Wall clock time and date at job start Tue Mar 31 2020 16:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47233 * 2 1 4 4 C 1.50695 * 109.47525 * 239.99918 * 2 1 3 5 5 H 1.08008 * 120.00107 * 240.00032 * 4 2 1 6 6 C 1.37875 * 120.00287 * 59.99490 * 4 2 1 7 7 N 1.31516 * 119.99534 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00359 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47086 * 90.00327 * 8 6 4 10 10 H 1.48497 * 109.47249 * 210.00179 * 8 6 4 11 11 H 1.48497 * 109.46881 * 330.00253 * 8 6 4 12 12 C 1.53007 * 109.47059 * 119.99738 * 2 1 3 13 13 N 1.46504 * 109.47093 * 300.00086 * 12 2 1 14 14 C 1.34773 * 119.99791 * 180.02562 * 13 12 2 15 15 O 1.21588 * 120.00205 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99503 * 180.02562 * 14 13 12 17 17 C 1.46612 * 126.54883 * 359.97438 * 16 14 13 18 18 C 1.50828 * 107.72505 * 179.79154 * 17 16 14 19 19 C 1.38624 * 131.01887 * 179.56065 * 18 17 16 20 20 C 1.37831 * 120.30387 * 180.36905 * 19 18 17 21 21 C 1.39646 * 119.80935 * 0.25611 * 20 19 18 22 22 C 1.47729 * 120.17855 * 179.97438 * 21 20 19 23 23 O 1.21470 * 119.99974 * 180.02562 * 22 21 20 24 24 O 1.34714 * 119.99733 * 0.02562 * 22 21 20 25 25 C 1.39526 * 119.64431 * 359.97438 * 21 20 19 26 26 C 1.38168 * 119.98154 * 0.02562 * 25 21 20 27 27 C 1.46621 * 126.53787 * 180.02562 * 16 14 13 28 28 H 1.08995 * 109.47065 * 300.00092 * 1 2 3 29 29 H 1.09004 * 109.46979 * 60.00630 * 1 2 3 30 30 H 1.09005 * 109.46937 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47440 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46878 * 300.00042 * 3 2 1 33 33 H 1.09005 * 109.47445 * 59.99484 * 3 2 1 34 34 H 0.97002 * 119.99419 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.46841 * 180.02562 * 12 2 1 36 36 H 1.08997 * 109.47209 * 60.00589 * 12 2 1 37 37 H 0.97002 * 119.99610 * 359.97438 * 13 12 2 38 38 H 1.08999 * 109.80950 * 299.56097 * 17 16 14 39 39 H 1.08997 * 109.80622 * 60.38318 * 17 16 14 40 40 H 1.08002 * 119.84976 * 0.65196 * 19 18 17 41 41 H 1.08000 * 120.09715 * 180.27510 * 20 19 18 42 42 H 0.96701 * 116.99752 * 180.02562 * 24 22 21 43 43 H 1.07994 * 120.00593 * 179.97438 * 25 21 20 44 44 H 1.08995 * 109.81109 * 60.45014 * 27 16 14 45 45 H 1.08997 * 109.81004 * 299.54215 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 1.3430 -2.1619 -4.4118 10 1 2.4867 -0.1416 -5.1122 11 1 3.6295 -1.7584 -3.7120 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8776 -0.4907 3.6696 15 8 2.5774 -1.4787 3.7812 16 7 1.4279 0.1445 4.7700 17 6 0.5811 1.3409 4.8027 18 6 0.3300 1.6863 6.2493 19 6 -0.3935 2.7187 6.8258 20 6 -0.4726 2.8313 8.1972 21 6 0.1838 1.9037 9.0089 22 6 0.1049 2.0170 10.4797 23 8 0.6775 1.2086 11.1827 24 8 -0.6020 3.0169 11.0413 25 6 0.9145 0.8694 8.4233 26 6 0.9859 0.7676 7.0472 27 6 1.6930 -0.2287 6.1629 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 0.7095 1.1615 -3.4844 35 1 3.1300 -0.7208 1.2495 36 1 1.6767 -1.7489 1.2493 37 1 0.9942 0.7583 2.3564 38 1 1.0894 2.1669 4.3053 39 1 -0.3664 1.1366 4.3041 40 1 -0.9012 3.4356 6.1974 41 1 -1.0408 3.6344 8.6428 42 1 -0.6241 3.0500 12.0075 43 1 1.4247 0.1490 9.0454 44 1 2.7653 -0.1989 6.3557 45 1 1.3096 -1.2306 6.3563 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609672895.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:38 Heat of formation + Delta-G solvation = -103.543774 kcal Electronic energy + Delta-G solvation = -27691.553435 eV Core-core repulsion = 23673.347095 eV Total energy + Delta-G solvation = -4018.206340 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.04196 -41.21500 -40.20341 -38.24890 -37.19129 -37.03966 -35.04268 -33.04574 -32.73989 -31.99692 -29.05081 -27.83806 -27.53539 -27.26808 -25.92990 -24.36664 -22.84824 -21.88409 -21.35082 -20.59352 -19.43417 -18.87193 -18.23245 -17.80400 -17.41854 -17.40931 -16.68084 -16.64542 -16.22728 -15.85957 -15.69611 -15.39178 -15.05419 -14.90009 -14.61037 -14.48648 -14.05160 -14.04003 -13.98773 -13.72245 -13.36487 -13.15915 -13.07519 -12.81991 -12.67533 -12.59212 -12.58013 -12.22862 -12.12182 -12.04902 -11.75813 -11.50951 -11.46503 -11.16487 -10.68791 -10.46545 -10.36551 -10.01818 -9.96511 -9.36025 -8.00579 -6.15449 -0.47315 0.21053 1.40473 1.41784 1.43967 1.47700 1.55633 1.99475 2.06237 2.47109 2.60153 2.92784 3.23265 3.26192 3.29191 3.82914 3.99813 4.11696 4.35373 4.38233 4.39861 4.45419 4.48770 4.52027 4.55485 4.69427 4.73384 4.88228 4.94781 5.02698 5.08129 5.13067 5.14534 5.20340 5.22469 5.37571 5.39265 5.55128 5.59992 5.68762 5.70023 5.70035 5.96224 6.18082 6.23898 6.45912 6.88312 6.93008 6.93859 7.48945 7.51902 8.98341 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033999 B = 0.002068 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.348149 B =13539.145743 C =14160.783105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.052 3.948 3 C -0.119 4.119 4 C -0.526 4.526 5 H 0.044 0.956 6 C 0.028 3.972 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.280 1.280 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.166 3.834 13 N -0.718 5.718 14 C 0.725 3.275 15 O -0.632 6.632 16 N -0.637 5.637 17 C 0.132 3.868 18 C -0.063 4.063 19 C -0.099 4.099 20 C -0.043 4.043 21 C -0.139 4.139 22 C 0.536 3.464 23 O -0.550 6.550 24 O -0.500 6.500 25 C -0.036 4.036 26 C -0.123 4.123 27 C 0.169 3.831 28 H 0.037 0.963 29 H 0.063 0.937 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.260 0.740 35 H 0.037 0.963 36 H 0.038 0.962 37 H 0.406 0.594 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.170 0.830 41 H 0.171 0.829 42 H 0.435 0.565 43 H 0.137 0.863 44 H 0.078 0.922 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.264 10.277 23.567 26.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.051 3.949 3 C -0.177 4.177 4 C -0.565 4.565 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.206 1.206 10 H -0.209 1.209 11 H -0.202 1.202 12 C 0.042 3.958 13 N -0.374 5.374 14 C 0.427 3.573 15 O -0.514 6.514 16 N -0.375 5.375 17 C 0.010 3.990 18 C -0.064 4.064 19 C -0.117 4.117 20 C -0.061 4.061 21 C -0.140 4.140 22 C 0.382 3.618 23 O -0.443 6.443 24 O -0.314 6.314 25 C -0.055 4.055 26 C -0.123 4.123 27 C 0.046 3.954 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.244 0.756 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.187 0.813 41 H 0.188 0.812 42 H 0.297 0.703 43 H 0.154 0.846 44 H 0.096 0.904 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.643 9.407 23.147 25.854 hybrid contribution 0.394 -0.581 -0.385 0.801 sum -6.249 8.826 22.762 25.201 Atomic orbital electron populations 1.21660 0.96956 0.98685 1.00417 1.18371 0.93387 0.93128 0.90026 1.21659 0.97927 0.97714 1.00418 1.21247 1.31645 1.12131 0.91480 0.93753 1.25428 0.95226 0.95625 1.00868 1.69899 1.36999 1.23163 1.23569 0.85779 0.78617 0.78490 0.80018 1.20583 1.20857 1.20204 1.21209 0.96889 0.94801 0.82911 1.45171 1.55610 1.33184 1.03405 1.15350 0.79964 0.81982 0.80051 1.90884 1.44959 1.29479 1.86059 1.46833 1.54930 1.31113 1.04646 1.20595 0.96216 0.87935 0.94259 1.20688 0.95954 0.95188 0.94527 1.20835 0.98690 0.97331 0.94856 1.21672 0.94837 0.96905 0.92715 1.18952 1.05477 1.00132 0.89477 1.20798 0.74308 0.77528 0.89130 1.90902 1.45522 1.43025 1.64821 1.84492 1.66766 1.48614 1.31519 1.20458 0.95836 0.96587 0.92604 1.20036 1.00803 0.98164 0.93345 1.19953 0.99998 0.97156 0.78274 0.94402 0.91789 0.96369 0.96355 0.91793 0.94397 0.93032 0.94411 0.94388 0.75646 0.87964 0.88035 0.81280 0.81171 0.70268 0.84561 0.90440 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.13 8.08 71.98 0.58 -4.55 16 2 C 0.05 2.33 0.50 -52.93 -0.03 2.31 16 3 C -0.12 -5.13 8.08 71.98 0.58 -4.55 16 4 C -0.53 -27.45 8.01 25.60 0.21 -27.24 16 5 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 6 C 0.03 1.47 5.15 84.65 0.44 1.91 16 7 N -0.90 -46.86 9.35 21.45 0.20 -46.66 16 8 Si 0.94 42.22 29.54 68.60 2.03 44.24 16 9 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 C 0.17 7.03 4.50 86.38 0.39 7.42 16 13 N -0.72 -24.78 4.92 -478.52 -2.36 -27.13 16 14 C 0.72 25.71 8.51 179.05 1.52 27.24 16 15 O -0.63 -28.03 16.72 -3.99 -0.07 -28.10 16 16 N -0.64 -16.89 3.34 -847.53 -2.83 -19.71 16 17 C 0.13 2.35 6.21 85.65 0.53 2.88 16 18 C -0.06 -0.98 6.22 -19.73 -0.12 -1.10 16 19 C -0.10 -1.01 10.03 22.27 0.22 -0.78 16 20 C -0.04 -0.44 9.62 22.51 0.22 -0.23 16 21 C -0.14 -2.10 5.87 -20.12 -0.12 -2.22 16 22 C 0.54 8.36 8.27 70.33 0.58 8.94 16 23 O -0.55 -12.44 17.13 19.93 0.34 -12.10 16 24 O -0.50 -4.06 12.69 -56.24 -0.71 -4.77 16 25 C -0.04 -0.64 9.60 22.56 0.22 -0.42 16 26 C -0.12 -2.30 6.21 -19.84 -0.12 -2.42 16 27 C 0.17 3.99 6.90 85.65 0.59 4.58 16 28 H 0.04 1.33 6.86 -2.39 -0.02 1.32 16 29 H 0.06 3.06 6.07 -2.38 -0.01 3.05 16 30 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 3.06 6.07 -2.39 -0.01 3.05 16 33 H 0.04 1.33 6.86 -2.38 -0.02 1.32 16 34 H 0.26 13.10 8.31 -92.71 -0.77 12.33 16 35 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.41 11.86 5.21 -92.71 -0.48 11.37 16 38 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.17 0.70 8.06 -2.91 -0.02 0.67 16 41 H 0.17 0.86 7.62 -2.91 -0.02 0.84 16 42 H 0.43 -0.12 9.11 -74.06 -0.67 -0.80 16 43 H 0.14 2.46 7.65 -2.91 -0.02 2.44 16 44 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -70.10 371.47 2.18 -67.92 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -0.12 Total: 14.56 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 5.69 Total: 11.76 kcal Atomic # 7 Polarization: -88.53 SS G_CDS: -4.98 Total: -93.51 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -0.44 Total: -44.98 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Total: -70.10 2.18 -67.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609672895.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.623 kcal (2) G-P(sol) polarization free energy of solvation -70.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds