Wall clock time and date at job start Tue Mar 31 2020 17:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47237 * 2 1 4 4 H 1.09000 * 109.46888 * 55.00261 * 3 2 1 5 5 C 1.50695 * 109.47433 * 175.00168 * 3 2 1 6 6 O 1.21288 * 120.00241 * 120.00068 * 5 3 2 7 7 N 1.34780 * 120.00083 * 299.99982 * 5 3 2 8 8 C 1.39999 * 120.00197 * 175.47905 * 7 5 3 9 9 C 1.38917 * 119.99823 * 214.84981 * 8 7 5 10 10 C 1.38011 * 119.99343 * 179.78841 * 9 8 7 11 11 C 1.38911 * 120.00134 * 0.47035 * 10 9 8 12 12 O 1.35774 * 119.99869 * 179.76411 * 11 10 9 13 13 C 1.34815 * 116.99874 * 185.36465 * 12 11 10 14 14 H 1.08001 * 120.00039 * 354.96681 * 13 12 11 15 15 C 1.38631 * 119.99799 * 174.96056 * 13 12 11 16 16 N 1.31570 * 120.00089 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99695 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47087 * 60.00544 * 17 15 13 19 19 H 1.48507 * 109.46983 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47338 * 299.99970 * 17 15 13 21 21 C 1.38914 * 120.00236 * 359.78197 * 11 10 9 22 22 C 1.38004 * 120.00030 * 359.97438 * 21 11 10 23 23 N 1.46497 * 109.47323 * 295.00280 * 3 2 1 24 24 C 1.46772 * 124.35223 * 119.99843 * 23 3 2 25 25 C 1.54481 * 105.47413 * 197.02006 * 24 23 3 26 26 C 1.54634 * 101.76477 * 334.58464 * 25 24 23 27 27 C 1.34418 * 124.34977 * 299.70406 * 23 3 2 28 28 O 1.21281 * 124.94008 * 359.55851 * 27 23 3 29 29 H 1.08998 * 109.47629 * 60.00109 * 1 2 3 30 30 H 1.09001 * 109.47060 * 299.99631 * 1 2 3 31 31 H 1.09000 * 109.47162 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47174 * 120.00171 * 2 1 3 33 33 H 1.09001 * 109.47060 * 240.00369 * 2 1 3 34 34 H 0.97001 * 120.00132 * 355.48337 * 7 5 3 35 35 H 1.07996 * 120.00433 * 0.03228 * 9 8 7 36 36 H 1.07993 * 119.99860 * 180.22927 * 10 9 8 37 37 H 0.96998 * 120.00124 * 179.97438 * 16 15 13 38 38 H 1.07993 * 120.00146 * 179.97438 * 21 11 10 39 39 H 1.07999 * 119.99759 * 179.97438 * 22 21 11 40 40 H 1.09001 * 110.24170 * 316.01981 * 24 23 3 41 41 H 1.08999 * 110.24238 * 78.01552 * 24 23 3 42 42 H 1.08996 * 110.96924 * 92.69828 * 25 24 23 43 43 H 1.09000 * 110.96833 * 216.46869 * 25 24 23 44 44 H 1.08993 * 110.49101 * 143.47753 * 26 25 24 45 45 H 1.09007 * 110.48283 * 265.98847 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 0.8419 5 6 3.5418 1.4443 0.1238 6 8 4.2216 1.9436 -0.7478 7 7 4.1298 0.8911 1.2031 8 6 5.5254 0.8078 1.2743 9 6 6.1256 -0.2837 1.8894 10 6 7.5015 -0.3678 1.9557 11 6 8.2861 0.6436 1.4160 12 8 9.6397 0.5630 1.4855 13 6 10.3396 1.6271 1.0435 14 1 9.8259 2.4575 0.5820 15 6 11.7187 1.6554 1.1815 16 7 12.3446 0.6437 1.7434 17 14 12.6884 3.1302 0.5697 18 1 12.2317 4.3520 1.2795 19 1 14.1342 2.9156 0.8327 20 1 12.4705 3.2950 -0.8900 21 6 7.6858 1.7375 0.8056 22 6 6.3100 1.8193 0.7348 23 7 1.6524 2.0975 -1.2517 24 6 0.8075 3.2949 -1.3328 25 6 0.3192 3.3564 -2.7971 26 6 1.4365 2.5827 -3.5348 27 6 2.0295 1.6824 -2.4733 28 8 2.7398 0.7241 -2.6928 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.5859 0.5506 1.9305 35 1 5.5156 -1.0682 2.3122 36 1 7.9682 -1.2181 2.4305 37 1 13.3096 0.6633 1.8396 38 1 8.2958 2.5240 0.3864 39 1 5.8434 2.6701 0.2606 40 1 -0.0417 3.2038 -0.6555 41 1 1.3897 4.1842 -1.0915 42 1 -0.6419 2.8548 -2.9092 43 1 0.2627 4.3874 -3.1465 44 1 1.0177 1.9920 -4.3494 45 1 2.1916 3.2717 -3.9135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647091664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:25 Heat of formation + Delta-G solvation = -60.706736 kcal Electronic energy + Delta-G solvation = -28381.925971 eV Core-core repulsion = 24365.577185 eV Total energy + Delta-G solvation = -4016.348786 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.05274 -39.68388 -38.52908 -36.58236 -36.35549 -35.12522 -33.84181 -32.13934 -31.30217 -30.16503 -28.62046 -27.77950 -26.80068 -25.18607 -22.75249 -22.33004 -22.17908 -21.73831 -20.36632 -19.15088 -18.10625 -17.67524 -17.27544 -16.88137 -16.19926 -16.08924 -15.65200 -14.82403 -14.56507 -14.50210 -14.38999 -14.08596 -13.79634 -13.61334 -13.53880 -13.46892 -13.22916 -12.94480 -12.85787 -12.78522 -12.55184 -12.17714 -11.88588 -11.72585 -11.60781 -11.49753 -11.42226 -11.38267 -11.21875 -10.96897 -10.72277 -10.42188 -9.80081 -9.69094 -9.63353 -9.17396 -8.79993 -8.65644 -8.15871 -6.89542 -6.40720 -3.98306 2.12622 2.25915 2.50222 2.68397 2.85430 3.17230 3.18485 3.20748 3.41382 4.01236 4.11937 4.16891 4.46841 4.51487 4.58028 4.63604 4.67453 4.82153 4.92471 5.09689 5.12939 5.15760 5.25937 5.29917 5.36874 5.37192 5.51985 5.59099 5.65329 5.71426 5.76274 5.79410 5.92637 6.17210 6.21364 6.28550 6.39091 6.76940 6.89424 6.98032 7.04941 7.13706 7.34192 7.48008 7.71346 7.82594 8.04500 8.15923 8.41511 9.05000 9.74797 10.77274 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018801 B = 0.002601 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.900944 B =10762.381016 C =11740.989893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.147 3.853 4 H 0.112 0.888 5 C 0.494 3.506 6 O -0.504 6.504 7 N -0.659 5.659 8 C 0.037 3.963 9 C -0.093 4.093 10 C -0.178 4.178 11 C 0.147 3.853 12 O -0.177 6.177 13 C -0.390 4.390 14 H 0.091 0.909 15 C 0.039 3.961 16 N -0.864 5.864 17 Si 0.940 3.060 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 C -0.220 4.220 22 C -0.063 4.063 23 N -0.608 5.608 24 C 0.104 3.896 25 C -0.129 4.129 26 C -0.155 4.155 27 C 0.525 3.475 28 O -0.511 6.511 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.400 0.600 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.270 0.730 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.401 4.715 -2.787 28.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.040 3.960 4 H 0.130 0.870 5 C 0.279 3.721 6 O -0.377 6.377 7 N -0.305 5.305 8 C -0.055 4.055 9 C -0.113 4.113 10 C -0.198 4.198 11 C 0.093 3.907 12 O -0.080 6.080 13 C -0.467 4.467 14 H 0.109 0.891 15 C -0.165 4.165 16 N -0.499 5.499 17 Si 0.765 3.235 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.195 1.195 21 C -0.240 4.240 22 C -0.083 4.083 23 N -0.343 5.343 24 C -0.018 4.018 25 C -0.167 4.167 26 C -0.195 4.195 27 C 0.312 3.688 28 O -0.385 6.385 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.234 0.766 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.080 0.920 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.118 0.882 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -27.123 4.286 -3.383 27.667 hybrid contribution 0.240 0.690 0.116 0.740 sum -26.883 4.977 -3.267 27.534 Atomic orbital electron populations 1.21706 0.94628 1.02077 1.01794 1.21901 0.96951 0.94159 1.04521 1.20809 0.92038 0.95650 0.87542 0.87044 1.20831 0.90284 0.79199 0.81820 1.90725 1.64432 1.43129 1.39453 1.43131 1.05824 1.61228 1.20315 1.17234 0.81150 0.97520 1.09628 1.20349 0.93969 0.95654 1.01308 1.19988 0.91928 1.00459 1.07404 1.19404 0.85170 0.93262 0.92894 1.83971 1.11644 1.39984 1.72432 1.21285 0.89247 0.96886 1.39258 0.89128 1.25272 0.95795 0.98653 0.96769 1.70035 1.09548 1.29913 1.40399 0.85789 0.78413 0.79974 0.79319 1.19506 1.20286 1.19475 1.21096 0.94302 1.01209 1.07413 1.20810 0.92853 0.97040 0.97634 1.47902 1.51787 1.29395 1.05207 1.22096 0.94089 0.87694 0.97970 1.22564 0.98429 1.01912 0.93821 1.22320 0.99441 0.99619 0.98150 1.20725 0.79450 0.84612 0.83977 1.90749 1.35896 1.28347 1.83463 0.92588 0.92616 0.92228 0.90245 0.89586 0.76580 0.86749 0.86057 0.92010 0.85285 0.85963 0.90354 0.91067 0.90020 0.89168 0.88236 0.87783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.80 37.16 0.36 -0.58 16 2 C -0.14 -1.25 5.31 -26.74 -0.14 -1.40 16 3 C 0.15 1.49 2.67 -69.09 -0.18 1.31 16 4 H 0.11 0.75 8.07 -51.93 -0.42 0.33 16 5 C 0.49 7.44 6.69 -10.99 -0.07 7.37 16 6 O -0.50 -10.00 12.27 -10.09 -0.12 -10.13 16 7 N -0.66 -9.34 5.15 -9.82 -0.05 -9.39 16 8 C 0.04 0.69 6.30 -83.62 -0.53 0.16 16 9 C -0.09 -1.69 9.96 -39.41 -0.39 -2.08 16 10 C -0.18 -3.85 9.99 -39.42 -0.39 -4.24 16 11 C 0.15 3.69 6.65 -39.08 -0.26 3.43 16 12 O -0.18 -5.19 9.75 0.02 0.00 -5.19 16 13 C -0.39 -11.27 9.48 30.88 0.29 -10.98 16 14 H 0.09 2.45 5.20 -52.49 -0.27 2.17 16 15 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 16 N -0.86 -25.83 13.67 55.48 0.76 -25.07 16 17 Si 0.94 21.15 29.55 -169.99 -5.02 16.12 16 18 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 C -0.22 -5.20 9.16 -39.42 -0.36 -5.56 16 22 C -0.06 -1.35 8.69 -39.42 -0.34 -1.69 16 23 N -0.61 -6.27 2.08 -166.16 -0.35 -6.62 16 24 C 0.10 0.64 7.30 -3.12 -0.02 0.62 16 25 C -0.13 -0.63 7.18 -25.09 -0.18 -0.81 16 26 C -0.16 -1.31 6.86 -26.74 -0.18 -1.49 16 27 C 0.52 6.92 6.69 -10.86 -0.07 6.84 16 28 O -0.51 -9.35 15.33 -10.08 -0.15 -9.50 16 29 H 0.06 0.39 7.75 -51.93 -0.40 -0.01 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.60 7.53 -51.93 -0.39 0.21 16 33 H 0.09 1.10 6.67 -51.93 -0.35 0.75 16 34 H 0.40 3.96 8.33 -40.82 -0.34 3.62 16 35 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 36 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.13 3.06 5.63 -52.49 -0.30 2.77 16 39 H 0.12 2.58 6.22 -52.49 -0.33 2.26 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 372.31 15.07 5.61 5.61 Total: -1.00 -38.18 372.31 -8.06 -46.24 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.16 Total: 6.01 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -2.57 Total: -8.08 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.36 Total: -41.08 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.28 Total: -24.82 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -38.18 -8.06 -46.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647091664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.464 kcal (2) G-P(sol) polarization free energy of solvation -38.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds