Wall clock time and date at job start Tue Mar 31 2020 17:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47239 * 2 1 4 4 H 1.08998 * 109.47027 * 304.99935 * 3 2 1 5 5 C 1.50691 * 109.47159 * 184.99867 * 3 2 1 6 6 O 1.21297 * 120.00143 * 239.99871 * 5 3 2 7 7 N 1.34778 * 119.99965 * 60.00169 * 5 3 2 8 8 C 1.39996 * 119.99765 * 174.80086 * 7 5 3 9 9 C 1.38926 * 120.00172 * 326.12875 * 8 7 5 10 10 C 1.38008 * 119.99443 * 179.76513 * 9 8 7 11 11 C 1.38907 * 120.00243 * 0.49128 * 10 9 8 12 12 O 1.35779 * 119.99682 * 179.74553 * 11 10 9 13 13 C 1.34816 * 116.99821 * 185.93790 * 12 11 10 14 14 H 1.07996 * 119.99930 * 5.40689 * 13 12 11 15 15 C 1.38627 * 119.99696 * 185.40535 * 13 12 11 16 16 N 1.31572 * 120.00122 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99903 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46726 * 60.00085 * 17 15 13 19 19 H 1.48497 * 109.47003 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47204 * 300.00059 * 17 15 13 21 21 C 1.38903 * 120.00178 * 359.76467 * 11 10 9 22 22 C 1.38004 * 120.00534 * 359.97438 * 21 11 10 23 23 N 1.46507 * 109.46967 * 64.99547 * 3 2 1 24 24 C 1.46761 * 124.34989 * 239.99872 * 23 3 2 25 25 C 1.54477 * 105.46955 * 162.96501 * 24 23 3 26 26 C 1.54631 * 101.76898 * 25.41751 * 25 24 23 27 27 C 1.34415 * 124.34526 * 59.98017 * 23 3 2 28 28 O 1.21285 * 124.94680 * 0.38820 * 27 23 3 29 29 H 1.08998 * 109.47184 * 300.00099 * 1 2 3 30 30 H 1.09005 * 109.47327 * 60.00191 * 1 2 3 31 31 H 1.09006 * 109.47217 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47184 * 239.99901 * 2 1 3 33 33 H 1.08997 * 109.46760 * 120.00080 * 2 1 3 34 34 H 0.96995 * 120.00461 * 354.80041 * 7 5 3 35 35 H 1.08001 * 120.00115 * 0.02562 * 9 8 7 36 36 H 1.07995 * 119.99628 * 180.21166 * 10 9 8 37 37 H 0.97004 * 119.99733 * 180.02562 * 16 15 13 38 38 H 1.08003 * 119.99834 * 179.97438 * 21 11 10 39 39 H 1.08005 * 119.99879 * 179.97438 * 22 21 11 40 40 H 1.09001 * 110.24592 * 43.96767 * 24 23 3 41 41 H 1.08996 * 110.24707 * 281.96331 * 24 23 3 42 42 H 1.09002 * 110.96845 * 143.53448 * 25 24 23 43 43 H 1.09001 * 110.97113 * 267.29964 * 25 24 23 44 44 H 1.08996 * 110.48789 * 93.87595 * 26 25 24 45 45 H 1.08998 * 110.48832 * 216.52461 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 8 4.2217 1.9436 0.7479 7 7 4.1297 0.8911 -1.2031 8 6 5.5161 0.9883 -1.3719 9 6 6.1906 2.1232 -0.9396 10 6 7.5579 2.2168 -1.1016 11 6 8.2583 1.1807 -1.7061 12 8 9.6028 1.2751 -1.8702 13 6 10.2041 0.2937 -2.5722 14 1 9.6095 -0.4717 -3.0485 15 6 11.5857 0.2672 -2.6826 16 7 12.3102 1.1994 -2.1019 17 14 12.4190 -1.0930 -3.6548 18 1 11.9472 -1.0557 -5.0623 19 1 13.8904 -0.8955 -3.6210 20 1 12.0818 -2.4086 -3.0543 21 6 7.5831 0.0482 -2.1432 22 6 6.2165 -0.0479 -1.9764 23 7 1.6523 2.0975 1.2518 24 6 0.8075 3.2948 1.3328 25 6 0.3189 3.3560 2.7970 26 6 1.4359 2.5822 3.5349 27 6 2.0245 1.6788 2.4737 28 8 2.7290 0.7163 2.6936 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.5923 0.4256 -1.8629 35 1 5.6455 2.9304 -0.4729 36 1 8.0828 3.0976 -0.7625 37 1 13.2769 1.1810 -2.1795 38 1 8.1276 -0.7572 -2.6136 39 1 5.6916 -0.9284 -2.3166 40 1 -0.0415 3.2039 0.6553 41 1 1.3897 4.1843 1.0920 42 1 0.2623 4.3869 3.1466 43 1 -0.6424 2.8544 2.9088 44 1 2.1921 3.2708 3.9118 45 1 1.0167 1.9913 4.3493 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647091670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:30 Heat of formation + Delta-G solvation = -61.936955 kcal Electronic energy + Delta-G solvation = -28276.073467 eV Core-core repulsion = 24259.671334 eV Total energy + Delta-G solvation = -4016.402132 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.06124 -39.69096 -38.54637 -36.59058 -36.36070 -35.13424 -33.85295 -32.15387 -31.30828 -30.19472 -28.61331 -27.78303 -26.78745 -25.25773 -22.73533 -22.26450 -22.18732 -21.82163 -20.41162 -19.14289 -18.04251 -17.65784 -17.32117 -16.90091 -16.36084 -15.99840 -15.62238 -14.84483 -14.56057 -14.54302 -14.39522 -14.18435 -13.85004 -13.56485 -13.54721 -13.40652 -13.22715 -13.02583 -12.81714 -12.77016 -12.49297 -12.15386 -11.88546 -11.80310 -11.64734 -11.53847 -11.43495 -11.41381 -11.22867 -11.01927 -10.67024 -10.43923 -9.83522 -9.70916 -9.62319 -9.24326 -8.81901 -8.68046 -8.17955 -6.89403 -6.41881 -3.99968 2.11177 2.22366 2.50134 2.67564 2.86845 3.14799 3.16484 3.18870 3.39358 3.99141 4.11313 4.16552 4.46609 4.50363 4.57380 4.63681 4.65464 4.81859 4.91253 5.09316 5.12654 5.14659 5.25244 5.33843 5.36207 5.36783 5.51379 5.57441 5.58544 5.65047 5.75427 5.79844 5.90871 6.16207 6.22963 6.25977 6.33514 6.81379 6.87127 6.97449 7.01282 7.17612 7.24168 7.43153 7.71684 7.80874 8.02374 8.14695 8.40395 9.03284 9.74141 10.76134 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025535 B = 0.002347 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.280177 B =11926.056539 C =12439.483258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.138 4.138 3 C 0.147 3.853 4 H 0.113 0.887 5 C 0.494 3.506 6 O -0.504 6.504 7 N -0.660 5.660 8 C 0.040 3.960 9 C -0.067 4.067 10 C -0.177 4.177 11 C 0.147 3.853 12 O -0.177 6.177 13 C -0.391 4.391 14 H 0.091 0.909 15 C 0.039 3.961 16 N -0.862 5.862 17 Si 0.941 3.059 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 C -0.218 4.218 22 C -0.090 4.090 23 N -0.607 5.607 24 C 0.104 3.896 25 C -0.130 4.130 26 C -0.155 4.155 27 C 0.525 3.475 28 O -0.512 6.512 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.400 0.600 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.270 0.730 38 H 0.131 0.869 39 H 0.110 0.890 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.104 0.896 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.330 2.351 3.260 28.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C 0.039 3.961 4 H 0.131 0.869 5 C 0.279 3.721 6 O -0.377 6.377 7 N -0.306 5.306 8 C -0.052 4.052 9 C -0.087 4.087 10 C -0.197 4.197 11 C 0.093 3.907 12 O -0.080 6.080 13 C -0.468 4.468 14 H 0.108 0.892 15 C -0.166 4.166 16 N -0.497 5.497 17 Si 0.765 3.235 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.195 1.195 21 C -0.238 4.238 22 C -0.111 4.111 23 N -0.343 5.343 24 C -0.019 4.019 25 C -0.167 4.167 26 C -0.195 4.195 27 C 0.313 3.687 28 O -0.386 6.386 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.234 0.766 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.080 0.920 38 H 0.149 0.851 39 H 0.128 0.872 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.109 0.891 43 H 0.100 0.900 44 H 0.123 0.877 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -27.036 2.421 4.076 27.449 hybrid contribution 0.178 -0.923 -0.904 1.304 sum -26.859 1.499 3.172 27.087 Atomic orbital electron populations 1.21706 0.94592 1.02085 1.01826 1.21918 0.97055 0.94238 1.04449 1.20825 0.92050 0.95629 0.87564 0.86914 1.20820 0.90271 0.79360 0.81665 1.90743 1.64521 1.43846 1.38563 1.43183 1.06723 1.56657 1.24028 1.17219 0.81911 0.96568 1.09491 1.20547 0.93406 0.96055 0.98677 1.20106 0.93020 0.99479 1.07101 1.19403 0.85351 0.92983 0.92999 1.84005 1.14134 1.45695 1.64172 1.21255 0.90133 1.06349 1.29032 0.89178 1.25286 0.95314 0.98280 0.97680 1.70040 1.06407 1.32239 1.41050 0.85787 0.78302 0.79887 0.79476 1.19521 1.20295 1.19519 1.20975 0.93728 1.00097 1.08995 1.20471 0.93832 0.96038 1.00710 1.47897 1.51879 1.29289 1.05185 1.22098 0.94093 0.87706 0.97966 1.22568 0.98421 1.01937 0.93820 1.22324 0.99481 0.99570 0.98147 1.20731 0.79362 0.84662 0.83982 1.90743 1.36192 1.28194 1.83478 0.92572 0.92587 0.92228 0.90325 0.89541 0.76565 0.86091 0.86183 0.91975 0.85104 0.87161 0.90352 0.91010 0.89143 0.90028 0.87730 0.88253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.80 37.16 0.36 -0.57 16 2 C -0.14 -1.25 5.30 -26.73 -0.14 -1.39 16 3 C 0.15 1.49 2.68 -69.08 -0.19 1.30 16 4 H 0.11 0.77 8.07 -51.93 -0.42 0.35 16 5 C 0.49 7.41 6.59 -10.99 -0.07 7.34 16 6 O -0.50 -9.93 12.59 -9.61 -0.12 -10.05 16 7 N -0.66 -9.39 5.25 -9.82 -0.05 -9.44 16 8 C 0.04 0.75 6.27 -83.62 -0.52 0.22 16 9 C -0.07 -1.37 8.65 -39.41 -0.34 -1.71 16 10 C -0.18 -4.05 9.98 -39.42 -0.39 -4.44 16 11 C 0.15 3.67 6.65 -39.09 -0.26 3.41 16 12 O -0.18 -5.16 9.75 0.00 0.00 -5.16 16 13 C -0.39 -11.09 9.44 30.88 0.29 -10.80 16 14 H 0.09 2.34 5.29 -52.49 -0.28 2.06 16 15 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 16 N -0.86 -25.72 13.67 55.48 0.76 -24.97 16 17 Si 0.94 20.74 29.55 -169.99 -5.02 15.72 16 18 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 21 C -0.22 -4.83 9.12 -39.42 -0.36 -5.19 16 22 C -0.09 -1.69 9.96 -39.42 -0.39 -2.08 16 23 N -0.61 -6.21 2.08 -166.17 -0.35 -6.55 16 24 C 0.10 0.64 7.30 -3.12 -0.02 0.61 16 25 C -0.13 -0.62 7.18 -25.10 -0.18 -0.80 16 26 C -0.15 -1.28 6.86 -26.74 -0.18 -1.47 16 27 C 0.52 6.83 6.69 -10.86 -0.07 6.76 16 28 O -0.51 -9.25 15.34 -9.59 -0.15 -9.39 16 29 H 0.06 0.38 7.75 -51.93 -0.40 -0.02 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.58 7.32 -51.93 -0.38 0.20 16 33 H 0.09 1.08 6.65 -51.93 -0.35 0.74 16 34 H 0.40 4.06 8.03 -40.82 -0.33 3.73 16 35 H 0.12 2.42 6.45 -52.49 -0.34 2.08 16 36 H 0.12 2.66 8.06 -52.49 -0.42 2.23 16 37 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.13 2.85 5.71 -52.48 -0.30 2.55 16 39 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -37.91 372.33 -8.04 -45.95 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.15 Total: 6.11 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -2.57 Total: -7.82 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.36 Total: -40.96 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.27 Total: -24.61 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.91 -8.04 -45.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647091670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.984 kcal (2) G-P(sol) polarization free energy of solvation -37.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds