Wall clock time and date at job start Tue Mar 31 2020 17:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46990 * 2 1 4 4 C 1.50706 * 109.46706 * 240.00192 * 2 1 3 5 5 H 1.07998 * 119.99639 * 239.99564 * 4 2 1 6 6 C 1.37877 * 119.99985 * 60.00416 * 4 2 1 7 7 N 1.31515 * 120.00224 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99652 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47203 * 59.99926 * 8 6 4 10 10 H 1.48499 * 109.46906 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47105 * 299.99463 * 8 6 4 12 12 C 1.53001 * 109.47372 * 120.00307 * 2 1 3 13 13 O 1.45195 * 109.46998 * 300.00178 * 12 2 1 14 14 C 1.34708 * 117.00143 * 179.97438 * 13 12 2 15 15 O 1.21473 * 119.99970 * 0.02562 * 14 13 12 16 16 C 1.47741 * 120.00404 * 179.97438 * 14 13 12 17 17 C 1.39670 * 120.11320 * 359.97438 * 16 14 13 18 18 C 1.37966 * 119.99127 * 180.02562 * 17 16 14 19 19 C 1.38268 * 120.22565 * 359.71898 * 18 17 16 20 20 C 1.38952 * 120.23018 * 0.55850 * 19 18 17 21 21 N 1.39985 * 119.99486 * 179.71980 * 20 19 18 22 22 C 1.47051 * 125.40935 * 353.67623 * 21 20 19 23 23 C 1.54099 * 103.86472 * 179.87020 * 22 21 20 24 24 N 1.47053 * 103.85816 * 0.37547 * 23 22 21 25 25 C 1.33944 * 125.41035 * 173.98070 * 21 20 19 26 26 O 1.21590 * 123.04198 * 0.02562 * 25 21 20 27 27 C 1.38619 * 120.00886 * 359.44730 * 20 19 18 28 28 H 1.08997 * 109.46499 * 299.99531 * 1 2 3 29 29 H 1.08999 * 109.46969 * 59.99802 * 1 2 3 30 30 H 1.09000 * 109.46556 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47038 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47426 * 299.99918 * 3 2 1 33 33 H 1.08992 * 109.47346 * 60.00420 * 3 2 1 34 34 H 0.96994 * 120.00035 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.47203 * 179.97438 * 12 2 1 36 36 H 1.09001 * 109.46885 * 59.99607 * 12 2 1 37 37 H 1.07997 * 120.00977 * 359.97438 * 17 16 14 38 38 H 1.07996 * 119.88595 * 180.02562 * 18 17 16 39 39 H 1.07995 * 119.88987 * 180.30523 * 19 18 17 40 40 H 1.09006 * 110.54975 * 298.59432 * 22 21 20 41 41 H 1.09003 * 110.54822 * 61.40118 * 22 21 20 42 42 H 1.08999 * 110.76218 * 241.68149 * 23 22 21 43 43 H 1.09004 * 110.46640 * 118.92157 * 23 22 21 44 44 H 0.97008 * 125.40882 * 179.76318 * 24 23 22 45 45 H 1.07997 * 120.11088 * 180.25310 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5197 -4.0083 10 1 1.8269 -0.4198 -5.2205 11 1 3.8074 -1.1189 -4.0078 12 6 2.0401 -0.7213 1.2492 13 8 1.5561 -0.0369 2.4347 14 6 1.9177 -0.5491 3.6270 15 8 2.6185 -1.5401 3.6750 16 6 1.4628 0.0950 4.8764 17 6 0.6582 1.2355 4.8241 18 6 0.2353 1.8353 5.9923 19 6 0.6003 1.3079 7.2173 20 6 1.4052 0.1770 7.2802 21 7 1.7767 -0.3493 8.5230 22 6 1.4961 0.2678 9.8279 23 6 2.1127 -0.7154 10.8416 24 7 2.6834 -1.7775 9.9998 25 6 2.4492 -1.4922 8.7122 26 8 2.8144 -2.2056 7.7979 27 6 1.8357 -0.4334 6.1124 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 0.7082 1.1610 -3.4844 35 1 3.1301 -0.7217 1.2489 36 1 1.6767 -1.7490 1.2491 37 1 0.3678 1.6483 3.8693 38 1 -0.3871 2.7168 5.9499 39 1 0.2622 1.7790 8.1283 40 1 1.9743 1.2447 9.8999 41 1 0.4212 0.3543 9.9870 42 1 1.3461 -1.1210 11.5019 43 1 2.8949 -0.2249 11.4211 44 1 3.1545 -2.5606 10.3252 45 1 2.4580 -1.3148 6.1594 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650449436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:24 Heat of formation + Delta-G solvation = -66.752319 kcal Electronic energy + Delta-G solvation = -28088.761503 eV Core-core repulsion = 24072.150561 eV Total energy + Delta-G solvation = -4016.610942 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.83922 -40.00847 -38.60995 -36.90085 -36.41747 -34.79333 -34.60440 -31.44681 -31.08335 -30.27011 -29.07849 -26.00655 -25.56366 -25.17735 -24.36548 -23.70314 -22.95595 -21.09067 -20.16308 -18.77356 -18.41752 -17.50026 -17.18467 -16.73436 -16.35401 -15.85542 -15.65085 -15.52726 -15.15112 -14.75430 -14.60028 -14.34557 -14.10075 -13.74795 -13.68982 -13.13274 -13.04306 -12.88851 -12.76713 -12.43136 -11.97607 -11.89338 -11.61074 -11.41488 -11.12737 -10.90410 -10.69600 -10.55083 -10.35617 -10.18471 -10.14327 -10.01621 -9.81920 -9.68278 -9.35040 -9.25661 -9.10216 -8.71270 -8.32739 -8.13462 -5.97420 -4.08611 0.72837 1.24269 1.96499 2.62410 2.97758 3.18175 3.33399 3.37203 3.38436 3.44413 3.74920 3.84471 4.30365 4.35176 4.43110 4.73166 4.76883 4.79565 4.97572 5.06481 5.17398 5.24111 5.28865 5.43151 5.49294 5.83158 6.12320 6.18410 6.18753 6.26106 6.29102 6.39786 6.54284 6.64668 6.80720 6.85109 7.03246 7.04168 7.12539 7.19408 7.21639 7.46072 7.67645 7.74736 8.10394 8.11377 8.20681 8.33815 8.45083 8.91035 9.56481 11.03783 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028392 B = 0.002324 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.957536 B =12043.824640 C =12824.711662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.070 3.930 3 C -0.129 4.129 4 C -0.511 4.511 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.084 3.916 13 O -0.343 6.343 14 C 0.496 3.504 15 O -0.508 6.508 16 C -0.086 4.086 17 C -0.085 4.085 18 C -0.104 4.104 19 C -0.132 4.132 20 C 0.171 3.829 21 N -0.571 5.571 22 C 0.086 3.914 23 C 0.093 3.907 24 N -0.738 5.738 25 C 0.695 3.305 26 O -0.555 6.555 27 C -0.096 4.096 28 H 0.017 0.983 29 H 0.084 0.916 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.084 0.916 33 H 0.017 0.983 34 H 0.261 0.739 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.145 0.855 38 H 0.136 0.864 39 H 0.128 0.872 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.434 0.566 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.283 4.079 29.393 29.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.070 3.930 3 C -0.187 4.187 4 C -0.549 4.549 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C 0.012 3.988 13 O -0.258 6.258 14 C 0.340 3.660 15 O -0.398 6.398 16 C -0.088 4.088 17 C -0.104 4.104 18 C -0.123 4.123 19 C -0.153 4.153 20 C 0.078 3.922 21 N -0.298 5.298 22 C -0.037 4.037 23 C -0.032 4.032 24 N -0.401 5.401 25 C 0.396 3.604 26 O -0.431 6.431 27 C -0.116 4.116 28 H 0.036 0.964 29 H 0.103 0.897 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.103 0.897 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.162 0.838 38 H 0.154 0.846 39 H 0.146 0.854 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.276 0.724 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.989 3.560 28.673 28.962 hybrid contribution 0.592 -0.867 -0.486 1.157 sum -1.397 2.693 28.187 28.350 Atomic orbital electron populations 1.21771 0.97304 0.98997 1.00635 1.18243 0.93436 0.93074 0.88231 1.21768 0.98122 0.98173 1.00635 1.20911 1.31920 1.12270 0.89819 0.92547 1.24851 0.94835 0.94933 0.98744 1.69819 1.36340 1.22600 1.23342 0.86600 0.79220 0.79761 0.82074 1.20260 1.21246 1.20258 1.23703 0.98297 0.95879 0.80960 1.86552 1.69127 1.55628 1.14533 1.21068 0.77853 0.82103 0.84935 1.90819 1.35427 1.25208 1.88329 1.19134 1.01410 0.97371 0.90840 1.21590 0.95193 0.93842 0.99825 1.20909 1.00108 1.00143 0.91093 1.20861 0.99449 0.95990 0.99021 1.17150 0.97893 0.94854 0.82346 1.44424 1.57096 1.23004 1.05312 1.22575 1.02494 0.97897 0.80729 1.22390 0.98869 0.88203 0.93780 1.45086 1.62356 1.27205 1.05408 1.15908 0.79144 0.81358 0.83995 1.90967 1.56878 1.52597 1.42667 1.21715 0.99545 1.01539 0.88825 0.96422 0.89744 0.95821 0.95828 0.89749 0.96422 0.92896 0.92450 0.92449 0.83751 0.84612 0.85394 0.88941 0.89004 0.89417 0.89443 0.72377 0.81127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.11 37.16 0.30 -2.87 16 2 C 0.07 1.77 0.58 -155.66 -0.09 1.68 16 3 C -0.13 -3.17 8.11 37.15 0.30 -2.87 16 4 C -0.51 -13.98 8.01 -34.44 -0.28 -14.26 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.85 5.15 -17.82 -0.09 1.75 16 7 N -0.88 -24.27 9.35 55.43 0.52 -23.75 16 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 C 0.08 1.97 4.27 37.16 0.16 2.13 16 13 O -0.34 -7.29 8.13 -40.51 -0.33 -7.62 16 14 C 0.50 10.13 7.90 34.61 0.27 10.40 16 15 O -0.51 -11.75 16.13 -19.25 -0.31 -12.06 16 16 C -0.09 -1.43 5.87 -105.01 -0.62 -2.04 16 17 C -0.09 -1.15 9.61 -39.15 -0.38 -1.52 16 18 C -0.10 -1.04 10.02 -39.67 -0.40 -1.44 16 19 C -0.13 -1.23 9.49 -39.31 -0.37 -1.61 16 20 C 0.17 2.10 6.61 -83.73 -0.55 1.54 16 21 N -0.57 -5.78 3.16 -118.28 -0.37 -6.15 16 22 C 0.09 0.37 6.48 -3.17 -0.02 0.35 16 23 C 0.09 0.27 8.06 -3.17 -0.03 0.24 16 24 N -0.74 -5.12 6.37 -64.70 -0.41 -5.53 16 25 C 0.70 8.37 8.52 -88.40 -0.75 7.61 16 26 O -0.56 -9.48 14.75 5.29 0.08 -9.40 16 27 C -0.10 -1.54 8.83 -38.97 -0.34 -1.89 16 28 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 29 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 33 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 34 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.14 1.93 7.61 -52.49 -0.40 1.53 16 38 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.13 0.73 7.27 -52.49 -0.38 0.35 16 40 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.09 0.23 8.10 -51.93 -0.42 -0.19 16 42 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 43 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 44 H 0.43 2.28 8.96 -40.82 -0.37 1.91 16 45 H 0.17 3.26 4.86 -52.49 -0.26 3.00 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -34.91 369.77 -9.33 -44.25 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.17 Total: 1.26 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -2.88 Total: -2.78 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: -0.27 Total: -35.43 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.56 Total: -29.09 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.91 -9.33 -44.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650449436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.505 kcal (2) G-P(sol) polarization free energy of solvation -34.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds