Wall clock time and date at job start Tue Mar 31 2020 16:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33088 * 120.00392 * 2 1 4 4 C 1.50700 * 119.99666 * 353.93082 * 3 2 1 5 5 N 1.46497 * 109.47402 * 234.80643 * 4 3 2 6 6 C 1.34779 * 120.00052 * 180.02562 * 5 4 3 7 7 O 1.21589 * 120.00110 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99916 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00091 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.46727 * 324.99350 * 9 8 6 11 11 C 1.53001 * 109.47192 * 204.99584 * 9 8 6 12 12 C 1.50697 * 109.46827 * 64.99644 * 11 9 8 13 13 H 1.07998 * 120.00432 * 0.02562 * 12 11 9 14 14 C 1.37888 * 119.99603 * 179.72295 * 12 11 9 15 15 N 1.31507 * 119.99800 * 0.27863 * 14 12 11 16 16 Si 1.86801 * 119.99628 * 180.27566 * 14 12 11 17 17 H 1.48502 * 109.46963 * 90.00385 * 16 14 12 18 18 H 1.48508 * 109.46799 * 209.99984 * 16 14 12 19 19 H 1.48494 * 109.47539 * 330.00132 * 16 14 12 20 20 C 1.50703 * 109.47165 * 84.99524 * 9 8 6 21 21 C 1.38233 * 119.99991 * 39.72547 * 20 9 8 22 22 C 1.38239 * 119.99753 * 179.78650 * 21 20 9 23 23 C 1.38233 * 120.00045 * 0.44458 * 22 21 20 24 24 C 1.38235 * 120.00018 * 359.80996 * 23 22 21 25 25 C 1.38236 * 120.00134 * 359.97438 * 24 23 22 26 26 C 1.46955 * 120.00133 * 179.97438 * 2 1 3 27 27 O 1.21528 * 120.00033 * 180.02562 * 26 2 1 28 28 O 1.34795 * 119.99815 * 359.97438 * 26 2 1 29 29 H 1.09003 * 109.47008 * 85.17246 * 1 2 3 30 30 H 1.09001 * 109.46882 * 205.17122 * 1 2 3 31 31 H 1.09001 * 109.46892 * 325.17538 * 1 2 3 32 32 H 1.07996 * 120.00333 * 173.93448 * 3 2 1 33 33 H 1.09003 * 109.47148 * 114.80172 * 4 3 2 34 34 H 1.09001 * 109.47135 * 354.81105 * 4 3 2 35 35 H 0.97004 * 120.00000 * 0.02562 * 5 4 3 36 36 H 0.97002 * 119.99854 * 359.97438 * 8 6 5 37 37 H 1.09002 * 109.46870 * 304.99644 * 11 9 8 38 38 H 1.08994 * 109.47279 * 184.99816 * 11 9 8 39 39 H 0.97009 * 119.99787 * 179.97438 * 15 14 12 40 40 H 1.08003 * 120.00379 * 0.02562 * 21 20 9 41 41 H 1.08003 * 119.99524 * 180.27632 * 22 21 20 42 42 H 1.08001 * 120.00190 * 179.83337 * 23 22 21 43 43 H 1.08000 * 120.00138 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00126 * 179.97438 * 25 24 23 45 45 H 0.96705 * 117.00244 * 180.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1525 0.0000 4 6 1.4254 2.4540 -0.1380 5 7 1.9740 3.2152 -1.2630 6 6 1.4584 4.4203 -1.5766 7 8 0.5375 4.8755 -0.9261 8 7 1.9628 5.1204 -2.6119 9 6 1.4027 6.4306 -2.9525 10 1 0.3287 6.4260 -2.7663 11 6 1.6628 6.7278 -4.4306 12 6 0.9094 5.7386 -5.2820 13 1 0.3052 4.9745 -4.8156 14 6 0.9866 5.8128 -6.6567 15 7 1.7220 6.7434 -7.2247 16 14 0.0466 4.5913 -7.7121 17 1 -1.3055 5.1298 -8.0073 18 1 0.7797 4.3696 -8.9845 19 1 -0.0816 3.3035 -6.9839 20 6 2.0552 7.4917 -2.1043 21 6 3.4100 7.4271 -1.8378 22 6 4.0093 8.4029 -1.0634 23 6 3.2521 9.4382 -0.5480 24 6 1.8962 9.4999 -0.8102 25 6 1.2977 8.5265 -1.5883 26 6 2.2418 -1.2727 0.0006 27 8 3.4571 -1.2726 0.0010 28 8 1.5678 -2.4400 0.0016 29 1 -0.3633 0.0865 -1.0240 30 1 -0.3633 -0.9301 0.4371 31 1 -0.3633 0.8436 0.5869 32 1 3.2479 1.1551 0.0988 33 1 1.5321 3.0332 0.7792 34 1 0.3699 2.2497 -0.3178 35 1 2.7084 2.8519 -1.7822 36 1 2.6972 4.7570 -3.1311 37 1 2.7301 6.6449 -4.6355 38 1 1.3256 7.7379 -4.6629 39 1 1.7765 6.7954 -8.1918 40 1 4.0011 6.6165 -2.2377 41 1 5.0687 8.3549 -0.8589 42 1 3.7198 10.1991 0.0592 43 1 1.3045 10.3085 -0.4072 44 1 0.2383 8.5745 -1.7928 45 1 2.0945 -3.2511 0.0023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588972038.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:56 Heat of formation + Delta-G solvation = -88.417076 kcal Electronic energy + Delta-G solvation = -27559.863893 eV Core-core repulsion = 23542.313496 eV Total energy + Delta-G solvation = -4017.550397 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.53701 -39.82320 -38.64454 -36.83172 -36.21658 -35.13273 -33.65958 -32.70352 -31.02836 -30.42955 -28.93867 -28.18861 -26.42808 -24.83468 -23.28274 -22.26803 -21.93392 -20.82455 -19.85927 -19.27136 -18.19274 -17.81540 -17.12928 -16.82831 -16.16702 -16.02152 -15.78312 -15.25327 -14.79946 -14.66819 -14.57044 -14.18408 -13.98991 -13.62273 -13.38681 -13.31282 -13.03342 -12.89159 -12.62175 -12.45765 -12.27971 -12.09901 -11.91513 -11.76714 -11.52962 -11.11716 -10.92249 -10.88308 -10.72565 -10.60792 -10.44949 -9.90919 -9.76827 -9.56911 -9.29260 -8.95688 -8.51785 -8.45561 -8.31481 -8.15531 -6.09142 -4.12317 0.63713 1.80464 1.83021 2.48305 2.71528 3.22329 3.27225 3.34244 3.37041 3.65853 4.23223 4.39643 4.47457 4.53053 4.75308 4.78428 5.09587 5.27690 5.28681 5.29865 5.37371 5.39898 5.45921 5.51833 5.57351 5.66997 5.93435 5.96523 5.98752 6.06050 6.12476 6.16676 6.37982 6.44706 6.56336 6.62571 6.87007 6.87834 6.95643 7.11205 7.27871 7.43277 7.51703 7.54001 7.67721 7.87979 8.26099 8.47591 8.93737 9.05190 9.52643 11.01404 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.007656 B = 0.003434 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3656.434701 B = 8152.860365 C =10932.339287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.147 4.147 3 C -0.071 4.071 4 C 0.160 3.840 5 N -0.750 5.750 6 C 0.706 3.294 7 O -0.596 6.596 8 N -0.714 5.714 9 C 0.202 3.798 10 H 0.087 0.913 11 C 0.024 3.976 12 C -0.519 4.519 13 H 0.058 0.942 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.071 4.071 21 C -0.107 4.107 22 C -0.126 4.126 23 C -0.136 4.136 24 C -0.123 4.123 25 C -0.108 4.108 26 C 0.522 3.478 27 O -0.518 6.518 28 O -0.510 6.510 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.136 0.864 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.397 0.603 36 H 0.397 0.603 37 H 0.024 0.976 38 H 0.035 0.965 39 H 0.261 0.739 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.286 -9.449 15.200 18.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.149 4.149 3 C -0.090 4.090 4 C 0.036 3.964 5 N -0.408 5.408 6 C 0.406 3.594 7 O -0.475 6.475 8 N -0.367 5.367 9 C 0.098 3.902 10 H 0.105 0.895 11 C -0.014 4.014 12 C -0.557 4.557 13 H 0.076 0.924 14 C -0.141 4.141 15 N -0.531 5.531 16 Si 0.720 3.280 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.072 4.072 21 C -0.125 4.125 22 C -0.144 4.144 23 C -0.154 4.154 24 C -0.141 4.141 25 C -0.126 4.126 26 C 0.367 3.633 27 O -0.408 6.408 28 O -0.322 6.322 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.153 0.847 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.231 0.769 36 H 0.231 0.769 37 H 0.042 0.958 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.138 0.862 45 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 1.553 -8.580 15.608 17.878 hybrid contribution 0.731 -1.567 -1.189 2.098 sum 2.284 -10.147 14.419 17.779 Atomic orbital electron populations 1.20870 0.89549 1.03700 1.03531 1.20714 0.97257 0.89483 1.07490 1.23816 1.01285 0.92947 0.90920 1.20210 0.97597 0.88094 0.90548 1.44940 1.40702 1.19726 1.35390 1.15926 0.82198 0.79970 0.81351 1.90883 1.31454 1.70534 1.54599 1.45129 1.39184 1.20400 1.31940 1.20127 0.96956 0.77328 0.95818 0.89512 1.19398 0.97883 0.98083 0.86015 1.21140 1.29062 1.14639 0.90890 0.92360 1.24987 0.95382 0.95642 0.98131 1.69959 1.39518 1.33213 1.10410 0.86600 0.80017 0.81592 0.79823 1.20621 1.21295 1.19952 1.20604 0.93979 0.96424 0.96239 1.20892 0.94533 0.98653 0.98417 1.21038 0.99271 0.95259 0.98840 1.20986 0.94335 0.98752 1.01302 1.21040 0.94954 0.98855 0.99299 1.21019 0.99896 0.94482 0.97213 1.21049 0.85529 0.84757 0.71995 1.90922 1.15180 1.88233 1.46434 1.84606 1.44928 1.16947 1.85697 0.90359 0.90503 0.90390 0.84656 0.89808 0.89842 0.76942 0.76868 0.95754 0.94669 0.92884 0.86647 0.86822 0.86903 0.86643 0.86168 0.72889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 8.81 36.01 0.32 -0.64 16 2 C -0.15 -1.36 5.99 -102.88 -0.62 -1.97 16 3 C -0.07 -0.65 9.20 -36.10 -0.33 -0.98 16 4 C 0.16 1.74 5.75 -5.20 -0.03 1.71 16 5 N -0.75 -9.69 5.55 -66.41 -0.37 -10.06 16 6 C 0.71 12.27 8.52 -86.92 -0.74 11.53 16 7 O -0.60 -12.44 16.01 5.29 0.08 -12.36 16 8 N -0.71 -12.62 4.02 -59.81 -0.24 -12.86 16 9 C 0.20 4.08 2.12 -69.08 -0.15 3.93 16 10 H 0.09 1.92 7.44 -51.93 -0.39 1.54 16 11 C 0.02 0.56 4.50 -27.88 -0.13 0.43 16 12 C -0.52 -13.59 8.84 -34.44 -0.30 -13.90 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -25.43 13.29 55.43 0.74 -24.70 16 16 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 C -0.07 -1.31 4.92 -104.62 -0.51 -1.83 16 21 C -0.11 -1.79 9.33 -39.58 -0.37 -2.16 16 22 C -0.13 -1.88 10.05 -39.58 -0.40 -2.27 16 23 C -0.14 -1.94 10.05 -39.58 -0.40 -2.34 16 24 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 25 C -0.11 -1.87 9.67 -39.58 -0.38 -2.26 16 26 C 0.52 5.19 8.25 34.26 0.28 5.47 16 27 O -0.52 -6.59 17.01 -19.29 -0.33 -6.92 16 28 O -0.51 -3.70 12.61 -40.75 -0.51 -4.22 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.55 7.54 -51.93 -0.39 0.16 16 31 H 0.08 0.57 6.70 -51.93 -0.35 0.23 16 32 H 0.14 1.23 7.51 -52.49 -0.39 0.83 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 0.94 5.79 -51.93 -0.30 0.64 16 35 H 0.40 4.26 8.48 -40.82 -0.35 3.91 16 36 H 0.40 6.40 8.62 -40.82 -0.35 6.05 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.12 1.81 7.71 -52.48 -0.40 1.40 16 41 H 0.11 1.40 8.06 -52.48 -0.42 0.97 16 42 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 43 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 44 H 0.12 2.00 8.04 -52.49 -0.42 1.58 16 45 H 0.41 1.21 9.11 45.56 0.42 1.62 16 LS Contribution 390.56 15.07 5.89 5.89 Total: -1.00 -34.19 390.56 -9.45 -43.63 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -5.43 Total: 11.69 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -4.25 Total: -6.00 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.13 Total: -47.62 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.76 Total: -23.50 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.19 -9.45 -43.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588972038.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.783 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds