Wall clock time and date at job start Tue Mar 31 2020 16:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33088 * 120.00392 * 2 1 4 4 C 1.50700 * 119.99666 * 353.93082 * 3 2 1 5 5 N 1.46497 * 109.47402 * 234.80643 * 4 3 2 6 6 C 1.34779 * 120.00052 * 180.02562 * 5 4 3 7 7 O 1.21589 * 120.00110 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99916 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00091 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.46727 * 324.99350 * 9 8 6 11 11 C 1.53001 * 109.47192 * 204.99584 * 9 8 6 12 12 C 1.50697 * 109.46827 * 64.99644 * 11 9 8 13 13 H 1.07998 * 120.00432 * 0.02562 * 12 11 9 14 14 C 1.37888 * 119.99603 * 179.72295 * 12 11 9 15 15 N 1.31507 * 119.99800 * 0.27863 * 14 12 11 16 16 Si 1.86801 * 119.99628 * 180.27566 * 14 12 11 17 17 H 1.48502 * 109.46963 * 90.00385 * 16 14 12 18 18 H 1.48508 * 109.46799 * 209.99984 * 16 14 12 19 19 H 1.48494 * 109.47539 * 330.00132 * 16 14 12 20 20 C 1.50703 * 109.47165 * 84.99524 * 9 8 6 21 21 C 1.38233 * 119.99991 * 39.72547 * 20 9 8 22 22 C 1.38239 * 119.99753 * 179.78650 * 21 20 9 23 23 C 1.38233 * 120.00045 * 0.44458 * 22 21 20 24 24 C 1.38235 * 120.00018 * 359.80996 * 23 22 21 25 25 C 1.38236 * 120.00134 * 359.97438 * 24 23 22 26 26 C 1.46955 * 120.00133 * 179.97438 * 2 1 3 27 27 O 1.21528 * 120.00033 * 180.02562 * 26 2 1 28 28 O 1.34795 * 119.99815 * 359.97438 * 26 2 1 29 29 H 1.09003 * 109.47008 * 85.17246 * 1 2 3 30 30 H 1.09001 * 109.46882 * 205.17122 * 1 2 3 31 31 H 1.09001 * 109.46892 * 325.17538 * 1 2 3 32 32 H 1.07996 * 120.00333 * 173.93448 * 3 2 1 33 33 H 1.09003 * 109.47148 * 114.80172 * 4 3 2 34 34 H 1.09001 * 109.47135 * 354.81105 * 4 3 2 35 35 H 0.97004 * 120.00000 * 0.02562 * 5 4 3 36 36 H 0.97002 * 119.99854 * 359.97438 * 8 6 5 37 37 H 1.09002 * 109.46870 * 304.99644 * 11 9 8 38 38 H 1.08994 * 109.47279 * 184.99816 * 11 9 8 39 39 H 0.97009 * 119.99787 * 179.97438 * 15 14 12 40 40 H 1.08003 * 120.00379 * 0.02562 * 21 20 9 41 41 H 1.08003 * 119.99524 * 180.27632 * 22 21 20 42 42 H 1.08001 * 120.00190 * 179.83337 * 23 22 21 43 43 H 1.08000 * 120.00138 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00126 * 179.97438 * 25 24 23 45 45 H 0.96705 * 117.00244 * 180.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1525 0.0000 4 6 1.4254 2.4540 -0.1380 5 7 1.9740 3.2152 -1.2630 6 6 1.4584 4.4203 -1.5766 7 8 0.5375 4.8755 -0.9261 8 7 1.9628 5.1204 -2.6119 9 6 1.4027 6.4306 -2.9525 10 1 0.3287 6.4260 -2.7663 11 6 1.6628 6.7278 -4.4306 12 6 0.9094 5.7386 -5.2820 13 1 0.3052 4.9745 -4.8156 14 6 0.9866 5.8128 -6.6567 15 7 1.7220 6.7434 -7.2247 16 14 0.0466 4.5913 -7.7121 17 1 -1.3055 5.1298 -8.0073 18 1 0.7797 4.3696 -8.9845 19 1 -0.0816 3.3035 -6.9839 20 6 2.0552 7.4917 -2.1043 21 6 3.4100 7.4271 -1.8378 22 6 4.0093 8.4029 -1.0634 23 6 3.2521 9.4382 -0.5480 24 6 1.8962 9.4999 -0.8102 25 6 1.2977 8.5265 -1.5883 26 6 2.2418 -1.2727 0.0006 27 8 3.4571 -1.2726 0.0010 28 8 1.5678 -2.4400 0.0016 29 1 -0.3633 0.0865 -1.0240 30 1 -0.3633 -0.9301 0.4371 31 1 -0.3633 0.8436 0.5869 32 1 3.2479 1.1551 0.0988 33 1 1.5321 3.0332 0.7792 34 1 0.3699 2.2497 -0.3178 35 1 2.7084 2.8519 -1.7822 36 1 2.6972 4.7570 -3.1311 37 1 2.7301 6.6449 -4.6355 38 1 1.3256 7.7379 -4.6629 39 1 1.7765 6.7954 -8.1918 40 1 4.0011 6.6165 -2.2377 41 1 5.0687 8.3549 -0.8589 42 1 3.7198 10.1991 0.0592 43 1 1.3045 10.3085 -0.4072 44 1 0.2383 8.5745 -1.7928 45 1 2.0945 -3.2511 0.0023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588972038.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:55 Heat of formation + Delta-G solvation = -110.955788 kcal Electronic energy + Delta-G solvation = -27560.841245 eV Core-core repulsion = 23542.313496 eV Total energy + Delta-G solvation = -4018.527749 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.36175 -41.13698 -39.89614 -37.71210 -37.06829 -36.60016 -34.84270 -34.61380 -32.37570 -31.65618 -30.53815 -29.20456 -27.29612 -26.49821 -24.17913 -23.75394 -23.32226 -22.15724 -21.27170 -20.20265 -19.08730 -18.90123 -18.55048 -17.93865 -17.69104 -17.14446 -16.74043 -16.50275 -16.44891 -15.93231 -15.86768 -15.28235 -15.18697 -14.89835 -14.46638 -14.24071 -14.17454 -14.15168 -14.06346 -13.63774 -13.62440 -13.39060 -12.96065 -12.88473 -12.64496 -12.62899 -12.56719 -12.43144 -12.11722 -11.84403 -11.68112 -11.55860 -11.32639 -11.28944 -10.57861 -10.50839 -10.18452 -9.74251 -9.67360 -9.47607 -8.18519 -6.28152 -0.13738 0.54588 0.59367 1.40353 1.42057 1.51720 1.64133 1.99810 2.12496 2.26498 2.41251 2.98995 3.15360 3.48255 3.72117 3.80658 4.03793 4.07397 4.10282 4.24044 4.29068 4.35286 4.47166 4.58316 4.68898 4.76655 4.78693 4.82673 4.83032 4.97090 5.16193 5.21111 5.23356 5.32130 5.36322 5.45841 5.49343 5.55753 5.64348 5.65712 5.67592 5.80540 5.90167 6.12450 6.19217 6.23955 6.84765 6.92109 7.17175 7.40782 7.67719 8.92207 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.007656 B = 0.003434 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3656.434701 B = 8152.860365 C =10932.339287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.146 4.146 3 C -0.065 4.065 4 C 0.161 3.839 5 N -0.735 5.735 6 C 0.705 3.295 7 O -0.633 6.633 8 N -0.712 5.712 9 C 0.220 3.780 10 H 0.058 0.942 11 C 0.038 3.962 12 C -0.527 4.527 13 H 0.054 0.946 14 C 0.011 3.989 15 N -0.926 5.926 16 Si 0.955 3.045 17 H -0.278 1.278 18 H -0.282 1.282 19 H -0.267 1.267 20 C -0.097 4.097 21 C -0.120 4.120 22 C -0.126 4.126 23 C -0.130 4.130 24 C -0.125 4.125 25 C -0.132 4.132 26 C 0.526 3.474 27 O -0.550 6.550 28 O -0.503 6.503 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.139 0.861 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.409 0.591 36 H 0.404 0.596 37 H 0.012 0.988 38 H 0.005 0.995 39 H 0.263 0.737 40 H 0.120 0.880 41 H 0.145 0.855 42 H 0.150 0.850 43 H 0.143 0.857 44 H 0.113 0.887 45 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.881 -10.314 16.364 19.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.149 4.149 3 C -0.084 4.084 4 C 0.038 3.962 5 N -0.392 5.392 6 C 0.405 3.595 7 O -0.514 6.514 8 N -0.365 5.365 9 C 0.114 3.886 10 H 0.077 0.923 11 C 0.000 4.000 12 C -0.565 4.565 13 H 0.072 0.928 14 C -0.188 4.188 15 N -0.567 5.567 16 Si 0.781 3.219 17 H -0.204 1.204 18 H -0.208 1.208 19 H -0.191 1.191 20 C -0.099 4.099 21 C -0.138 4.138 22 C -0.144 4.144 23 C -0.148 4.148 24 C -0.142 4.142 25 C -0.151 4.151 26 C 0.372 3.628 27 O -0.443 6.443 28 O -0.317 6.317 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.157 0.843 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.245 0.755 36 H 0.240 0.760 37 H 0.030 0.970 38 H 0.023 0.977 39 H 0.072 0.928 40 H 0.138 0.862 41 H 0.162 0.838 42 H 0.168 0.832 43 H 0.161 0.839 44 H 0.132 0.868 45 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 2.163 -9.513 16.780 19.410 hybrid contribution 0.541 -1.316 -1.483 2.056 sum 2.704 -10.829 15.296 18.936 Atomic orbital electron populations 1.20895 0.88616 1.04497 1.03538 1.20851 0.97906 0.89339 1.06758 1.23607 1.01237 0.92089 0.91474 1.20268 0.97671 0.88568 0.89697 1.44810 1.40437 1.18230 1.35699 1.16006 0.81839 0.80843 0.80859 1.90853 1.33147 1.71696 1.55727 1.44928 1.39299 1.19872 1.32379 1.19571 0.95744 0.79331 0.93940 0.92336 1.19135 0.96460 0.95889 0.88475 1.21406 1.28859 1.14742 0.91464 0.92764 1.25764 0.96230 0.97318 0.99450 1.70071 1.40972 1.34878 1.10733 0.85595 0.78572 0.79570 0.78162 1.20429 1.20784 1.19105 1.20502 0.95102 0.96657 0.97627 1.21051 0.93847 0.99750 0.99165 1.21429 1.00898 0.94477 0.97614 1.21455 0.93883 0.98988 1.00492 1.21385 0.95919 0.98666 0.98265 1.21183 0.99925 0.95400 0.98577 1.21098 0.85018 0.85507 0.71172 1.90915 1.16497 1.88754 1.48118 1.84565 1.44971 1.17236 1.84889 0.90623 0.89518 0.89885 0.84289 0.89715 0.90003 0.75474 0.76034 0.96991 0.97722 0.92782 0.86207 0.83770 0.83238 0.83892 0.86847 0.70627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 8.81 71.24 0.63 -1.08 16 2 C -0.15 -2.49 5.99 -18.73 -0.11 -2.60 16 3 C -0.07 -1.12 9.20 24.53 0.23 -0.90 16 4 C 0.16 3.38 5.75 85.63 0.49 3.87 16 5 N -0.73 -18.57 5.55 -482.30 -2.68 -21.25 16 6 C 0.70 24.77 8.52 179.05 1.53 26.29 16 7 O -0.63 -26.99 16.01 -4.00 -0.06 -27.05 16 8 N -0.71 -25.80 4.02 -461.40 -1.86 -27.66 16 9 C 0.22 9.29 2.12 44.25 0.09 9.38 16 10 H 0.06 2.77 7.44 -2.39 -0.02 2.75 16 11 C 0.04 1.88 4.50 29.85 0.13 2.02 16 12 C -0.53 -28.32 8.84 25.60 0.23 -28.09 16 13 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 14 C 0.01 0.60 5.46 84.66 0.46 1.06 16 15 N -0.93 -53.85 13.29 21.45 0.28 -53.57 16 16 Si 0.96 43.18 29.54 68.60 2.03 45.20 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 20 C -0.10 -3.71 4.92 -19.86 -0.10 -3.81 16 21 C -0.12 -3.98 9.33 22.27 0.21 -3.78 16 22 C -0.13 -3.48 10.05 22.27 0.22 -3.25 16 23 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 24 C -0.12 -3.58 10.05 22.27 0.22 -3.35 16 25 C -0.13 -4.71 9.67 22.27 0.22 -4.49 16 26 C 0.53 9.66 8.25 70.11 0.58 10.24 16 27 O -0.55 -13.44 17.01 19.74 0.34 -13.10 16 28 O -0.50 -6.26 12.61 -57.06 -0.72 -6.98 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.09 1.07 7.54 -2.39 -0.02 1.05 16 31 H 0.08 1.11 6.70 -2.39 -0.02 1.09 16 32 H 0.14 2.35 7.51 -2.91 -0.02 2.33 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.08 1.79 5.79 -2.39 -0.01 1.77 16 35 H 0.41 8.38 8.48 -92.71 -0.79 7.60 16 36 H 0.40 13.26 8.62 -92.71 -0.80 12.46 16 37 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 40 H 0.12 3.74 7.71 -2.91 -0.02 3.71 16 41 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 42 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 43 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 44 H 0.11 4.02 8.04 -2.91 -0.02 3.99 16 45 H 0.43 1.60 9.11 -74.05 -0.67 0.93 16 Total: -1.00 -74.81 390.56 1.37 -73.45 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: -1.21 Total: 32.56 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 5.25 Total: -1.61 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -4.25 Total: -102.47 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -0.45 Total: -47.13 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -74.81 1.37 -73.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588972038.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.509 kcal (2) G-P(sol) polarization free energy of solvation -74.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds