Wall clock time and date at job start Tue Mar 31 2020 17:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47237 * 2 1 4 4 H 1.09000 * 109.46888 * 55.00261 * 3 2 1 5 5 C 1.50695 * 109.47433 * 175.00168 * 3 2 1 6 6 O 1.21288 * 120.00241 * 120.00068 * 5 3 2 7 7 N 1.34780 * 120.00083 * 299.99982 * 5 3 2 8 8 C 1.39999 * 120.00197 * 175.47905 * 7 5 3 9 9 C 1.38917 * 119.99823 * 214.84981 * 8 7 5 10 10 C 1.38011 * 119.99343 * 179.78841 * 9 8 7 11 11 C 1.38911 * 120.00134 * 0.47035 * 10 9 8 12 12 O 1.35774 * 119.99869 * 179.76411 * 11 10 9 13 13 C 1.34815 * 116.99874 * 185.36465 * 12 11 10 14 14 H 1.08001 * 120.00039 * 354.96681 * 13 12 11 15 15 C 1.38631 * 119.99799 * 174.96056 * 13 12 11 16 16 N 1.31570 * 120.00089 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99695 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47087 * 60.00544 * 17 15 13 19 19 H 1.48507 * 109.46983 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47338 * 299.99970 * 17 15 13 21 21 C 1.38914 * 120.00236 * 359.78197 * 11 10 9 22 22 C 1.38004 * 120.00030 * 359.97438 * 21 11 10 23 23 N 1.46497 * 109.47323 * 295.00280 * 3 2 1 24 24 C 1.46772 * 124.35223 * 119.99843 * 23 3 2 25 25 C 1.54481 * 105.47413 * 197.02006 * 24 23 3 26 26 C 1.54634 * 101.76477 * 334.58464 * 25 24 23 27 27 C 1.34418 * 124.34977 * 299.70406 * 23 3 2 28 28 O 1.21281 * 124.94008 * 359.55851 * 27 23 3 29 29 H 1.08998 * 109.47629 * 60.00109 * 1 2 3 30 30 H 1.09001 * 109.47060 * 299.99631 * 1 2 3 31 31 H 1.09000 * 109.47162 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47174 * 120.00171 * 2 1 3 33 33 H 1.09001 * 109.47060 * 240.00369 * 2 1 3 34 34 H 0.97001 * 120.00132 * 355.48337 * 7 5 3 35 35 H 1.07996 * 120.00433 * 0.03228 * 9 8 7 36 36 H 1.07993 * 119.99860 * 180.22927 * 10 9 8 37 37 H 0.96998 * 120.00124 * 179.97438 * 16 15 13 38 38 H 1.07993 * 120.00146 * 179.97438 * 21 11 10 39 39 H 1.07999 * 119.99759 * 179.97438 * 22 21 11 40 40 H 1.09001 * 110.24170 * 316.01981 * 24 23 3 41 41 H 1.08999 * 110.24238 * 78.01552 * 24 23 3 42 42 H 1.08996 * 110.96924 * 92.69828 * 25 24 23 43 43 H 1.09000 * 110.96833 * 216.46869 * 25 24 23 44 44 H 1.08993 * 110.49101 * 143.47753 * 26 25 24 45 45 H 1.09007 * 110.48283 * 265.98847 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 0.8419 5 6 3.5418 1.4443 0.1238 6 8 4.2216 1.9436 -0.7478 7 7 4.1298 0.8911 1.2031 8 6 5.5254 0.8078 1.2743 9 6 6.1256 -0.2837 1.8894 10 6 7.5015 -0.3678 1.9557 11 6 8.2861 0.6436 1.4160 12 8 9.6397 0.5630 1.4855 13 6 10.3396 1.6271 1.0435 14 1 9.8259 2.4575 0.5820 15 6 11.7187 1.6554 1.1815 16 7 12.3446 0.6437 1.7434 17 14 12.6884 3.1302 0.5697 18 1 12.2317 4.3520 1.2795 19 1 14.1342 2.9156 0.8327 20 1 12.4705 3.2950 -0.8900 21 6 7.6858 1.7375 0.8056 22 6 6.3100 1.8193 0.7348 23 7 1.6524 2.0975 -1.2517 24 6 0.8075 3.2949 -1.3328 25 6 0.3192 3.3564 -2.7971 26 6 1.4365 2.5827 -3.5348 27 6 2.0295 1.6824 -2.4733 28 8 2.7398 0.7241 -2.6928 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.5859 0.5506 1.9305 35 1 5.5156 -1.0682 2.3122 36 1 7.9682 -1.2181 2.4305 37 1 13.3096 0.6633 1.8396 38 1 8.2958 2.5240 0.3864 39 1 5.8434 2.6701 0.2606 40 1 -0.0417 3.2038 -0.6555 41 1 1.3897 4.1842 -1.0915 42 1 -0.6419 2.8548 -2.9092 43 1 0.2627 4.3874 -3.1465 44 1 1.0177 1.9920 -4.3494 45 1 2.1916 3.2717 -3.9135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647091664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:24 Heat of formation + Delta-G solvation = -87.091723 kcal Electronic energy + Delta-G solvation = -28383.070110 eV Core-core repulsion = 24365.577185 eV Total energy + Delta-G solvation = -4017.492925 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.06157 -41.05438 -40.15726 -38.18714 -37.40862 -35.98398 -35.27300 -34.17512 -31.96116 -31.88368 -30.03730 -28.44481 -27.97982 -27.12460 -24.12134 -23.47054 -23.14542 -22.70171 -21.75182 -20.32525 -19.81380 -19.19530 -18.39467 -18.26915 -17.38723 -17.07839 -16.60412 -16.36307 -16.19865 -15.69761 -15.51313 -15.46243 -15.23573 -15.21042 -14.68862 -14.56435 -14.32200 -14.18063 -13.80568 -13.74823 -13.58269 -13.37562 -13.30809 -13.21553 -12.90794 -12.72197 -12.48778 -12.39417 -12.16845 -12.13827 -11.99154 -11.78724 -11.45140 -11.16602 -10.87115 -10.66576 -10.54744 -9.88924 -9.67884 -8.65285 -8.49627 -6.16880 0.47050 0.52141 1.32031 1.41386 1.48160 1.50309 1.63444 1.89651 2.15760 2.29662 2.78721 3.11341 3.42201 3.47809 3.61153 3.70070 3.83391 3.95811 4.05767 4.07432 4.07742 4.24090 4.37224 4.43639 4.49317 4.61544 4.68666 4.70391 4.72632 4.79676 4.87775 5.03747 5.06693 5.08431 5.10929 5.18283 5.24853 5.30651 5.37804 5.40026 5.55161 5.59274 5.65967 5.98942 6.12933 6.17052 6.49925 6.94488 7.17861 7.28873 7.73375 8.72962 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018801 B = 0.002601 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.900944 B =10762.381016 C =11740.989893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C 0.150 3.850 4 H 0.161 0.839 5 C 0.488 3.512 6 O -0.556 6.556 7 N -0.646 5.646 8 C 0.063 3.937 9 C -0.078 4.078 10 C -0.180 4.180 11 C 0.107 3.893 12 O -0.226 6.226 13 C -0.417 4.417 14 H 0.095 0.905 15 C -0.019 4.019 16 N -0.917 5.917 17 Si 1.016 2.984 18 H -0.257 1.257 19 H -0.266 1.266 20 H -0.262 1.262 21 C -0.231 4.231 22 C -0.077 4.077 23 N -0.606 5.606 24 C 0.096 3.904 25 C -0.114 4.114 26 C -0.156 4.156 27 C 0.506 3.494 28 O -0.578 6.578 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.042 0.958 34 H 0.426 0.574 35 H 0.168 0.832 36 H 0.130 0.870 37 H 0.274 0.726 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.115 0.885 41 H 0.071 0.929 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.106 0.894 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.983 5.980 -1.832 33.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 C 0.043 3.957 4 H 0.178 0.822 5 C 0.275 3.725 6 O -0.433 6.433 7 N -0.294 5.294 8 C -0.031 4.031 9 C -0.098 4.098 10 C -0.200 4.200 11 C 0.056 3.944 12 O -0.133 6.133 13 C -0.493 4.493 14 H 0.112 0.888 15 C -0.217 4.217 16 N -0.555 5.555 17 Si 0.835 3.165 18 H -0.181 1.181 19 H -0.191 1.191 20 H -0.187 1.187 21 C -0.251 4.251 22 C -0.097 4.097 23 N -0.339 5.339 24 C -0.025 4.025 25 C -0.152 4.152 26 C -0.196 4.196 27 C 0.295 3.705 28 O -0.457 6.457 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.061 0.939 34 H 0.266 0.734 35 H 0.186 0.814 36 H 0.148 0.852 37 H 0.083 0.917 38 H 0.133 0.867 39 H 0.139 0.861 40 H 0.133 0.867 41 H 0.089 0.911 42 H 0.120 0.880 43 H 0.131 0.869 44 H 0.124 0.876 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -31.840 5.575 -2.383 32.412 hybrid contribution 1.283 0.241 -0.185 1.319 sum -30.556 5.816 -2.568 31.211 Atomic orbital electron populations 1.21666 0.92114 1.02695 1.02972 1.21888 0.99009 0.92909 1.03325 1.21041 0.88126 0.97315 0.89232 0.82167 1.21925 0.92523 0.77374 0.80708 1.90718 1.66113 1.45223 1.41208 1.43078 1.03937 1.60993 1.21402 1.17410 0.83449 0.96001 1.06236 1.20803 0.92863 0.96309 0.99783 1.20344 0.93314 0.99701 1.06626 1.19926 0.84462 0.95163 0.94847 1.83932 1.13527 1.40893 1.74928 1.21725 0.90133 0.97398 1.40042 0.88756 1.26541 0.96443 1.02034 0.96701 1.70166 1.10025 1.32526 1.42807 0.84689 0.76881 0.75938 0.78951 1.18090 1.19051 1.18660 1.21088 0.95407 1.00792 1.07777 1.20880 0.92064 0.98245 0.98492 1.48142 1.51230 1.30095 1.04439 1.22467 0.94545 0.85798 0.99681 1.22616 0.97584 1.02807 0.92162 1.22375 1.00520 0.99175 0.97537 1.21605 0.78691 0.84205 0.85983 1.90699 1.38956 1.31327 1.84733 0.93014 0.89703 0.92028 0.88370 0.93914 0.73427 0.81438 0.85196 0.91685 0.86735 0.86073 0.86681 0.91054 0.88011 0.86900 0.87567 0.88352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.80 71.98 0.71 -0.52 16 2 C -0.13 -2.04 5.31 30.59 0.16 -1.88 16 3 C 0.15 2.55 2.67 44.24 0.12 2.67 16 4 H 0.16 1.20 8.07 -2.39 -0.02 1.18 16 5 C 0.49 13.78 6.69 87.65 0.59 14.37 16 6 O -0.56 -22.16 12.27 11.90 0.15 -22.02 16 7 N -0.65 -16.33 5.15 -303.38 -1.56 -17.90 16 8 C 0.06 2.23 6.30 38.16 0.24 2.47 16 9 C -0.08 -2.64 9.96 22.38 0.22 -2.42 16 10 C -0.18 -7.81 9.99 22.38 0.22 -7.59 16 11 C 0.11 5.64 6.65 22.59 0.15 5.79 16 12 O -0.23 -14.18 9.75 -22.86 -0.22 -14.40 16 13 C -0.42 -25.56 9.48 67.91 0.64 -24.92 16 14 H 0.10 5.45 5.20 -2.91 -0.02 5.43 16 15 C -0.02 -1.14 5.49 84.83 0.47 -0.68 16 16 N -0.92 -57.61 13.67 21.61 0.30 -57.32 16 17 Si 1.02 44.83 29.55 68.60 2.03 46.85 16 18 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 20 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 21 C -0.23 -11.46 9.16 22.38 0.20 -11.26 16 22 C -0.08 -3.30 8.69 22.38 0.19 -3.11 16 23 N -0.61 -11.04 2.08 -798.20 -1.66 -12.70 16 24 C 0.10 0.79 7.30 86.83 0.63 1.43 16 25 C -0.11 -0.69 7.18 31.65 0.23 -0.46 16 26 C -0.16 -2.45 6.86 30.59 0.21 -2.24 16 27 C 0.51 13.21 6.69 87.90 0.59 13.80 16 28 O -0.58 -22.15 15.33 11.92 0.18 -21.97 16 29 H 0.05 0.52 7.75 -2.39 -0.02 0.50 16 30 H 0.08 0.30 8.14 -2.39 -0.02 0.29 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.10 1.09 7.53 -2.39 -0.02 1.07 16 33 H 0.04 1.06 6.67 -2.39 -0.02 1.05 16 34 H 0.43 6.36 8.33 -92.71 -0.77 5.58 16 35 H 0.17 3.95 8.06 -2.91 -0.02 3.93 16 36 H 0.13 5.34 8.06 -2.91 -0.02 5.31 16 37 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 38 H 0.11 5.87 5.63 -2.91 -0.02 5.85 16 39 H 0.12 5.25 6.22 -2.91 -0.02 5.23 16 40 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 44 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -94.48 372.31 5.04 -89.45 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.25 Total: 24.55 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: 5.58 Total: -14.55 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -2.93 Total: -87.92 kcal Atomic # 8 Polarization: -58.49 SS G_CDS: 0.11 Total: -58.38 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -94.48 5.04 -89.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647091664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.357 kcal (2) G-P(sol) polarization free energy of solvation -94.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds