.00167 * 9 7 5 12 12 H 1.48506 * 109.47283 * 240.00099 * 9 7 5 13 13 C 1.46494 * 119.99847 * 277.97656 * 4 3 2 14 14 C 1.50706 * 109.46978 * 90.00050 * 13 4 3 15 15 C 1.34440 * 125.72171 * 89.72014 * 14 13 4 16 16 C 1.41424 * 106.92415 * 179.85358 * 15 14 13 17 17 C 1.35351 * 106.77454 * 0.40198 * 16 15 14 18 18 N 1.39254 * 125.85818 * 179.75385 * 17 16 15 19 19 C 1.46844 * 111.00051 * 304.23009 * 18 17 16 20 20 C 1.53035 * 109.52495 * 174.16142 * 19 18 17 21 21 C 1.53114 * 109.27828 * 59.18285 * 20 19 18 22 22 C 1.53119 * 109.16057 * 302.34457 * 21 20 19 23 23 H 1.09001 * 109.50673 * 297.71962 * 22 21 20 24 24 C 1.50704 * 109.50440 * 177.59446 * 22 21 20 25 25 O 1.20825 * 119.99784 * 240.19657 * 24 22 21 26 26 O 1.34224 * 119.99619 * 60.19988 * 24 22 21 27 27 C 1.46846 * 111.00102 * 180.02562 * 18 17 16 28 28 O 1.34367 * 108.28284 * 359.75129 * 17 16 15 29 29 H 4.40646 * 5.51413 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.47367 * 188.30096 * 3 2 1 31 31 H 1.09004 * 109.47684 * 308.30231 * 3 2 1 32 32 H 0.96995 * 119.99690 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47358 * 209.99851 * 13 4 3 34 34 H 1.09004 * 109.47445 * 329.99881 * 13 4 3 35 35 H 1.07998 * 126.53443 * 359.97438 * 15 14 13 36 36 H 1.07998 * 126.60661 * 180.15235 * 16 15 14 37 37 H 1.09004 * 109.46577 * 294.17973 * 19 18 17 38 38 H 1.09005 * 109.45908 * 54.14739 * 19 18 17 39 39 H 1.09005 * 109.50383 * 299.23928 * 20 19 18 40 40 H 1.09004 * 109.53898 * 179.14496 * 20 19 18 41 41 H 1.09006 * 109.52545 * 182.44236 * 21 20 19 42 42 H 1.08997 * 109.52716 * 62.25075 * 21 20 19 43 43 H 0.96704 * 116.99753 * 179.97438 * 26 24 22 44 44 H 1.09001 * 109.46495 * 305.85907 * 27 18 17 45 45 H 1.09003 * 109.46037 * 65.83177 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5098 -1.2834 5 6 3.5176 0.3632 -2.2664 6 1 4.2176 0.0480 -3.0259 7 6 3.0061 1.6536 -2.2866 8 7 2.0264 1.9860 -1.4728 9 14 3.7080 2.9181 -3.4688 10 1 4.7939 2.2979 -4.2696 11 1 2.6345 3.3968 -4.3763 12 1 4.2541 4.0652 -2.6998 13 6 3.2134 -1.9541 -1.5150 14 6 1.9138 -2.4402 -2.1032 15 6 1.6214 -2.5063 -3.4137 16 6 0.3076 -3.0194 -3.5171 17 6 -0.1303 -3.2292 -2.2537 18 7 -1.3810 -3.7262 -1.8959 19 6 -2.4565 -2.9092 -2.4723 20 6 -3.8085 -3.5645 -2.1815 21 6 -3.9938 -3.6905 -0.6669 22 6 -2.8350 -4.5046 -0.0847 23 1 -2.8490 -5.5100 -0.5056 24 6 -2.9781 -4.5834 1.4135 25 8 -2.1104 -4.1392 2.1274 26 8 -4.0695 -5.1470 1.9546 27 6 -1.5113 -3.8220 -0.4363 28 8 0.8488 -2.8758 -1.4041 29 1 -1.0500 0.0001 -0.0002 30 1 3.0089 1.0177 0.1484 31 1 3.0097 -0.6361 0.8065 32 1 1.6688 2.8874 -1.4872 33 1 4.0278 -2.1672 -2.2075 34 1 3.3977 -2.4643 -0.5695 35 1 2.2675 -2.2234 -4.2317 36 1 -0.2418 -3.2040 -4.4284 37 1 -2.4330 -1.9132 -2.0299 38 1 -2.3151 -2.8311 -3.5503 39 1 -3.8379 -4.5552 -2.6354 40 1 -4.6079 -2.9505 -2.5962 41 1 -4.9363 -4.1960 -0.4559 42 1 -4.0035 -2.6976 -0.2172 43 1 -4.1163 -5.1748 2.9201 44 1 -0.6834 -4.4068 -0.0354 45 1 -1.4924 -2.8218 -0.0036 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588394910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:03 Heat of formation + Delta-G solvation = -6.345933 kcal Electronic energy + Delta-G solvation = -29437.614514 eV Core-core repulsion = 25423.622989 eV Total energy + Delta-G solvation = -4013.991525 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.36582 -41.63871 -39.68137 -37.95846 -37.17266 -34.94093 -34.03320 -33.52844 -33.02282 -32.29138 -30.24037 -28.00589 -27.13271 -26.06205 -25.04279 -23.35475 -23.03248 -21.88659 -21.20292 -20.66122 -19.36862 -19.25210 -18.77096 -18.38639 -17.43908 -17.11655 -16.98809 -16.72563 -15.99768 -15.92232 -15.64373 -15.48337 -15.37462 -15.00142 -14.66611 -14.57746 -14.31555 -13.80445 -13.65274 -13.48276 -13.45417 -13.37303 -13.05442 -12.80800 -12.70378 -12.60262 -12.35033 -12.22827 -12.15604 -11.98364 -11.88613 -11.71778 -11.42199 -11.00435 -10.94864 -10.78218 -10.43761 -10.30159 -9.01025 -8.55211 -7.84386 -5.37868 0.89625 1.11486 1.46875 1.49224 1.58384 1.71989 1.87257 2.08052 2.33735 2.49796 2.58750 2.91647 3.33575 3.37242 3.58807 3.82980 3.84076 3.97479 4.01780 4.09993 4.21691 4.23671 4.31241 4.40421 4.48943 4.55668 4.59088 4.67783 4.74696 4.79867 4.87246 4.91858 4.97497 5.04943 5.09381 5.18821 5.28825 5.30710 5.53646 5.56679 5.60434 5.64445 5.75749 6.04233 6.27678 6.51661 6.93041 7.06295 7.31682 7.73131 8.18889 9.16215 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.003542 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.673059 B = 7902.217519 C = 8286.283869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 C -0.104 4.104 3 C 0.267 3.733 4 N -0.582 5.582 5 C -0.266 4.266 6 H 0.084 0.916 7 C -0.042 4.042 8 N -0.919 5.919 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.301 1.301 12 H -0.291 1.291 13 C 0.213 3.787 14 C -0.025 4.025 15 C -0.210 4.210 16 C -0.227 4.227 17 C 0.139 3.861 18 N -0.424 5.424 19 C 0.044 3.956 20 C -0.103 4.103 21 C -0.110 4.110 22 C -0.070 4.070 23 H 0.144 0.856 24 C 0.492 3.508 25 O -0.554 6.554 26 O -0.501 6.501 27 C 0.072 3.928 28 O -0.204 6.204 29 H 0.201 0.799 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.246 0.754 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.145 0.855 36 H 0.160 0.840 37 H 0.024 0.976 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.056 0.944 43 H 0.429 0.571 44 H 0.070 0.930 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.122 -15.059 0.903 19.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.329 4.329 2 C -0.107 4.107 3 C 0.142 3.858 4 N -0.300 5.300 5 C -0.396 4.396 6 H 0.102 0.898 7 C -0.238 4.238 8 N -0.563 5.563 9 Si 0.797 3.203 10 H -0.186 1.186 11 H -0.229 1.229 12 H -0.218 1.218 13 C 0.086 3.914 14 C -0.079 4.079 15 C -0.230 4.230 16 C -0.249 4.249 17 C -0.006 4.006 18 N -0.147 5.147 19 C -0.081 4.081 20 C -0.140 4.140 21 C -0.148 4.148 22 C -0.089 4.089 23 H 0.161 0.839 24 C 0.335 3.665 25 O -0.444 6.444 26 O -0.314 6.314 27 C -0.055 4.055 28 O -0.099 6.099 29 H 0.218 0.782 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.121 0.879 34 H 0.089 0.911 35 H 0.163 0.837 36 H 0.178 0.822 37 H 0.043 0.957 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.123 0.877 41 H 0.131 0.869 42 H 0.075 0.925 43 H 0.291 0.709 44 H 0.088 0.912 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -12.946 -15.234 0.846 20.010 hybrid contribution 0.052 1.991 0.282 2.011 sum -12.894 -13.243 1.129 18.518 Atomic orbital electron populations 1.24467 0.95874 1.07154 1.05370 1.24524 0.95887 0.94591 0.95702 1.17889 0.82518 0.99053 0.86312 1.44477 1.72780 1.00448 1.12325 1.19626 1.19651 0.92693 1.07588 0.89784 1.25823 0.96880 1.00839 1.00285 1.70209 1.26829 1.18571 1.40696 0.85192 0.77484 0.79155 0.78479 1.18612 1.22905 1.21789 1.19900 0.88123 0.83535 0.99808 1.24346 0.91356 1.00678 0.91536 1.21470 0.97803 1.07295 0.96464 1.21280 0.96989 1.10490 0.96118 1.20790 0.88486 1.02539 0.88835 1.59914 0.97350 1.46022 1.11405 1.22630 0.90838 0.93881 1.00797 1.21627 0.93935 1.03369 0.95083 1.21663 0.97279 0.99579 0.96234 1.21001 0.95864 1.04750 0.87267 0.83852 1.23398 0.78388 0.72536 0.92188 1.90787 1.43059 1.46168 1.64429 1.84456 1.42011 1.73359 1.31604 1.21739 0.97882 0.99867 0.86045 1.84060 1.22854 1.64621 1.38379 0.78225 0.89979 0.92426 0.94452 0.87922 0.91086 0.83712 0.82227 0.95735 0.88861 0.88437 0.87699 0.86881 0.92504 0.70906 0.91165 0.95312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -15.42 19.25 74.32 1.43 -13.98 16 2 C -0.10 -5.41 11.16 31.12 0.35 -5.06 16 3 C 0.27 13.19 5.43 84.57 0.46 13.65 16 4 N -0.58 -28.34 2.50 -716.91 -1.79 -30.13 16 5 C -0.27 -13.87 9.67 84.03 0.81 -13.06 16 6 H 0.08 4.18 7.84 -2.91 -0.02 4.15 16 7 C -0.04 -2.27 5.12 84.86 0.43 -1.84 16 8 N -0.92 -52.99 9.15 21.65 0.20 -52.79 16 9 Si 0.97 44.15 29.56 68.60 2.03 46.18 16 10 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 11 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 12 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 13 C 0.21 8.76 6.21 85.64 0.53 9.29 16 14 C -0.03 -1.09 6.49 24.82 0.16 -0.93 16 15 C -0.21 -8.49 10.80 22.19 0.24 -8.25 16 16 C -0.23 -8.31 10.16 22.39 0.23 -8.08 16 17 C 0.14 5.19 6.57 82.85 0.54 5.74 16 18 N -0.42 -12.51 4.74 -813.40 -3.85 -16.36 16 19 C 0.04 1.06 5.31 86.33 0.46 1.52 16 20 C -0.10 -1.50 6.09 30.64 0.19 -1.31 16 21 C -0.11 -1.68 5.22 30.67 0.16 -1.52 16 22 C -0.07 -1.38 2.79 -11.49 -0.03 -1.41 16 23 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 24 C 0.49 10.65 7.63 71.24 0.54 11.19 16 25 O -0.55 -17.31 16.74 21.97 0.37 -16.94 16 26 O -0.50 -6.77 13.35 -51.36 -0.69 -7.45 16 27 C 0.07 2.14 3.50 86.33 0.30 2.44 16 28 O -0.20 -8.82 9.79 -6.43 -0.06 -8.88 16 29 H 0.20 8.74 7.80 -4.42 -0.03 8.71 16 30 H 0.08 4.42 6.40 -2.39 -0.02 4.40 16 31 H 0.06 2.51 8.01 -2.38 -0.02 2.49 16 32 H 0.25 14.09 8.31 -92.71 -0.77 13.31 16 33 H 0.10 3.76 8.04 -2.39 -0.02 3.74 16 34 H 0.07 2.66 7.97 -2.38 -0.02 2.64 16 35 H 0.15 5.53 8.06 -2.91 -0.02 5.51 16 36 H 0.16 4.88 7.84 -2.91 -0.02 4.85 16 37 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.09 2.16 7.37 -2.38 -0.02 2.14 16 39 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.43 2.49 9.10 -74.05 -0.67 1.82 16 44 H 0.07 2.35 7.93 -2.39 -0.02 2.33 16 45 H 0.03 1.04 8.08 -2.39 -0.02 1.02 16 Total: -1.00 -73.54 380.15 3.34 -70.20 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.33 Total: 27.78 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 6.81 Total: -11.62 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -5.44 Total: -99.27 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -0.38 Total: -33.27 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -73.54 3.34 -70.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588394910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.856 kcal (2) G-P(sol) polarization free energy of solvation -73.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds