Wall clock time and date at job start Tue Mar 31 2020 17:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46757 * 194.65902 * 3 2 1 5 5 O 1.42905 * 109.47149 * 180.02562 * 4 3 2 6 6 C 1.35705 * 117.00115 * 179.97438 * 5 4 3 7 7 C 1.38995 * 119.91431 * 179.97438 * 6 5 4 8 8 C 1.37701 * 120.09033 * 180.02562 * 7 6 5 9 9 C 1.39726 * 119.91361 * 359.97438 * 8 7 6 10 10 C 1.47606 * 120.09018 * 180.02562 * 9 8 7 11 11 O 1.21579 * 119.99955 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00067 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00258 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47551 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.47626 * 305.00563 * 14 13 12 16 16 O 1.42907 * 109.46828 * 65.00150 * 14 13 12 17 17 C 1.53003 * 109.47495 * 184.99999 * 14 13 12 18 18 N 1.46497 * 109.47011 * 180.02562 * 17 14 13 19 19 C 1.36937 * 119.99663 * 180.02562 * 18 17 14 20 20 H 1.07999 * 120.00303 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00019 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00073 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00133 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47109 * 89.99442 * 23 21 19 25 25 H 1.48497 * 109.47245 * 209.99684 * 23 21 19 26 26 H 1.48501 * 109.46822 * 329.99944 * 23 21 19 27 27 C 1.39739 * 119.82418 * 0.27861 * 9 8 7 28 28 C 1.37704 * 119.90870 * 359.46411 * 27 9 8 29 29 H 4.44648 * 5.63355 * 180.02562 * 4 1 2 30 30 H 1.09004 * 109.47184 * 74.66183 * 3 2 1 31 31 H 1.08997 * 109.47353 * 314.65616 * 3 2 1 32 32 H 1.08996 * 109.47193 * 59.99912 * 4 3 2 33 33 H 1.09000 * 109.47458 * 299.99899 * 4 3 2 34 34 H 1.08001 * 119.95476 * 359.97438 * 7 6 5 35 35 H 1.08006 * 120.03997 * 179.97438 * 8 7 6 36 36 H 0.96999 * 120.00047 * 0.02562 * 12 10 9 37 37 H 1.09000 * 109.47024 * 300.00478 * 13 12 10 38 38 H 1.09004 * 109.46875 * 60.00324 * 13 12 10 39 39 H 0.96695 * 113.99704 * 60.00344 * 16 14 13 40 40 H 1.08994 * 109.47229 * 300.00382 * 17 14 13 41 41 H 1.08998 * 109.46376 * 59.99941 * 17 14 13 42 42 H 0.96997 * 120.00348 * 0.02562 * 18 17 14 43 43 H 0.96997 * 120.00358 * 180.02562 * 22 21 19 44 44 H 1.07994 * 120.04506 * 179.70619 * 27 9 8 45 45 H 1.07993 * 119.95909 * 180.25424 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.3965 0.3651 5 8 4.5844 1.3974 0.3645 6 6 5.1999 2.5676 0.6699 7 6 6.5880 2.6367 0.6877 8 6 7.2163 3.8221 0.9977 9 6 6.4566 4.9568 1.2940 10 6 7.1260 6.2296 1.6261 11 8 8.3401 6.2919 1.6417 12 7 6.3915 7.3231 1.9111 13 6 7.0558 8.5863 2.2414 14 6 6.0017 9.6591 2.5214 15 1 5.3242 9.7337 1.6708 16 8 5.2605 9.3048 3.6908 17 6 6.6916 11.0065 2.7438 18 7 5.6821 12.0335 3.0125 19 6 6.0665 13.3274 3.2435 20 1 7.1138 13.5906 3.2279 21 6 5.1101 14.3006 3.4987 22 7 3.8338 13.9798 3.5182 23 14 5.6344 16.0655 3.8144 24 1 5.6842 16.8048 2.5276 25 1 4.6568 16.7174 4.7224 26 1 6.9792 16.0771 4.4443 27 6 5.0613 4.8819 1.2801 28 6 4.4405 3.6941 0.9640 29 1 -1.0502 -0.0005 0.0001 30 1 3.0095 -0.2710 -0.9911 31 1 3.0097 -0.7214 0.7310 32 1 2.7918 1.6682 1.3561 33 1 2.7917 2.1187 -0.3659 34 1 7.1746 1.7592 0.4590 35 1 8.2950 3.8748 1.0117 36 1 5.4228 7.2735 1.8983 37 1 7.6781 8.4491 3.1258 38 1 7.6791 8.8988 1.4035 39 1 5.8008 9.2206 4.4883 40 1 7.3690 10.9319 3.5944 41 1 7.2569 11.2766 1.8518 42 1 4.7415 11.7971 3.0269 43 1 3.1654 14.6598 3.6962 44 1 4.4706 5.7554 1.5132 45 1 3.3622 3.6364 0.9491 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715583737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:27 Heat of formation + Delta-G solvation = -36.019328 kcal Electronic energy + Delta-G solvation = -26191.869504 eV Core-core repulsion = 22176.591244 eV Total energy + Delta-G solvation = -4015.278260 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.81920 -39.76249 -37.92408 -37.29905 -35.09666 -34.48168 -34.01179 -31.80745 -31.27989 -31.11753 -30.22642 -28.79758 -25.70078 -24.90642 -23.68990 -22.77996 -22.05374 -21.44210 -20.42477 -19.19005 -18.40385 -17.84631 -17.16341 -16.82318 -16.75813 -16.11235 -15.97125 -15.47470 -15.03278 -14.78144 -14.57003 -14.48105 -14.33867 -14.20481 -13.98358 -13.71731 -13.57058 -13.04655 -12.90243 -12.84867 -12.54736 -12.52104 -12.32320 -11.87227 -11.42735 -11.29090 -10.96805 -10.86884 -10.83123 -10.67892 -10.63721 -10.19494 -10.13092 -9.82121 -9.51336 -9.47051 -9.17003 -8.91591 -8.62506 -6.95175 -5.77399 -3.07081 0.59202 0.94782 2.02749 2.27192 2.67696 2.71920 3.07236 3.43009 3.48114 3.49883 3.58449 3.90869 4.22320 4.33461 4.38513 4.48407 4.52233 4.57956 4.66828 4.71414 4.83298 4.88527 4.97995 5.15557 5.17326 5.23894 5.27714 5.43939 5.54572 5.55561 5.59883 5.70451 5.79116 5.86577 5.93650 6.03965 6.18029 6.24463 6.37639 6.49896 6.66073 6.85380 7.02721 7.43075 7.67519 7.92390 8.13838 8.40798 9.52564 10.09070 10.45007 11.44927 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016322 B = 0.001714 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.088137 B =16331.387860 C =17904.944128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.196 4.196 3 C -0.008 4.008 4 C 0.062 3.938 5 O -0.311 6.311 6 C 0.154 3.846 7 C -0.160 4.160 8 C -0.020 4.020 9 C -0.171 4.171 10 C 0.559 3.441 11 O -0.544 6.544 12 N -0.717 5.717 13 C 0.090 3.910 14 C 0.089 3.911 15 H 0.104 0.896 16 O -0.553 6.553 17 C 0.127 3.873 18 N -0.725 5.725 19 C -0.244 4.244 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.042 4.042 28 C -0.216 4.216 29 H 0.221 0.779 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.403 0.597 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.374 0.626 40 H 0.023 0.977 41 H 0.029 0.971 42 H 0.389 0.611 43 H 0.255 0.745 44 H 0.132 0.868 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.949 -30.676 -7.195 31.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C -0.044 4.044 4 C -0.013 4.013 5 O -0.224 6.224 6 C 0.108 3.892 7 C -0.179 4.179 8 C -0.038 4.038 9 C -0.174 4.174 10 C 0.347 3.653 11 O -0.422 6.422 12 N -0.369 5.369 13 C -0.034 4.034 14 C 0.029 3.971 15 H 0.122 0.878 16 O -0.358 6.358 17 C -0.002 4.002 18 N -0.370 5.370 19 C -0.375 4.375 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.060 4.060 28 C -0.235 4.235 29 H 0.238 0.762 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.239 0.761 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.221 0.779 40 H 0.041 0.959 41 H 0.047 0.953 42 H 0.223 0.777 43 H 0.065 0.935 44 H 0.150 0.850 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.400 -30.623 -7.615 31.587 hybrid contribution -0.515 1.113 0.563 1.350 sum -1.915 -29.509 -7.052 30.401 Atomic orbital electron populations 1.25026 0.96015 0.98912 1.00387 1.22561 0.93930 1.01956 1.01187 1.18418 0.84952 0.96506 1.04560 1.22748 0.78260 0.97997 1.02331 1.85965 1.21152 1.31136 1.84187 1.19216 0.92311 0.84497 0.93134 1.20405 0.91115 0.99352 1.06998 1.21093 1.00797 0.90011 0.91947 1.19885 0.93601 0.94804 1.09138 1.18148 0.86869 0.83469 0.76848 1.90776 1.13521 1.85181 1.52765 1.45846 1.10598 1.10054 1.70421 1.22135 0.96102 0.83209 1.01977 1.22394 0.93104 0.92424 0.89205 0.87815 1.86567 1.38535 1.91926 1.18735 1.21192 0.92790 0.87824 0.98417 1.42221 1.04841 1.04289 1.85686 1.19228 0.92580 0.84954 1.40777 0.91191 1.24759 0.95268 0.98216 1.02593 1.69674 0.99248 1.32937 1.55959 0.86177 0.77361 0.84914 0.77641 1.21684 1.21732 1.20741 1.21161 0.93379 0.97461 0.94049 1.21195 1.00431 0.93190 1.08684 0.76232 0.88275 0.88274 0.91109 0.91124 0.84380 0.83812 0.76098 0.90888 0.90259 0.77864 0.95892 0.95327 0.77658 0.93480 0.84989 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.01 19.25 29.55 0.57 -0.44 16 2 C -0.20 -1.20 13.34 -37.12 -0.50 -1.70 16 3 C -0.01 -0.04 6.07 -29.52 -0.18 -0.22 16 4 C 0.06 0.34 4.69 37.16 0.17 0.52 16 5 O -0.31 -2.37 10.12 -18.82 -0.19 -2.56 16 6 C 0.15 1.32 6.70 -39.02 -0.26 1.05 16 7 C -0.16 -1.37 9.97 -39.50 -0.39 -1.76 16 8 C -0.02 -0.19 9.58 -39.22 -0.38 -0.57 16 9 C -0.17 -1.85 5.87 -104.96 -0.62 -2.47 16 10 C 0.56 7.38 7.76 -12.44 -0.10 7.29 16 11 O -0.54 -8.97 16.34 5.30 0.09 -8.89 16 12 N -0.72 -8.55 5.45 -61.33 -0.33 -8.88 16 13 C 0.09 1.18 5.31 -4.05 -0.02 1.16 16 14 C 0.09 1.34 3.09 -26.73 -0.08 1.25 16 15 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 16 O -0.55 -8.62 13.03 -35.23 -0.46 -9.08 16 17 C 0.13 2.43 5.92 -4.04 -0.02 2.40 16 18 N -0.73 -18.24 5.49 -59.91 -0.33 -18.57 16 19 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 23 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 C -0.04 -0.37 9.53 -39.22 -0.37 -0.74 16 28 C -0.22 -1.74 9.01 -39.49 -0.36 -2.09 16 29 H 0.22 0.50 7.80 -54.08 -0.42 0.08 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.36 7.65 -51.93 -0.40 -0.04 16 33 H 0.07 0.36 7.65 -51.93 -0.40 -0.04 16 34 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.14 1.39 7.64 -52.48 -0.40 0.99 16 36 H 0.40 4.11 6.49 -40.82 -0.27 3.85 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.37 4.91 9.04 45.56 0.41 5.32 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.39 10.47 7.54 -40.82 -0.31 10.16 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.13 0.95 6.39 -52.49 -0.34 0.62 16 45 H 0.13 0.81 6.28 -52.49 -0.33 0.48 16 LS Contribution 393.66 15.07 5.93 5.93 Total: -1.00 -35.09 393.66 -7.74 -42.83 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -5.37 Total: 13.13 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -2.78 Total: -3.77 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.06 Total: -55.00 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.56 Total: -20.53 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.09 -7.74 -42.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715583737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.815 kcal (2) G-P(sol) polarization free energy of solvation -35.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds