Wall clock time and date at job start Tue Mar 31 2020 17:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46882 * 235.51471 * 3 2 1 5 5 O 1.42895 * 109.46643 * 179.97438 * 4 3 2 6 6 C 1.35717 * 116.99700 * 180.02562 * 5 4 3 7 7 C 1.38993 * 119.91018 * 179.97438 * 6 5 4 8 8 C 1.37709 * 120.08989 * 180.02562 * 7 6 5 9 9 C 1.39736 * 119.90511 * 0.02562 * 8 7 6 10 10 C 1.47613 * 120.08648 * 180.02562 * 9 8 7 11 11 O 1.21584 * 119.99684 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99776 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99622 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47212 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.47533 * 59.99637 * 14 13 12 16 16 O 1.42905 * 109.47264 * 299.99925 * 14 13 12 17 17 C 1.52992 * 109.47482 * 179.97438 * 14 13 12 18 18 N 1.46499 * 109.47658 * 184.99947 * 17 14 13 19 19 C 1.36939 * 120.00451 * 180.02562 * 18 17 14 20 20 H 1.08002 * 119.99755 * 0.02562 * 19 18 17 21 21 C 1.38809 * 119.99895 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00259 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99649 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47262 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46934 * 120.00041 * 23 21 19 26 26 H 1.48502 * 109.46980 * 239.99932 * 23 21 19 27 27 C 1.39733 * 119.82843 * 0.28119 * 9 8 7 28 28 C 1.37706 * 119.90773 * 359.46061 * 27 9 8 29 29 H 4.44647 * 5.63256 * 179.97438 * 4 1 2 30 30 H 1.08997 * 109.46950 * 115.51447 * 3 2 1 31 31 H 1.08996 * 109.47310 * 355.51540 * 3 2 1 32 32 H 1.09004 * 109.46661 * 60.00727 * 4 3 2 33 33 H 1.08996 * 109.47204 * 300.00133 * 4 3 2 34 34 H 1.07994 * 119.96329 * 359.97438 * 7 6 5 35 35 H 1.07996 * 120.05295 * 179.97438 * 8 7 6 36 36 H 0.96996 * 120.00772 * 359.97438 * 12 10 9 37 37 H 1.09002 * 109.47068 * 299.99729 * 13 12 10 38 38 H 1.09001 * 109.47372 * 59.99816 * 13 12 10 39 39 H 0.96696 * 114.00036 * 299.99911 * 16 14 13 40 40 H 1.09001 * 109.47563 * 305.00337 * 17 14 13 41 41 H 1.09004 * 109.47313 * 64.99993 * 17 14 13 42 42 H 0.97002 * 119.99938 * 0.02562 * 18 17 14 43 43 H 0.96998 * 119.99824 * 179.97438 * 22 21 19 44 44 H 1.08004 * 120.04575 * 179.70303 * 27 9 8 45 45 H 1.07995 * 119.95184 * 180.25659 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1557 0.8176 1.1890 5 8 4.5846 0.8178 1.1893 6 6 5.2004 1.5022 2.1864 7 6 6.5885 1.5418 2.2453 8 6 7.2172 2.2348 3.2557 9 6 6.4576 2.8981 4.2229 10 6 7.1274 3.6426 5.3074 11 8 8.3415 3.6795 5.3596 12 7 6.3930 4.2813 6.2397 13 6 7.0578 5.0206 7.3157 14 6 6.0038 5.6476 8.2304 15 1 5.3816 4.8623 8.6597 16 8 5.1864 6.5419 7.4724 17 6 6.6979 6.4192 9.3545 18 7 5.6934 6.9190 10.2965 19 6 6.0821 7.6443 11.3911 20 1 7.1292 7.8483 11.5597 21 6 5.1302 8.1183 12.2833 22 7 3.8541 7.8702 12.0776 23 14 5.6605 9.1084 13.7760 24 1 7.1389 9.2476 13.7780 25 1 5.0371 10.4552 13.7236 26 1 5.2269 8.4099 15.0127 27 6 5.0623 2.8505 4.1639 28 6 4.4413 2.1598 3.1473 29 1 -1.0500 0.0000 -0.0004 30 1 3.0092 0.4435 -0.9274 31 1 3.0099 -1.0236 0.0804 32 1 2.7925 0.3747 2.1165 33 1 2.7918 1.8420 1.1087 34 1 7.1750 1.0279 1.4981 35 1 8.2958 2.2648 3.3011 36 1 5.4244 4.2522 6.1978 37 1 7.6815 4.3386 7.8936 38 1 7.6796 5.8062 6.8865 39 1 5.6749 7.2677 7.0605 40 1 7.3884 5.7572 9.8771 41 1 7.2494 7.2591 8.9320 42 1 4.7529 6.7362 10.1449 43 1 3.1891 8.2012 12.7013 44 1 4.4718 3.3579 4.9124 45 1 3.3630 2.1260 3.0986 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715583756.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:31 Heat of formation + Delta-G solvation = -61.979197 kcal Electronic energy + Delta-G solvation = -26197.348851 eV Core-core repulsion = 22180.944886 eV Total energy + Delta-G solvation = -4016.403964 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.54824 -40.64578 -39.04577 -38.17984 -36.10297 -35.52795 -35.35158 -33.23199 -32.38490 -31.77092 -31.02601 -30.03507 -27.16448 -25.60059 -24.77909 -24.04603 -22.93592 -22.71284 -21.40061 -19.74845 -19.30998 -18.96699 -18.48413 -17.77926 -17.30367 -17.21360 -17.08474 -16.43351 -16.36817 -15.89457 -15.81079 -15.52567 -15.07136 -14.96057 -14.84988 -14.79070 -14.49467 -14.31990 -14.20146 -13.87156 -13.61892 -13.37623 -13.12607 -13.11880 -12.95678 -12.78569 -12.12174 -11.98873 -11.97741 -11.89645 -11.81001 -11.27332 -11.26096 -11.05861 -11.00215 -10.86726 -10.21627 -10.13873 -9.31972 -9.01207 -7.95462 -5.24758 -0.16614 0.28511 1.48085 1.48611 1.58393 1.58845 1.79210 1.87245 2.06279 2.22761 2.56080 2.80299 3.36065 3.47268 3.55309 3.57706 3.66897 3.74129 3.82371 3.96395 4.00309 4.01876 4.16214 4.21047 4.29433 4.35529 4.41977 4.54209 4.61957 4.71213 4.82624 4.83865 4.92753 4.94279 5.07002 5.12130 5.19467 5.21107 5.29793 5.34678 5.48691 5.59000 6.26032 6.26238 6.47925 6.64427 6.79086 7.15028 7.33264 8.08294 8.31473 9.27981 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016401 B = 0.001714 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.836481 B =16328.010947 C =17902.321611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.224 4.224 3 C -0.006 4.006 4 C 0.059 3.941 5 O -0.315 6.315 6 C 0.155 3.845 7 C -0.162 4.162 8 C -0.027 4.027 9 C -0.191 4.191 10 C 0.559 3.441 11 O -0.584 6.584 12 N -0.708 5.708 13 C 0.102 3.898 14 C 0.109 3.891 15 H 0.101 0.899 16 O -0.562 6.562 17 C 0.122 3.878 18 N -0.739 5.739 19 C -0.248 4.248 20 H 0.077 0.923 21 C -0.075 4.075 22 N -0.968 5.968 23 Si 0.974 3.026 24 H -0.266 1.266 25 H -0.293 1.293 26 H -0.293 1.293 27 C -0.039 4.039 28 C -0.216 4.216 29 H 0.244 0.756 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.154 0.846 35 H 0.139 0.861 36 H 0.413 0.587 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.385 0.615 40 H 0.034 0.966 41 H 0.032 0.968 42 H 0.377 0.623 43 H 0.251 0.749 44 H 0.148 0.852 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.358 -17.280 -27.628 32.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.224 4.224 3 C -0.042 4.042 4 C -0.016 4.016 5 O -0.228 6.228 6 C 0.108 3.892 7 C -0.181 4.181 8 C -0.046 4.046 9 C -0.194 4.194 10 C 0.348 3.652 11 O -0.466 6.466 12 N -0.360 5.360 13 C -0.023 4.023 14 C 0.049 3.951 15 H 0.119 0.881 16 O -0.369 6.369 17 C -0.005 4.005 18 N -0.382 5.382 19 C -0.380 4.380 20 H 0.095 0.905 21 C -0.267 4.267 22 N -0.618 5.618 23 Si 0.803 3.197 24 H -0.190 1.190 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.058 4.058 28 C -0.234 4.234 29 H 0.260 0.740 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.172 0.828 35 H 0.157 0.843 36 H 0.251 0.749 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.234 0.766 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.209 0.791 43 H 0.060 0.940 44 H 0.165 0.835 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.756 -17.673 -27.431 32.679 hybrid contribution -0.463 1.015 0.979 1.485 sum -2.219 -16.657 -26.452 31.339 Atomic orbital electron populations 1.25768 0.96946 0.99222 0.98568 1.23001 0.94704 1.02165 1.02508 1.18421 0.84454 1.02498 0.98838 1.22887 0.77081 1.01663 0.99938 1.85964 1.22348 1.68184 1.46348 1.19358 0.92444 0.90222 0.87153 1.20552 0.91558 1.04468 1.01488 1.21132 1.00729 0.91749 0.90991 1.19793 0.94507 1.06130 0.98995 1.18509 0.86446 0.78435 0.81803 1.90751 1.15198 1.63907 1.76695 1.45708 1.11090 1.52036 1.27185 1.21882 0.95260 0.96468 0.88714 1.22086 0.91816 0.91665 0.89562 0.88079 1.86548 1.38640 1.42384 1.69311 1.21410 0.92114 0.96242 0.90775 1.42416 1.05493 1.64351 1.25976 1.19692 0.92956 1.24911 1.00427 0.90547 1.25584 0.95389 1.03258 1.02500 1.69835 1.00468 1.52231 1.39300 0.85064 0.77849 0.77687 0.79080 1.19016 1.22033 1.22002 1.21318 0.92594 0.94866 0.96974 1.21430 1.01546 1.03472 0.96981 0.73979 0.87674 0.87684 0.90544 0.90524 0.82816 0.84286 0.74912 0.90487 0.90695 0.76558 0.94810 0.95055 0.79120 0.93987 0.83470 0.82661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.74 19.25 74.32 1.43 -0.31 16 2 C -0.22 -2.45 13.34 31.13 0.42 -2.03 16 3 C -0.01 -0.05 6.07 28.79 0.17 0.13 16 4 C 0.06 0.54 4.69 71.98 0.34 0.88 16 5 O -0.32 -4.23 10.12 -90.38 -0.92 -5.14 16 6 C 0.15 2.37 6.70 22.63 0.15 2.52 16 7 C -0.16 -2.59 9.97 22.33 0.22 -2.37 16 8 C -0.03 -0.53 9.59 22.51 0.22 -0.31 16 9 C -0.19 -4.01 5.88 -20.08 -0.12 -4.13 16 10 C 0.56 14.54 7.76 86.72 0.67 15.21 16 11 O -0.58 -19.42 16.34 -3.98 -0.07 -19.48 16 12 N -0.71 -16.15 5.40 -466.19 -2.52 -18.67 16 13 C 0.10 2.55 5.34 86.38 0.46 3.01 16 14 C 0.11 3.16 3.08 30.59 0.09 3.26 16 15 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 16 O -0.56 -16.55 13.03 -148.98 -1.94 -18.49 16 17 C 0.12 4.57 5.90 86.38 0.51 5.08 16 18 N -0.74 -37.02 5.55 -343.46 -1.91 -38.93 16 19 C -0.25 -13.81 9.99 84.03 0.84 -12.97 16 20 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 21 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 22 N -0.97 -59.40 13.06 21.65 0.28 -59.11 16 23 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 27 C -0.04 -0.63 9.53 22.51 0.21 -0.41 16 28 C -0.22 -3.02 9.01 22.33 0.20 -2.82 16 29 H 0.24 0.63 7.80 -4.42 -0.03 0.59 16 30 H 0.11 0.69 8.14 -2.39 -0.02 0.68 16 31 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 0.62 7.65 -2.38 -0.02 0.60 16 33 H 0.08 0.62 7.66 -2.39 -0.02 0.60 16 34 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.14 2.75 7.64 -2.91 -0.02 2.73 16 36 H 0.41 7.85 6.37 -92.71 -0.59 7.26 16 37 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.39 9.28 9.05 -74.06 -0.67 8.61 16 40 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.38 20.37 7.67 -92.71 -0.71 19.66 16 43 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 44 H 0.15 1.83 6.40 -2.91 -0.02 1.81 16 45 H 0.16 1.46 6.28 -2.91 -0.02 1.44 16 Total: -1.00 -74.52 393.67 0.32 -74.20 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: -0.93 Total: 36.63 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 6.29 Total: 0.90 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -4.14 Total: -116.70 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -2.92 Total: -43.11 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -74.52 0.32 -74.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715583756.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.219 kcal (2) G-P(sol) polarization free energy of solvation -74.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds