Wall clock time and date at job start Tue Mar 31 2020 16:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47233 * 2 1 4 4 C 1.50695 * 109.47525 * 239.99918 * 2 1 3 5 5 H 1.08008 * 120.00107 * 240.00032 * 4 2 1 6 6 C 1.37875 * 120.00287 * 59.99490 * 4 2 1 7 7 N 1.31516 * 119.99534 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00359 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47086 * 90.00327 * 8 6 4 10 10 H 1.48497 * 109.47249 * 210.00179 * 8 6 4 11 11 H 1.48497 * 109.46881 * 330.00253 * 8 6 4 12 12 C 1.53007 * 109.47059 * 119.99738 * 2 1 3 13 13 N 1.46504 * 109.47093 * 300.00086 * 12 2 1 14 14 C 1.34773 * 119.99791 * 180.02562 * 13 12 2 15 15 O 1.21588 * 120.00205 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99503 * 180.02562 * 14 13 12 17 17 C 1.46612 * 126.54883 * 359.97438 * 16 14 13 18 18 C 1.50828 * 107.72505 * 179.79154 * 17 16 14 19 19 C 1.38624 * 131.01887 * 179.56065 * 18 17 16 20 20 C 1.37831 * 120.30387 * 180.36905 * 19 18 17 21 21 C 1.39646 * 119.80935 * 0.25611 * 20 19 18 22 22 C 1.47729 * 120.17855 * 179.97438 * 21 20 19 23 23 O 1.21470 * 119.99974 * 180.02562 * 22 21 20 24 24 O 1.34714 * 119.99733 * 0.02562 * 22 21 20 25 25 C 1.39526 * 119.64431 * 359.97438 * 21 20 19 26 26 C 1.38168 * 119.98154 * 0.02562 * 25 21 20 27 27 C 1.46621 * 126.53787 * 180.02562 * 16 14 13 28 28 H 1.08995 * 109.47065 * 300.00092 * 1 2 3 29 29 H 1.09004 * 109.46979 * 60.00630 * 1 2 3 30 30 H 1.09005 * 109.46937 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47440 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46878 * 300.00042 * 3 2 1 33 33 H 1.09005 * 109.47445 * 59.99484 * 3 2 1 34 34 H 0.97002 * 119.99419 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.46841 * 180.02562 * 12 2 1 36 36 H 1.08997 * 109.47209 * 60.00589 * 12 2 1 37 37 H 0.97002 * 119.99610 * 359.97438 * 13 12 2 38 38 H 1.08999 * 109.80950 * 299.56097 * 17 16 14 39 39 H 1.08997 * 109.80622 * 60.38318 * 17 16 14 40 40 H 1.08002 * 119.84976 * 0.65196 * 19 18 17 41 41 H 1.08000 * 120.09715 * 180.27510 * 20 19 18 42 42 H 0.96701 * 116.99752 * 180.02562 * 24 22 21 43 43 H 1.07994 * 120.00593 * 179.97438 * 25 21 20 44 44 H 1.08995 * 109.81109 * 60.45014 * 27 16 14 45 45 H 1.08997 * 109.81004 * 299.54215 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 1.3430 -2.1619 -4.4118 10 1 2.4867 -0.1416 -5.1122 11 1 3.6295 -1.7584 -3.7120 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8776 -0.4907 3.6696 15 8 2.5774 -1.4787 3.7812 16 7 1.4279 0.1445 4.7700 17 6 0.5811 1.3409 4.8027 18 6 0.3300 1.6863 6.2493 19 6 -0.3935 2.7187 6.8258 20 6 -0.4726 2.8313 8.1972 21 6 0.1838 1.9037 9.0089 22 6 0.1049 2.0170 10.4797 23 8 0.6775 1.2086 11.1827 24 8 -0.6020 3.0169 11.0413 25 6 0.9145 0.8694 8.4233 26 6 0.9859 0.7676 7.0472 27 6 1.6930 -0.2287 6.1629 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 0.7095 1.1615 -3.4844 35 1 3.1300 -0.7208 1.2495 36 1 1.6767 -1.7489 1.2493 37 1 0.9942 0.7583 2.3564 38 1 1.0894 2.1669 4.3053 39 1 -0.3664 1.1366 4.3041 40 1 -0.9012 3.4356 6.1974 41 1 -1.0408 3.6344 8.6428 42 1 -0.6241 3.0500 12.0075 43 1 1.4247 0.1490 9.0454 44 1 2.7653 -0.1989 6.3557 45 1 1.3096 -1.2306 6.3563 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609672895.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:39 Heat of formation + Delta-G solvation = -83.853439 kcal Electronic energy + Delta-G solvation = -27690.699598 eV Core-core repulsion = 23673.347095 eV Total energy + Delta-G solvation = -4017.352503 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.22042 -40.35760 -39.09948 -36.75835 -36.51513 -35.94106 -33.37288 -32.07755 -31.67758 -30.60628 -28.24796 -26.66091 -25.75118 -25.45148 -24.47534 -23.58732 -22.11360 -21.21957 -20.02890 -18.86017 -18.52944 -17.88525 -17.56131 -16.49403 -16.37006 -16.01425 -15.83526 -15.25284 -15.01041 -14.80007 -14.59449 -14.36390 -13.97774 -13.61221 -13.36925 -13.20464 -13.05556 -13.00675 -12.75097 -12.47460 -12.23416 -12.04985 -11.98111 -11.41515 -11.39342 -11.21778 -11.07790 -10.88569 -10.70476 -10.41169 -10.23612 -9.94603 -9.66045 -9.51922 -9.39455 -9.35088 -8.81616 -8.66689 -8.41802 -8.20286 -6.03854 -4.13623 0.17450 0.83886 2.06044 2.45564 2.69449 3.23329 3.27673 3.34749 3.39031 3.47135 3.81161 4.04615 4.32658 4.41172 4.47438 4.59097 4.76692 4.98220 5.06646 5.18281 5.23169 5.32080 5.41104 5.42352 5.53796 5.72592 5.77178 5.87449 6.00634 6.09656 6.24928 6.30181 6.32835 6.47490 6.75183 6.79300 6.88170 7.00284 7.01847 7.22266 7.34968 7.42884 7.53356 7.68193 7.98774 8.09492 8.28320 8.37543 8.84580 8.90715 9.52185 10.97632 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033999 B = 0.002068 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.348149 B =13539.145743 C =14160.783105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.149 3.851 13 N -0.727 5.727 14 C 0.725 3.275 15 O -0.588 6.588 16 N -0.640 5.640 17 C 0.138 3.862 18 C -0.060 4.060 19 C -0.109 4.109 20 C -0.056 4.056 21 C -0.129 4.129 22 C 0.530 3.470 23 O -0.513 6.513 24 O -0.512 6.512 25 C -0.029 4.029 26 C -0.113 4.113 27 C 0.172 3.828 28 H 0.004 0.996 29 H 0.086 0.914 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.085 0.915 33 H 0.004 0.996 34 H 0.260 0.740 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.394 0.606 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.138 0.862 41 H 0.144 0.856 42 H 0.416 0.584 43 H 0.142 0.858 44 H 0.084 0.916 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.681 8.049 22.486 24.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.026 3.974 13 N -0.381 5.381 14 C 0.427 3.573 15 O -0.465 6.465 16 N -0.380 5.380 17 C 0.014 3.986 18 C -0.061 4.061 19 C -0.127 4.127 20 C -0.074 4.074 21 C -0.130 4.130 22 C 0.375 3.625 23 O -0.402 6.402 24 O -0.324 6.324 25 C -0.048 4.048 26 C -0.113 4.113 27 C 0.049 3.951 28 H 0.023 0.977 29 H 0.104 0.896 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.023 0.977 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.229 0.771 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.156 0.844 41 H 0.162 0.838 42 H 0.275 0.725 43 H 0.160 0.840 44 H 0.102 0.898 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.014 7.113 22.019 23.676 hybrid contribution -0.051 0.047 -0.160 0.175 sum -5.065 7.160 21.858 23.552 Atomic orbital electron populations 1.21824 0.97749 0.99208 0.99968 1.18374 0.92825 0.92809 0.90491 1.21822 0.98641 0.98316 0.99968 1.20970 1.31452 1.12094 0.89784 0.92362 1.24882 0.94888 0.94930 0.98869 1.69803 1.36739 1.22715 1.23221 0.86559 0.79338 0.79369 0.82537 1.20723 1.21295 1.19890 1.21665 0.98054 0.95522 0.82137 1.45520 1.55401 1.33018 1.04198 1.15330 0.80247 0.82292 0.79398 1.90918 1.42976 1.27382 1.85271 1.46969 1.55455 1.30516 1.05095 1.20357 0.96128 0.89148 0.92952 1.20674 0.95333 0.94564 0.95514 1.20519 0.99778 0.97873 0.94525 1.21363 0.95963 0.97230 0.92892 1.18818 1.05193 0.99868 0.89107 1.20790 0.74868 0.77694 0.89166 1.90910 1.43778 1.41473 1.64029 1.84543 1.68007 1.50217 1.29625 1.20466 0.95356 0.96061 0.92903 1.20292 0.99818 0.97992 0.93224 1.19918 0.99898 0.96523 0.78792 0.97660 0.89582 0.95395 0.95383 0.89585 0.97657 0.93015 0.92722 0.92721 0.77054 0.89419 0.89475 0.84384 0.83799 0.72545 0.84028 0.89820 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 4 C -0.50 -13.00 8.01 -34.44 -0.28 -13.28 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.89 -23.21 9.35 55.43 0.52 -22.69 16 8 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 12 C 0.15 3.13 4.50 -4.04 -0.02 3.12 16 13 N -0.73 -12.90 4.92 -65.22 -0.32 -13.22 16 14 C 0.73 12.96 8.51 -86.92 -0.74 12.22 16 15 O -0.59 -12.73 16.72 5.29 0.09 -12.64 16 16 N -0.64 -8.78 3.34 -181.86 -0.61 -9.39 16 17 C 0.14 1.41 6.21 -5.07 -0.03 1.38 16 18 C -0.06 -0.55 6.22 -104.42 -0.65 -1.20 16 19 C -0.11 -0.77 10.03 -39.59 -0.40 -1.17 16 20 C -0.06 -0.39 9.62 -39.20 -0.38 -0.77 16 21 C -0.13 -1.10 5.87 -105.01 -0.62 -1.72 16 22 C 0.53 4.59 8.27 34.61 0.29 4.88 16 23 O -0.51 -5.93 17.13 -19.24 -0.33 -6.26 16 24 O -0.51 -2.82 12.69 -40.53 -0.51 -3.33 16 25 C -0.03 -0.27 9.60 -39.13 -0.38 -0.65 16 26 C -0.11 -1.11 6.21 -104.59 -0.65 -1.76 16 27 C 0.17 2.02 6.90 -5.07 -0.04 1.99 16 28 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 29 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 33 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 34 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.39 6.24 5.21 -40.82 -0.21 6.03 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 41 H 0.14 0.72 7.62 -52.49 -0.40 0.32 16 42 H 0.42 0.50 9.11 45.56 0.42 0.92 16 43 H 0.14 1.24 7.65 -52.49 -0.40 0.84 16 44 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 371.47 15.07 5.60 5.60 Total: -1.00 -31.94 371.47 -9.32 -41.26 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.29 Total: 4.45 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -3.45 Total: 0.73 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -0.41 Total: -45.30 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.76 Total: -22.24 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.94 -9.32 -41.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609672895.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.593 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds