Wall clock time and date at job start Tue Mar 31 2020 17:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46990 * 2 1 4 4 C 1.50706 * 109.46706 * 240.00192 * 2 1 3 5 5 H 1.07998 * 119.99639 * 239.99564 * 4 2 1 6 6 C 1.37877 * 119.99985 * 60.00416 * 4 2 1 7 7 N 1.31515 * 120.00224 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99652 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47203 * 59.99926 * 8 6 4 10 10 H 1.48499 * 109.46906 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47105 * 299.99463 * 8 6 4 12 12 C 1.53001 * 109.47372 * 120.00307 * 2 1 3 13 13 O 1.45195 * 109.46998 * 300.00178 * 12 2 1 14 14 C 1.34708 * 117.00143 * 179.97438 * 13 12 2 15 15 O 1.21473 * 119.99970 * 0.02562 * 14 13 12 16 16 C 1.47741 * 120.00404 * 179.97438 * 14 13 12 17 17 C 1.39670 * 120.11320 * 359.97438 * 16 14 13 18 18 C 1.37966 * 119.99127 * 180.02562 * 17 16 14 19 19 C 1.38268 * 120.22565 * 359.71898 * 18 17 16 20 20 C 1.38952 * 120.23018 * 0.55850 * 19 18 17 21 21 N 1.39985 * 119.99486 * 179.71980 * 20 19 18 22 22 C 1.47051 * 125.40935 * 353.67623 * 21 20 19 23 23 C 1.54099 * 103.86472 * 179.87020 * 22 21 20 24 24 N 1.47053 * 103.85816 * 0.37547 * 23 22 21 25 25 C 1.33944 * 125.41035 * 173.98070 * 21 20 19 26 26 O 1.21590 * 123.04198 * 0.02562 * 25 21 20 27 27 C 1.38619 * 120.00886 * 359.44730 * 20 19 18 28 28 H 1.08997 * 109.46499 * 299.99531 * 1 2 3 29 29 H 1.08999 * 109.46969 * 59.99802 * 1 2 3 30 30 H 1.09000 * 109.46556 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47038 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47426 * 299.99918 * 3 2 1 33 33 H 1.08992 * 109.47346 * 60.00420 * 3 2 1 34 34 H 0.96994 * 120.00035 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.47203 * 179.97438 * 12 2 1 36 36 H 1.09001 * 109.46885 * 59.99607 * 12 2 1 37 37 H 1.07997 * 120.00977 * 359.97438 * 17 16 14 38 38 H 1.07996 * 119.88595 * 180.02562 * 18 17 16 39 39 H 1.07995 * 119.88987 * 180.30523 * 19 18 17 40 40 H 1.09006 * 110.54975 * 298.59432 * 22 21 20 41 41 H 1.09003 * 110.54822 * 61.40118 * 22 21 20 42 42 H 1.08999 * 110.76218 * 241.68149 * 23 22 21 43 43 H 1.09004 * 110.46640 * 118.92157 * 23 22 21 44 44 H 0.97008 * 125.40882 * 179.76318 * 24 23 22 45 45 H 1.07997 * 120.11088 * 180.25310 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5197 -4.0083 10 1 1.8269 -0.4198 -5.2205 11 1 3.8074 -1.1189 -4.0078 12 6 2.0401 -0.7213 1.2492 13 8 1.5561 -0.0369 2.4347 14 6 1.9177 -0.5491 3.6270 15 8 2.6185 -1.5401 3.6750 16 6 1.4628 0.0950 4.8764 17 6 0.6582 1.2355 4.8241 18 6 0.2353 1.8353 5.9923 19 6 0.6003 1.3079 7.2173 20 6 1.4052 0.1770 7.2802 21 7 1.7767 -0.3493 8.5230 22 6 1.4961 0.2678 9.8279 23 6 2.1127 -0.7154 10.8416 24 7 2.6834 -1.7775 9.9998 25 6 2.4492 -1.4922 8.7122 26 8 2.8144 -2.2056 7.7979 27 6 1.8357 -0.4334 6.1124 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 0.7082 1.1610 -3.4844 35 1 3.1301 -0.7217 1.2489 36 1 1.6767 -1.7490 1.2491 37 1 0.3678 1.6483 3.8693 38 1 -0.3871 2.7168 5.9499 39 1 0.2622 1.7790 8.1283 40 1 1.9743 1.2447 9.8999 41 1 0.4212 0.3543 9.9870 42 1 1.3461 -1.1210 11.5019 43 1 2.8949 -0.2249 11.4211 44 1 3.1545 -2.5606 10.3252 45 1 2.4580 -1.3148 6.1594 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650449436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:22 Heat of formation + Delta-G solvation = -89.498213 kcal Electronic energy + Delta-G solvation = -28089.747839 eV Core-core repulsion = 24072.150561 eV Total energy + Delta-G solvation = -4017.597278 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.56865 -41.54076 -39.71961 -38.26884 -37.73308 -36.64144 -35.39241 -33.30721 -32.31493 -31.04621 -29.66614 -27.77758 -27.57476 -27.20234 -25.42690 -24.61035 -23.78791 -22.01171 -21.41112 -20.71966 -19.37264 -18.54855 -17.91691 -17.83871 -17.72141 -17.43174 -17.38674 -16.93808 -16.46223 -16.06092 -15.44275 -15.05751 -14.96552 -14.91544 -14.86473 -14.69014 -14.58485 -14.26745 -13.73293 -13.38640 -13.21126 -13.13748 -13.13083 -12.83201 -12.79740 -12.76053 -12.66358 -12.33136 -12.14070 -11.76156 -11.73517 -11.39755 -11.30976 -11.22291 -11.13505 -10.75932 -10.40869 -10.26147 -10.11205 -8.96320 -8.05373 -6.23340 -0.38288 0.26625 1.26974 1.43228 1.43512 1.44036 1.51170 1.72062 1.94456 2.44628 2.78666 2.87804 3.17521 3.45809 3.58564 3.74664 4.03920 4.13273 4.16207 4.19149 4.21620 4.25888 4.38838 4.47733 4.57261 4.66648 4.82286 4.84492 4.90900 4.92425 5.03439 5.19011 5.22799 5.23100 5.31261 5.36490 5.37689 5.46949 5.52419 5.63442 5.63572 5.91476 6.06675 6.07246 6.16291 6.34459 6.36288 6.67960 6.80476 7.33566 7.43954 8.94298 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028392 B = 0.002324 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.957536 B =12043.824640 C =12824.711662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.063 3.937 3 C -0.118 4.118 4 C -0.537 4.537 5 H 0.046 0.954 6 C 0.030 3.970 7 N -0.897 5.897 8 Si 0.953 3.047 9 H -0.276 1.276 10 H -0.278 1.278 11 H -0.276 1.276 12 C 0.095 3.905 13 O -0.339 6.339 14 C 0.493 3.507 15 O -0.550 6.550 16 C -0.114 4.114 17 C -0.091 4.091 18 C -0.086 4.086 19 C -0.101 4.101 20 C 0.169 3.831 21 N -0.574 5.574 22 C 0.076 3.924 23 C 0.091 3.909 24 N -0.727 5.727 25 C 0.678 3.322 26 O -0.623 6.623 27 C -0.126 4.126 28 H 0.035 0.965 29 H 0.067 0.933 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.067 0.933 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.046 0.954 36 H 0.045 0.955 37 H 0.143 0.857 38 H 0.182 0.818 39 H 0.183 0.817 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.439 0.561 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.055 6.808 32.757 33.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.063 3.937 3 C -0.176 4.176 4 C -0.575 4.575 5 H 0.064 0.936 6 C -0.171 4.171 7 N -0.535 5.535 8 Si 0.779 3.221 9 H -0.202 1.202 10 H -0.203 1.203 11 H -0.201 1.201 12 C 0.022 3.978 13 O -0.255 6.255 14 C 0.340 3.660 15 O -0.442 6.442 16 C -0.116 4.116 17 C -0.110 4.110 18 C -0.104 4.104 19 C -0.121 4.121 20 C 0.074 3.926 21 N -0.300 5.300 22 C -0.044 4.044 23 C -0.032 4.032 24 N -0.389 5.389 25 C 0.378 3.622 26 O -0.504 6.504 27 C -0.147 4.147 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.161 0.839 38 H 0.199 0.801 39 H 0.200 0.800 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.282 0.718 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.781 6.327 32.127 32.962 hybrid contribution 1.116 -1.671 -1.321 2.405 sum -2.664 4.656 30.806 31.269 Atomic orbital electron populations 1.21624 0.96802 0.98582 1.00588 1.18270 0.93846 0.93378 0.88205 1.21620 0.97668 0.97699 1.00592 1.21150 1.32570 1.12537 0.91273 0.93617 1.25492 0.94946 0.95602 1.01039 1.69914 1.36455 1.23106 1.23998 0.85701 0.78621 0.78717 0.79084 1.20176 1.20285 1.20139 1.23341 0.97498 0.95292 0.81711 1.86537 1.69134 1.55316 1.14469 1.21945 0.76844 0.81633 0.85587 1.90785 1.37545 1.27225 1.88694 1.18956 1.04459 0.99481 0.88724 1.21697 0.94842 0.92853 1.01586 1.21415 0.98845 1.00474 0.89686 1.21415 0.96225 0.93577 1.00922 1.17315 0.97811 0.95377 0.82051 1.44571 1.56284 1.22674 1.06516 1.23132 1.04804 0.98874 0.77603 1.22797 1.00307 0.86838 0.93245 1.45141 1.61336 1.28140 1.04245 1.16413 0.79308 0.81691 0.84799 1.90932 1.59503 1.54834 1.45131 1.21484 1.01025 1.01577 0.90637 0.94592 0.91421 0.96396 0.96358 0.91435 0.94578 0.92681 0.93543 0.93611 0.83946 0.80076 0.79978 0.86463 0.86145 0.86613 0.86791 0.71775 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 8.11 71.98 0.58 -5.31 16 2 C 0.06 3.27 0.58 -52.93 -0.03 3.24 16 3 C -0.12 -5.87 8.11 71.98 0.58 -5.28 16 4 C -0.54 -30.20 8.01 25.60 0.21 -29.99 16 5 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 6 C 0.03 1.62 5.15 84.65 0.44 2.05 16 7 N -0.90 -49.59 9.35 21.45 0.20 -49.39 16 8 Si 0.95 43.96 29.54 68.60 2.03 45.98 16 9 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 12 C 0.09 4.68 4.27 71.98 0.31 4.98 16 13 O -0.34 -15.06 8.13 -56.17 -0.46 -15.52 16 14 C 0.49 21.58 7.90 70.33 0.56 22.13 16 15 O -0.55 -27.92 16.13 19.92 0.32 -27.60 16 16 C -0.11 -3.97 5.87 -20.11 -0.12 -4.09 16 17 C -0.09 -2.31 9.61 22.55 0.22 -2.10 16 18 C -0.09 -1.33 10.02 22.21 0.22 -1.11 16 19 C -0.10 -1.38 9.49 22.45 0.21 -1.17 16 20 C 0.17 3.88 6.61 38.10 0.25 4.14 16 21 N -0.57 -10.50 3.16 -646.85 -2.04 -12.54 16 22 C 0.08 0.28 6.48 86.65 0.56 0.85 16 23 C 0.09 0.14 8.06 86.65 0.70 0.84 16 24 N -0.73 -9.11 6.37 -477.34 -3.04 -12.15 16 25 C 0.68 16.53 8.52 179.57 1.53 18.06 16 26 O -0.62 -23.34 14.75 -4.00 -0.06 -23.40 16 27 C -0.13 -4.30 8.83 22.67 0.20 -4.10 16 28 H 0.04 1.60 7.68 -2.39 -0.02 1.58 16 29 H 0.07 3.60 6.07 -2.39 -0.01 3.58 16 30 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.07 3.59 6.07 -2.39 -0.01 3.57 16 33 H 0.04 1.60 7.68 -2.39 -0.02 1.58 16 34 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 35 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.14 3.64 7.61 -2.91 -0.02 3.62 16 38 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.18 0.58 7.27 -2.91 -0.02 0.56 16 40 H 0.12 -0.09 8.14 -2.38 -0.02 -0.11 16 41 H 0.12 -0.18 8.10 -2.39 -0.02 -0.20 16 42 H 0.12 -0.38 8.14 -2.39 -0.02 -0.40 16 43 H 0.11 -0.35 8.14 -2.38 -0.02 -0.37 16 44 H 0.44 4.34 8.96 -92.70 -0.83 3.50 16 45 H 0.13 5.58 4.86 -2.91 -0.01 5.57 16 Total: -1.00 -84.76 369.77 3.56 -81.20 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.19 Total: 10.26 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 6.42 Total: 3.16 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -4.88 Total: -74.09 kcal Atomic # 8 Polarization: -66.32 SS G_CDS: -0.19 Total: -66.51 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -84.76 3.56 -81.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650449436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.302 kcal (2) G-P(sol) polarization free energy of solvation -84.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds