Wall clock time and date at job start Tue Mar 31 2020 17:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47239 * 2 1 4 4 H 1.08998 * 109.47027 * 304.99935 * 3 2 1 5 5 C 1.50691 * 109.47159 * 184.99867 * 3 2 1 6 6 O 1.21297 * 120.00143 * 239.99871 * 5 3 2 7 7 N 1.34778 * 119.99965 * 60.00169 * 5 3 2 8 8 C 1.39996 * 119.99765 * 174.80086 * 7 5 3 9 9 C 1.38926 * 120.00172 * 326.12875 * 8 7 5 10 10 C 1.38008 * 119.99443 * 179.76513 * 9 8 7 11 11 C 1.38907 * 120.00243 * 0.49128 * 10 9 8 12 12 O 1.35779 * 119.99682 * 179.74553 * 11 10 9 13 13 C 1.34816 * 116.99821 * 185.93790 * 12 11 10 14 14 H 1.07996 * 119.99930 * 5.40689 * 13 12 11 15 15 C 1.38627 * 119.99696 * 185.40535 * 13 12 11 16 16 N 1.31572 * 120.00122 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99903 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46726 * 60.00085 * 17 15 13 19 19 H 1.48497 * 109.47003 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47204 * 300.00059 * 17 15 13 21 21 C 1.38903 * 120.00178 * 359.76467 * 11 10 9 22 22 C 1.38004 * 120.00534 * 359.97438 * 21 11 10 23 23 N 1.46507 * 109.46967 * 64.99547 * 3 2 1 24 24 C 1.46761 * 124.34989 * 239.99872 * 23 3 2 25 25 C 1.54477 * 105.46955 * 162.96501 * 24 23 3 26 26 C 1.54631 * 101.76898 * 25.41751 * 25 24 23 27 27 C 1.34415 * 124.34526 * 59.98017 * 23 3 2 28 28 O 1.21285 * 124.94680 * 0.38820 * 27 23 3 29 29 H 1.08998 * 109.47184 * 300.00099 * 1 2 3 30 30 H 1.09005 * 109.47327 * 60.00191 * 1 2 3 31 31 H 1.09006 * 109.47217 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47184 * 239.99901 * 2 1 3 33 33 H 1.08997 * 109.46760 * 120.00080 * 2 1 3 34 34 H 0.96995 * 120.00461 * 354.80041 * 7 5 3 35 35 H 1.08001 * 120.00115 * 0.02562 * 9 8 7 36 36 H 1.07995 * 119.99628 * 180.21166 * 10 9 8 37 37 H 0.97004 * 119.99733 * 180.02562 * 16 15 13 38 38 H 1.08003 * 119.99834 * 179.97438 * 21 11 10 39 39 H 1.08005 * 119.99879 * 179.97438 * 22 21 11 40 40 H 1.09001 * 110.24592 * 43.96767 * 24 23 3 41 41 H 1.08996 * 110.24707 * 281.96331 * 24 23 3 42 42 H 1.09002 * 110.96845 * 143.53448 * 25 24 23 43 43 H 1.09001 * 110.97113 * 267.29964 * 25 24 23 44 44 H 1.08996 * 110.48789 * 93.87595 * 26 25 24 45 45 H 1.08998 * 110.48832 * 216.52461 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 8 4.2217 1.9436 0.7479 7 7 4.1297 0.8911 -1.2031 8 6 5.5161 0.9883 -1.3719 9 6 6.1906 2.1232 -0.9396 10 6 7.5579 2.2168 -1.1016 11 6 8.2583 1.1807 -1.7061 12 8 9.6028 1.2751 -1.8702 13 6 10.2041 0.2937 -2.5722 14 1 9.6095 -0.4717 -3.0485 15 6 11.5857 0.2672 -2.6826 16 7 12.3102 1.1994 -2.1019 17 14 12.4190 -1.0930 -3.6548 18 1 11.9472 -1.0557 -5.0623 19 1 13.8904 -0.8955 -3.6210 20 1 12.0818 -2.4086 -3.0543 21 6 7.5831 0.0482 -2.1432 22 6 6.2165 -0.0479 -1.9764 23 7 1.6523 2.0975 1.2518 24 6 0.8075 3.2948 1.3328 25 6 0.3189 3.3560 2.7970 26 6 1.4359 2.5822 3.5349 27 6 2.0245 1.6788 2.4737 28 8 2.7290 0.7163 2.6936 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.5923 0.4256 -1.8629 35 1 5.6455 2.9304 -0.4729 36 1 8.0828 3.0976 -0.7625 37 1 13.2769 1.1810 -2.1795 38 1 8.1276 -0.7572 -2.6136 39 1 5.6916 -0.9284 -2.3166 40 1 -0.0415 3.2039 0.6553 41 1 1.3897 4.1843 1.0920 42 1 0.2623 4.3869 3.1466 43 1 -0.6424 2.8544 2.9088 44 1 2.1921 3.2708 3.9118 45 1 1.0167 1.9913 4.3493 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647091670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:29 Heat of formation + Delta-G solvation = -87.961450 kcal Electronic energy + Delta-G solvation = -28277.201974 eV Core-core repulsion = 24259.671334 eV Total energy + Delta-G solvation = -4017.530639 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.06214 -41.05475 -40.16325 -38.18534 -37.40404 -35.99056 -35.27487 -34.15407 -31.96835 -31.89135 -30.01492 -28.43980 -27.96689 -27.15311 -24.07040 -23.46712 -23.16553 -22.69903 -21.83949 -20.23157 -19.81437 -19.03028 -18.70371 -18.09931 -17.45041 -17.05648 -16.52426 -16.38921 -16.22785 -15.82494 -15.52230 -15.45803 -15.26372 -15.02543 -14.59572 -14.55120 -14.29599 -14.25402 -13.80128 -13.74038 -13.59384 -13.38668 -13.27546 -13.24557 -12.94427 -12.71644 -12.44877 -12.37868 -12.15457 -12.13969 -11.99230 -11.78567 -11.42449 -11.15267 -10.90914 -10.66619 -10.56552 -9.90009 -9.67931 -8.63946 -8.47031 -6.14759 0.47037 0.49640 1.35363 1.45036 1.52295 1.53223 1.62549 1.88976 2.17908 2.28532 2.80283 3.13702 3.41873 3.47384 3.60554 3.70207 3.82860 3.96032 4.01741 4.07867 4.08066 4.23632 4.36800 4.44603 4.48163 4.58671 4.69875 4.70732 4.71568 4.79499 4.87970 5.03295 5.06203 5.11277 5.12706 5.17679 5.25110 5.26685 5.37349 5.40536 5.51823 5.58607 5.64957 6.00324 6.12262 6.17229 6.48939 6.96791 7.16759 7.28357 7.77111 8.76277 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025535 B = 0.002347 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.280177 B =11926.056539 C =12439.483258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.134 4.134 3 C 0.149 3.851 4 H 0.160 0.840 5 C 0.489 3.511 6 O -0.555 6.555 7 N -0.647 5.647 8 C 0.065 3.935 9 C -0.073 4.073 10 C -0.190 4.190 11 C 0.108 3.892 12 O -0.231 6.231 13 C -0.414 4.414 14 H 0.106 0.894 15 C -0.026 4.026 16 N -0.923 5.923 17 Si 1.021 2.979 18 H -0.254 1.254 19 H -0.274 1.274 20 H -0.257 1.257 21 C -0.219 4.219 22 C -0.082 4.082 23 N -0.606 5.606 24 C 0.096 3.904 25 C -0.114 4.114 26 C -0.156 4.156 27 C 0.506 3.494 28 O -0.578 6.578 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.044 0.956 34 H 0.425 0.575 35 H 0.126 0.874 36 H 0.111 0.889 37 H 0.273 0.727 38 H 0.133 0.867 39 H 0.159 0.841 40 H 0.114 0.886 41 H 0.071 0.929 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.972 1.449 1.550 33.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.173 4.173 3 C 0.042 3.958 4 H 0.178 0.822 5 C 0.276 3.724 6 O -0.431 6.431 7 N -0.296 5.296 8 C -0.028 4.028 9 C -0.093 4.093 10 C -0.210 4.210 11 C 0.057 3.943 12 O -0.138 6.138 13 C -0.490 4.490 14 H 0.123 0.877 15 C -0.223 4.223 16 N -0.561 5.561 17 Si 0.840 3.160 18 H -0.178 1.178 19 H -0.198 1.198 20 H -0.181 1.181 21 C -0.239 4.239 22 C -0.101 4.101 23 N -0.339 5.339 24 C -0.025 4.025 25 C -0.152 4.152 26 C -0.196 4.196 27 C 0.296 3.704 28 O -0.457 6.457 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.063 0.937 34 H 0.264 0.736 35 H 0.143 0.857 36 H 0.129 0.871 37 H 0.082 0.918 38 H 0.151 0.849 39 H 0.176 0.824 40 H 0.132 0.868 41 H 0.090 0.910 42 H 0.131 0.869 43 H 0.120 0.880 44 H 0.117 0.883 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -31.816 1.543 2.331 31.938 hybrid contribution 1.265 -0.560 -0.262 1.408 sum -30.551 0.984 2.069 30.637 Atomic orbital electron populations 1.21667 0.92138 1.02712 1.02954 1.21905 0.99066 0.92937 1.03355 1.21052 0.88170 0.97332 0.89211 0.82249 1.21898 0.92481 0.77514 0.80521 1.90736 1.66184 1.45882 1.40344 1.43139 1.04908 1.56693 1.24822 1.17381 0.84166 0.95120 1.06168 1.20650 0.92462 0.97289 0.98869 1.20230 0.94163 0.99143 1.07444 1.19842 0.84617 0.94903 0.94960 1.83969 1.16171 1.47206 1.66414 1.21831 0.90974 1.06610 1.29568 0.87667 1.26663 0.95710 1.01104 0.98796 1.70204 1.06760 1.35174 1.43966 0.84613 0.76870 0.76261 0.78241 1.17761 1.19831 1.18143 1.21143 0.95278 0.99029 1.08419 1.20853 0.92499 0.97367 0.99430 1.48136 1.51345 1.29982 1.04428 1.22465 0.94537 0.85830 0.99692 1.22617 0.97598 1.02835 0.92139 1.22379 1.00550 0.99130 0.97537 1.21602 0.78612 0.84274 0.85941 1.90694 1.39195 1.31115 1.84721 0.92990 0.89789 0.91983 0.88406 0.93709 0.73570 0.85660 0.87063 0.91847 0.84914 0.82377 0.86759 0.91023 0.86892 0.88036 0.88267 0.87558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.80 71.98 0.71 -0.51 16 2 C -0.13 -2.03 5.30 30.59 0.16 -1.86 16 3 C 0.15 2.54 2.68 44.24 0.12 2.66 16 4 H 0.16 1.26 8.07 -2.39 -0.02 1.24 16 5 C 0.49 13.74 6.59 87.65 0.58 14.32 16 6 O -0.56 -21.91 12.59 11.40 0.14 -21.77 16 7 N -0.65 -16.46 5.25 -303.37 -1.59 -18.06 16 8 C 0.07 2.31 6.27 38.16 0.24 2.55 16 9 C -0.07 -3.01 8.65 22.38 0.19 -2.81 16 10 C -0.19 -9.12 9.98 22.38 0.22 -8.90 16 11 C 0.11 5.64 6.65 22.59 0.15 5.79 16 12 O -0.23 -14.40 9.75 -22.92 -0.22 -14.62 16 13 C -0.41 -24.47 9.44 67.91 0.64 -23.83 16 14 H 0.11 5.59 5.29 -2.91 -0.02 5.58 16 15 C -0.03 -1.48 5.49 84.82 0.47 -1.01 16 16 N -0.92 -58.06 13.67 21.61 0.30 -57.77 16 17 Si 1.02 43.29 29.55 68.60 2.03 45.32 16 18 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 19 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 21 C -0.22 -9.70 9.12 22.37 0.20 -9.50 16 22 C -0.08 -2.86 9.96 22.38 0.22 -2.64 16 23 N -0.61 -10.95 2.08 -798.22 -1.66 -12.61 16 24 C 0.10 0.79 7.30 86.83 0.63 1.42 16 25 C -0.11 -0.68 7.18 31.65 0.23 -0.45 16 26 C -0.16 -2.41 6.86 30.59 0.21 -2.20 16 27 C 0.51 13.03 6.69 87.90 0.59 13.61 16 28 O -0.58 -21.78 15.34 11.44 0.18 -21.60 16 29 H 0.05 0.52 7.75 -2.39 -0.02 0.50 16 30 H 0.08 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.10 1.05 7.32 -2.39 -0.02 1.03 16 33 H 0.04 1.09 6.65 -2.39 -0.02 1.08 16 34 H 0.43 6.63 8.03 -92.71 -0.74 5.89 16 35 H 0.13 5.08 6.45 -2.91 -0.02 5.06 16 36 H 0.11 5.36 8.06 -2.91 -0.02 5.33 16 37 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 38 H 0.13 5.77 5.71 -2.91 -0.02 5.75 16 39 H 0.16 4.05 8.06 -2.91 -0.02 4.03 16 40 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.10 0.25 8.14 -2.39 -0.02 0.24 16 44 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -93.24 372.33 5.01 -88.23 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.28 Total: 26.24 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 5.56 Total: -13.36 kcal Atomic # 7 Polarization: -85.48 SS G_CDS: -2.95 Total: -88.43 kcal Atomic # 8 Polarization: -58.09 SS G_CDS: 0.10 Total: -57.99 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -93.24 5.01 -88.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647091670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.266 kcal (2) G-P(sol) polarization free energy of solvation -93.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds